Fernando Calamante

56 papers Journal 51Unranked 5

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Data-Driven Method to Map the Functional Organisation of Human Brain White Matter. CoRR Yifei Sun, James M. Shine, Robert D. Sanders, Robin F. H. Cash, Sharon L. Naismith, Fernando Calamante, Jinglei Lv
2025	J	`jnl`	Age Sensitive Hippocampal Functional Connectivity: New Insights from 3D CNNs and Saliency Mapping. CoRR Yifei Sun, Marshall A. Dalton, Robert D. Sanders, Yixuan Yuan, Xiang Li, Sharon L. Naismith, Fernando Calamante, Jinglei Lv
2025	J	`jnl`	From Promise to Practical Reality: Transforming Diffusion MRI Analysis with Fast Deep Learning Enhancement. CoRR Xinyi Wang, Michael Barnett, Frederique Boonstra, Yael Barnett, Mariano Cabezas, Arkiev D'Souza, Matthew C. Kiernan, Kain Kyle, Meng Law, Lynette Masters, Zihao Tang, Stephen Tisch, Sicong Tu, Anneke van der Walt, Dongang Wang, Fernando Calamante, Weidong Cai, Chenyu Wang
2025	J	`jnl`	Voxel-Level Brain States Prediction Using Swin Transformer. CoRR Yifei Sun, Daniel Chahine, Qinghao Wen, Tianming Liu, Xiang Li, Yixuan Yuan, Fernando Calamante, Jinglei Lv
2025	J	`jnl`	Voxel-Level Brain States Prediction Using Swin Transformer. IEEE J. Biomed. Health Informatics Yifei Sun, Daniel Chahine, Qinghao Wen, Tianming Liu, Xiang Li, Yixuan Yuan, Fernando Calamante, Jinglei Lv
2024	—	`conf`	Enhancing Angular Resolution via Directionality Encoding and Geometric Constraints in Brain Diffusion Tensor Imaging. ICONIP (4) Sheng Chen, Zihao Tang, Mariano Cabezas, Xinyi Wang, Arkiev D'Souza, Michael Barnett, Fernando Calamante, Weidong Cai, Chenyu Wang
2024	J	`jnl`	Enhancing Angular Resolution via Directionality Encoding and Geometric Constraints in Brain Diffusion Tensor Imaging. CoRR Sheng Chen, Zihao Tang, Mariano Cabezas, Xinyi Wang, Arkiev D'Souza, Michael Barnett, Fernando Calamante, Weidong Cai, Chenyu Wang
2024	—	`conf`	Fibre Population-guided Pre-training for 3D Spatial Super-Resolution on Multimodal Brain Diffusion MR Imaging. MMAsia Zihao Tang, Xinyi Wang, Mariano Cabezas, Arkiev D'Souza, Michael Barnett, Fernando Calamante, Weidong Cai, Chenyu Wang
2024	J	`jnl`	How Much Data are Enough? Investigating Dataset Requirements for Patch-Based Brain MRI Segmentation Tasks. CoRR Dongang Wang, Peilin Liu, Hengrui Wang, Heidi Beadnall, Kain Kyle, Linda Ly, Mariano Cabezas, Geng Zhan, Ryan Sullivan, Tom Weidong Cai, Wanli Ouyang, Fernando Calamante, Michael Barnett, Chenyu Wang
2024	J	`jnl`	Improving multiple sclerosis lesion segmentation across clinical sites: A federated learning approach with noise-resilient training. Artif. Intell. Medicine Lei Bai, Dongang Wang, Hengrui Wang, Michael Barnett, Mariano Cabezas, Weidong Cai, Fernando Calamante, Kain Kyle, Dongnan Liu, Linda Ly, Aria Nguyen, Chun-Chien Shieh, Ryan Sullivan, Geng Zhan, Wanli Ouyang, Chenyu Wang
2024	—	`conf`	Predicting Human Brain States with Transformer. LDTM/MMMI/ML4MHD/ML-CDS@MICCAI Yifei Sun, Mariano Cabezas, Jiah Lee, Chenyu Wang, Wei Zhang, Fernando Calamante, Jinglei Lv
2024	J	`jnl`	Predicting Human Brain States with Transformer. CoRR Yifei Sun, Mariano Cabezas, Jiah Lee, Chenyu Wang, Wei Zhang, Fernando Calamante, Jinglei Lv
2023	J	`jnl`	Hippocampal Neuronal Integrity and Functional Connectivity Within the Default Mode Network in Mild Cognitive Impairment: A Multimodal Investigation. Brain Connect. Marilena M. Demayo, Jinglei Lv, Shantel L. Duffy, Arkiev D'Souza, Loren Mowszowski, Sharon L. Naismith, Fernando Calamante
2023	J	`jnl`	Improving Multiple Sclerosis Lesion Segmentation Across Clinical Sites: A Federated Learning Approach with Noise-Resilient Training. CoRR Lei Bai, Dongang Wang, Michael Barnett, Mariano Cabezas, Weidong Cai, Fernando Calamante, Kain Kyle, Dongnan Liu, Linda Ly, Aria Nguyen, Chun-Chien Shieh, Ryan Sullivan, Hengrui Wang, Geng Zhan, Wanli Ouyang, Chenyu Wang
2022	—	`conf`	Diffusion MRI Fibre Orientation Distribution Inpainting. CDMRI@MICCAI Zihao Tang, Xinyi Wang, Mariano Cabezas, Arkiev D'Souza, Fernando Calamante, Dongnan Liu, Michael Barnett, Chenyu Wang, Tom Weidong Cai
2022	J	`jnl`	FOD-Net: A deep learning method for fiber orientation distribution angular super resolution. Medical Image Anal. Rui Zeng, Jinglei Lv, He Wang, Luping Zhou, Michael Barnett, Fernando Calamante, Chenyu Wang
2022	J	`jnl`	MS Lesion Segmentation: Revisiting Weighting Mechanisms for Federated Learning. CoRR Dongnan Liu, Mariano Cabezas, Dongang Wang, Zihao Tang, Lei Bai, Geng Zhan, Yuling Luo, Kain Kyle, Linda Ly, James Yu, Chun-Chien Shieh, Aria Nguyen, Ettikan Kandasamy Karuppiah, Ryan Sullivan, Fernando Calamante, Michael Barnett, Wanli Ouyang, Weidong Cai, Chenyu Wang
2022	J	`jnl`	Network communication models narrow the gap between the modular organization of structural and functional brain networks. NeuroImage Caio Seguin, Sina Mansour L., Olaf Sporns, Andrew Zalesky, Fernando Calamante
2022	J	`jnl`	Structural connections between the noradrenergic and cholinergic system shape the dynamics of functional brain networks. NeuroImage Natasha L. Taylor, Adora M. DSouza, Brandon R. Munn, Jinglei Lv, Laszlo Zaborszky, Eli J. Müller, G. Wainstein, Fernando Calamante, James M. Shine
2021	J	`jnl`	Characterisation of white matter asymmetries in the healthy human brain using diffusion MRI fixel-based analysis. NeuroImage Arush Honnedevasthana Arun, Alan Connelly, Robert Elton Smith, Fernando Calamante
2021	J	`jnl`	TractLearn: A geodesic learning framework for quantitative analysis of brain bundles. NeuroImage Arnaud Attye, Félix Renard, Monica Baciu, Elise Roger, Laurent Lamalle, Patrick Dehail, Hélène Cassoudesalle, Fernando Calamante
2021	J	`jnl`	Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? NeuroImage Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed M. Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K. Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Pérez, Catherine Lebel, Jess E. Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux
2019	J	`jnl`	A Novel Method for Extracting Hierarchical Functional Subnetworks Based on a Multisubject Spectral Clustering Approach. Brain Connect. Xiaoyun Liang, Chun-Hung Yeh, Alan Connelly, Fernando Calamante
2019	J	`jnl`	Connectomes from streamlines tractography: Assigning streamlines to brain parcellations is not trivial but highly consequential. NeuroImage Chun-Hung Yeh, Robert E. Smith, Thijs Dhollander, Fernando Calamante, Alan Connelly
2019	J	`jnl`	Is removal of weak connections necessary for graph-theoretical analysis of dense weighted structural connectomes from diffusion MRI? NeuroImage Oren Civier, Robert Elton Smith, Chun-Hung Yeh, Alan Connelly, Fernando Calamante
