Fereydoun Hormozdiari

23 papers A 2B 5C 2Misc 2Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
Meltos: multi-sample tumor phylogeny reconstruction for structural variants.
Bioinform.
Camir Ricketts, Daniel Seidman, Victoria Popic, Fereydoun Hormozdiari, Serafim Batzoglou, Iman Hajirasouliha
2019 J jnl
Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
Bioinform.
Arda Soylev, Thong Minh Le, Hajar Amini, Can Alkan, Fereydoun Hormozdiari
2018 B conf
Contribution of Structural Variation to Genome Structure: TAD Fusion Discovery and Ranking.
RECOMB
Linh Huynh, Fereydoun Hormozdiari
2017 B conf
Ultra-Accurate Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders.
RECOMB
Linh Huynh, Fereydoun Hormozdiari
2016 B conf
The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB).
RECOMB
Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin
2011 J jnl
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.
Bioinform.
Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp
2011 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Can Alkan, Emidio Capriotti, Eleazar Eskin, Fereydoun Hormozdiari, Maricel G. Kann
2011 B conf
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes.
RECOMB
Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp
2011 J jnl
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.
PLoS Comput. Biol.
Andrew W. McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah
2010 J jnl
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
Bioinform.
Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp
2010 J jnl
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
Bioinform.
Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2010 J jnl
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets.
J. Comput. Biol.
Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp
2010 J jnl
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length.
J. Comput. Biol.
Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp
2009 B conf
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.
RECOMB
Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2009 Misc conf
Dense Graphlet Statistics of Protein Interaction and Random Networks.
Pacific Symposium on Biocomputing
Recep Colak, Fereydoun Hormozdiari, Flavia Moser, Alexander Schönhuth, J. Holman, Martin Ester, Süleyman Cenk Sahinalp
2009 C conf
Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks.
WABI
Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester
2009 J jnl
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study.
J. Comput. Biol.
Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov
2008 A conf
Biomolecular network motif counting and discovery by color coding.
ISMB
Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp
2008 A conf
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.
ISMB
Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanç Birol
2008 C conf
The Relation between Indel Length and Functional Divergence: A Formal Study.
WABI
Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp
2007 J jnl
Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution.
PLoS Comput. Biol.
Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp
2007 J jnl
Relationship between insertion/deletion (indel) frequency of proteins and essentiality.
BMC Bioinform.
Simon K. Chan, Michael Hsing, Fereydoun Hormozdiari, Artem Cherkasov
2006 — conf
Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation.
Systems Biology and Computational Proteomics
Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp