Feng Ding

29 papers Journal 29
YearRankTypeTitle / Venue / Authors
2025 J jnl
Conformational Ensemble Dynamics of Intrinsically Disordered Full-Length α- and β-Synuclein Monomers.
J. Chem. Inf. Model.
Zhongyue Lv, Huan Xu, Ying Zhang, Huayuan Tang, Feng Ding, Fengjuan Huang, Yunxiang Sun
2025 J jnl
The Glycine-Rich Region as a Flexible Molecular Glue Promoting hPrP
J. Chem. Inf. Model.
Xiaohan Zhang, Huan Xu, Huayuan Tang, Zhongyue Lv, Yu Zou, Fengjuan Huang, Feng Ding, Yunxiang Sun
2024 J jnl
Computational Investigation of Coaggregation and Cross-Seeding between Aβ and hIAPP Underpinning the Cross-Talk in Alzheimer's Disease and Type 2 Diabetes.
J. Chem. Inf. Model.
Xinjie Fan, Xiaohan Zhang, Jiajia Yan, Huan Xu, Wenhui Zhao, Feng Ding, Fengjuan Huang, Yunxiang Sun
2024 J jnl
Computational insights into the cross-talk between medin and A
Briefings Bioinform.
Fengjuan Huang, Xinjie Fan, Ying Wang, Yu Zou, Jiangfang Lian, Chuang Wang, Feng Ding, Yunxiang Sun
2024 J jnl
Deciphering the Morphological Difference of Amyloid-β Fibrils in Familial and Sporadic Alzheimer's Diseases.
J. Chem. Inf. Model.
Gangtong Huang, Zhiyuan Song, Yun Xu, Yunxiang Sun, Feng Ding
2024 J jnl
Exploring the Impact of Physiological C-Terminal Truncation on α-Synuclein Conformations to Unveil Mechanisms Regulating Pathological Aggregation.
J. Chem. Inf. Model.
Fengjuan Huang, Jiajia Yan, Huan Xu, Ying Wang, Xiaohan Zhang, Yu Zou, Jiangfang Lian, Feng Ding, Yunxiang Sun
2024 J jnl
Molecular Insights into the Effects of F16L and F19L Substitutions on the Conformation and Aggregation Dynamics of Human Calcitonin.
J. Chem. Inf. Model.
Fengjuan Huang, Jiahui Huang, Jiajia Yan, Yuying Liu, Jiangfang Lian, Qinxue Sun, Feng Ding, Yunxiang Sun
2024 J jnl
Uncovering Intermolecular Interactions Driving the Liquid-Liquid Phase Separation of the TDP-43 Low-Complexity Domain via Atomistic Dimerization Simulations.
J. Chem. Inf. Model.
Huayuan Tang, Yunxiang Sun, Lei Wang, Pu Chun Ke, Feng Ding
2023 J jnl
Direct Observation of Seeded Conformational Conversion of hIAPP
J. Chem. Inf. Model.
Gangtong Huang, Huayuan Tang, Yuying Liu, Chi Zhang, Pu Chun Ke, Yunxiang Sun, Feng Ding
2023 J jnl
Dissecting the Self-assembly Dynamics of Imperfect Repeats in α-Synuclein.
J. Chem. Inf. Model.
Fengjuan Huang, Ying Wang, Yu Zhang, Chuang Wang, Jiangfang Lian, Feng Ding, Yunxiang Sun
2023 J jnl
SEVI Inhibits Aβ Amyloid Aggregation by Capping the β-Sheet Elongation Edges.
J. Chem. Inf. Model.
Ying Wang, Jia Xu, Fengjuan Huang, Jiajia Yan, Xinjie Fan, Yu Zou, Chuang Wang, Feng Ding, Yunxiang Sun
2023 J jnl
Structural Perturbation of Monomers Determines the Amyloid Aggregation Propensity of Calcitonin Variants.
J. Chem. Inf. Model.
Yuying Liu, Ying Wang, Yu Zhang, Yu Zou, Guanghong Wei, Feng Ding, Yunxiang Sun
2023 J jnl
Unveiling Medin Folding and Dimerization Dynamics and Conformations via Atomistic Discrete Molecular Dynamics Simulations.
J. Chem. Inf. Model.
Fengjuan Huang, Xinjie Fan, Ying Wang, Chuang Wang, Yu Zou, Jiangfang Lian, Feng Ding, Yunxiang Sun
2022 J jnl
Hydrophobic/Hydrophilic Ratio of Amphiphilic Helix Mimetics Determines the Effects on Islet Amyloid Polypeptide Aggregation.
J. Chem. Inf. Model.
Huayuan Tang, Yunxiang Sun, Feng Ding
2021 J jnl
Direct Observation of β-Barrel Intermediates in the Self-Assembly of Toxic SOD128-38 and Absence in Nontoxic Glycine Mutants.
J. Chem. Inf. Model.
Yunxiang Sun, Junchao Huang, Xiangmei Duan, Feng Ding
2021 J jnl
Misfolding and Self-Assembly Dynamics of Microtubule-Binding Repeats of the Alzheimer-Related Protein Tau.
J. Chem. Inf. Model.
Huan He, Yuying Liu, Yunxiang Sun, Feng Ding
2016 J jnl
CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection.
J. Chem. Inf. Model.
Praveen Nedumpully-Govindan, Domen B. Jemec, Feng Ding
2014 J jnl
Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity.
Bioinform.
Praveen Nedumpully-Govindan, Lin Li, Emil Alexov, Mark A. Blenner, Feng Ding
2013 J jnl
Incorporating Backbone Flexibility in MedusaDock Improves Ligand-Binding Pose Prediction in the CSAR2011 Docking Benchmark.
J. Chem. Inf. Model.
Feng Ding, Nikolay V. Dokholyan
2013 J jnl
Predicting Binding Affinity of CSAR Ligands Using Both Structure-Based and Ligand-Based Approaches.
J. Chem. Inf. Model.
Denis Fourches, Eugene N. Muratov, Feng Ding, Nikolay V. Dokholyan, Alexander Tropsha
2011 J jnl
Gaia: automated quality assessment of protein structure models.
Bioinform.
Pradeep Kota, Feng Ding, Srinivas Ramachandran, Nikolay V. Dokholyan
2010 J jnl
Polyglutamine Induced Misfolding of Huntingtin Exon1 is Modulated by the Flanking Sequences.
PLoS Comput. Biol.
Vinal V. Lakhani, Feng Ding, Nikolay V. Dokholyan
2010 J jnl
Rapid Flexible Docking Using a Stochastic Rotamer Library of Ligands.
J. Chem. Inf. Model.
Feng Ding, Shuangye Yin, Nikolay V. Dokholyan
2008 J jnl
Active Nuclear Receptors Exhibit Highly Correlated AF-2 Domain Motions.
PLoS Comput. Biol.
Denise G. Teotico, Monica L. Frazier, Feng Ding, Nikolay V. Dokholyan, Brenda R. S. Temple, Matthew R. Redinbo
2008 J jnl
iFoldRNA: three-dimensional RNA structure prediction and folding.
Bioinform.
Shantanu Sharma, Feng Ding, Nikolay V. Dokholyan
2006 J jnl
Correction: Emergence of Protein Fold Families through Rational Design.
PLoS Comput. Biol.
Feng Ding, Nikolay V. Dokholyan
2006 J jnl
Emergence of Protein Fold Families through Rational Design.
PLoS Comput. Biol.
Feng Ding, Nikolay V. Dokholyan
2006 J jnl
iFold: a platform for interactive folding simulations of proteins.
Bioinform.
Shantanu Sharma, Feng Ding, Huifen Nie, Daniel Watson, Aditya Unnithan, Jameson Lopp, Diane Pozefsky, Nikolay V. Dokholyan
2005 J jnl
Molecular Origin of Polyglutamine Aggregation in Neurodegenerative Diseases.
PLoS Comput. Biol.
Sagar D. Khare, Feng Ding, Kenneth N. Gwanmesia, Nikolay V. Dokholyan