2016	J	`jnl`	Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics. NeuroImage Chun-Hung Yeh, Robert E. Smith, Xiaoyun Liang, Fernando Calamante, Alan Connelly
2016	J	`jnl`	The contribution of geometry to the human connectome. NeuroImage James A. Roberts, Alistair Perry, Anton R. Lord, Gloria M. P. Roberts, Philip B. Mitchell, Robert E. Smith, Fernando Calamante, Michael Breakspear
2015	J	`jnl`	Fourier Tract Sampling (FouTS): A framework for improved inference of white matter tracts from diffusion MRI by explicitly modelling tract volume. NeuroImage Thomas G. Close, Jacques-Donald Tournier, Leigh A. Johnston, Fernando Calamante, Iven Mareels, Alan Connelly
2015	J	`jnl`	Quantification of voxel-wise total fibre density: Investigating the problems associated with track-count mapping. NeuroImage Fernando Calamante, Robert E. Smith, Jacques-Donald Tournier, David Raffelt, Alan Connelly
2015	J	`jnl`	Reproducibility of multiphase pseudo-continuous arterial spin labeling and the effect of post-processing analysis methods. NeuroImage Amir Fazlollahi, Pierrick Bourgeat, Xiaoyun Liang, Fabrice Mériaudeau, Alan Connelly, Olivier Salvado, Fernando Calamante
2015	J	`jnl`	SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography. NeuroImage Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
2015	J	`jnl`	The effects of SIFT on the reproducibility and biological accuracy of the structural connectome. NeuroImage Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
2015	J	`jnl`	Voxel-Wise Functional Connectomics Using Arterial Spin Labeling Functional Magnetic Resonance Imaging: The Role of Denoising. Brain Connect. Xiaoyun Liang, Alan Connelly, Fernando Calamante
2014	J	`jnl`	Graph analysis of resting-state ASL perfusion MRI data: Nonlinear correlations among CBF and network metrics. NeuroImage Xiaoyun Liang, Alan Connelly, Fernando Calamante
2014	J	`jnl`	Mapping somatosensory connectivity in adult mice using diffusion MRI tractography and super-resolution track density imaging. NeuroImage Kay Richards, Fernando Calamante, Jacques-Donald Tournier, Nyoman D. Kurniawan, Farnoosh Sadeghian, Alexander R. Retchford, Gabriel Davis Jones, Christopher A. Reid, David C. Reutens, Roger J. Ordidge, Alan Connelly, Steven Petrou
2014	J	`jnl`	Quantification of track-weighted imaging (TWI): Characterisation of within-subject reproducibility and between-subject variability. NeuroImage Lisa Willats, David Raffelt, Robert E. Smith, Jacques-Donald Tournier, Alan Connelly, Fernando Calamante
2014	J	`jnl`	Visualization of mouse barrel cortex using ex-vivo track density imaging. NeuroImage Nyoman D. Kurniawan, Kay L. Richards, Zhengyi Yang, David She, Jeremy F. P. Ullmann, Randal X. Moldrich, Sha Liu, Javier Urriola Yaksic, Gayeshika Leanage, Irina Kharatishvili, Verena Wimmer, Fernando Calamante, Graham J. Galloway, Steven Petrou, David C. Reutens
2013	J	`jnl`	SIFT: Spherical-deconvolution informed filtering of tractograms. NeuroImage Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
2013	J	`jnl`	Track-weighted functional connectivity (TW-FC): A tool for characterizing the structural-functional connections in the brain. NeuroImage Fernando Calamante, Richard A. J. Masterton, Jacques-Donald Tournier, Robert E. Smith, Lisa Willats, David Raffelt, Alan Connelly
2012	J	`jnl`	A Int. J. Imaging Syst. Technol. Xiaoyun Liang, Jacques-Donald Tournier, Richard A. J. Masterton, Alan Connelly, Fernando Calamante
2012	J	`jnl`	A generalised framework for super-resolution track-weighted imaging. NeuroImage Fernando Calamante, Jacques-Donald Tournier, Robert E. Smith, Alan Connelly
2012	J	`jnl`	Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information. NeuroImage Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
2012	J	`jnl`	Comment on time-varying eddy currents effects on diffusion-weighting echo-planar imaging. NeuroImage Fernando Calamante, Alan Connelly
2012	J	`jnl`	MRtrix: Diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
2012	J	`jnl`	Super-resolution track-density imaging studies of mouse brain: Comparison to histology. NeuroImage Fernando Calamante, Jacques-Donald Tournier, Nyoman D. Kurniawan, Zhengyi Yang, Erika Gyengesi, Graham J. Galloway, David C. Reutens, Alan Connelly
2011	J	`jnl`	Track density imaging (TDI): Validation of super resolution property. NeuroImage Fernando Calamante, Jacques-Donald Tournier, Robin M. Heidemann, Alfred Anwander, Graeme D. Jackson, Alan Connelly
2010	J	`jnl`	The effect of finite diffusion gradient pulse duration on fibre orientation estimation in diffusion MRI. NeuroImage Chun-Hung Yeh, Jacques-Donald Tournier, Kuan-Hung Cho, Ching-Po Lin, Fernando Calamante, Alan Connelly
2010	J	`jnl`	Track-density imaging (TDI): Super-resolution white matter imaging using whole-brain track-density mapping. NeuroImage Fernando Calamante, Jacques-Donald Tournier, Graeme D. Jackson, Alan Connelly
2009	J	`jnl`	A software tool to generate simulated white matter structures for the assessment of fibre-tracking algorithms. NeuroImage Thomas G. Close, Jacques-Donald Tournier, Fernando Calamante, Leigh A. Johnston, Iven M. Y. Mareels, Alan Connelly
2008	J	`jnl`	Resolving crossing fibres using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data. NeuroImage Jacques-Donald Tournier, Chun-Hung Yeh, Fernando Calamante, Kuan-Hung Cho, Alan Connelly, Ching-Po Lin
2007	J	`jnl`	Cortical abnormalities and language function in young patients with basal ganglia stroke. NeuroImage Alison Rowan, Faraneh Vargha-Khadem, Fernando Calamante, Jacques-Donald Tournier, Fenella J. Kirkham, Wui K. Chong, Torsten Baldeweg, Alan Connelly, David G. Gadian
2007	J	`jnl`	Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution. NeuroImage Jacques-Donald Tournier, Fernando Calamante, Alan Connelly
2004	J	`jnl`	Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage Jacques-Donald Tournier, Fernando Calamante, David G. Gadian, Alan Connelly
2003	J	`jnl`	Diffusion-weighted magnetic resonance imaging fibre tracking using a front evolution algorithm. NeuroImage Jacques-Donald Tournier, Fernando Calamante, David G. Gadian, Alan Connelly
2003	J	`jnl`	Estimation of bolus dispersion effects in perfusion MRI using image-based computational fluid dynamics. NeuroImage Fernando Calamante, Peter J. Yim, Juan R. Cebral
2001	—	`conf`	Study of Connectivity in the Brain Using the Full Diffusion Tensor from MRI. IPMI Philipp G. Batchelor, Derek L. G. Hill, Fernando Calamante, David Atkinson