Feichen Shen - RankMe

71 papers B 3Misc 14Journal 31Unranked 23

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses. J. Biomed. Informatics Andrew Wen, Liwei Wang, Huan He, Sijia Liu, Sunyang Fu, Sunghwan Sohn, Jacob A. Kugel, Vinod C. Kaggal, Ming Huang, Yanshan Wang, Feichen Shen, Jungwei Fan, Hongfang Liu
2021	J	`jnl`	Comparisons of Graph Neural Networks on Cancer Classification Leveraging a Joint of Phenotypic and Genetic Features. CoRR David Oniani, Chen Wang, Yiqing Zhao, Andrew Wen, Hongfang Liu, Feichen Shen
2021	J	`jnl`	Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. J. Am. Medical Informatics Assoc. Sam Henry, Yanshan Wang, Feichen Shen, Özlem Uzuner
2021	J	`jnl`	Leveraging a Joint of Phenotypic and Genetic Features on Cancer Patient Subgrouping. CoRR David Oniani, Chen Wang, Yiqing Zhao, Andrew Wen, Hongfang Liu, Feichen Shen
2021	—	`conf`	POKR: Building a Computable Heterogeneous Knowledge Resource for Precision Oncology. MedInfo Yanbo Guo, Chen Wang, Raymond M. Moore, Hongfang Liu, Feichen Shen
2020	B	`conf`	A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation. CBMS Andrew Wen, Feichen Shen, Sungrim Moon, Hongfang Liu, Jungwei Fan
2020	Misc	`conf`	Accelerating Development of Learning Healthcare Systems via Distantly Supervised Knowledge Discovery. AMIA Andrew Wen, Sunyang Fu, Feichen Shen, Hongfang Liu
2020	J	`jnl`	Clinical concept extraction: A methodology review. J. Biomed. Informatics Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu
2020	J	`jnl`	Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases. J. Am. Medical Informatics Assoc. David Oniani, Guoqian Jiang, Hongfang Liu, Feichen Shen
2020	B	`conf`	Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional Network Based Recommendation System. CBMS Feichen Shen, Andrew Wen, Hongfang Liu
2020	Misc	`conf`	Extracting Patient Genetic Information from Unstructured Clinical Notes. AMIA Yiqing Zhao, Hanzhong Yu, Luke A. Carlson, Feichen Shen, Sunyang Fu, Hongfang Liu, Chen Wang
2020	Misc	`conf`	Identifying Rare Disease Studies by Natural Language Processing. AMIA Huan He, Feichen Shen, Michael Lin, Hongfang Liu
2020	J	`jnl`	MedSTS: a resource for clinical semantic textual similarity. Lang. Resour. Evaluation Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
2020	J	`jnl`	Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J. Am. Medical Informatics Assoc. Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen
2020	B	`conf`	Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology Embeddings. CBMS Feichen Shen, Andrew Wen, Hongfang Liu
2020	J	`jnl`	The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. J. Am. Medical Informatics Assoc. Sam Henry, Yanshan Wang, Feichen Shen, Özlem Uzuner
2019	J	`jnl`	A clinical text classification paradigm using weak supervision and deep representation. BMC Medical Informatics Decis. Mak. Yanshan Wang, Sunghwan Sohn, Sijia Liu, Feichen Shen, Liwei Wang, Elizabeth J. Atkinson, Shreyasee Amin, Hongfang Liu
2019	J	`jnl`	An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. J. Heal. Informatics Res. Na Hong, Kui Wang, Sizhu Wu, Feichen Shen, Lixia Yao, Guoqian Jiang
2019	J	`jnl`	CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model. CoRR Sijia Liu, Yanshan Wang, Andrew Wen, Liwei Wang, Na Hong, Feichen Shen, Steven Bedrick, William R. Hersh, Hongfang Liu
2019	J	`jnl`	Detection of Surgical Site Infection Utilizing Automated Feature Generation in Clinical Notes. J. Heal. Informatics Res. Feichen Shen, David W. Larson, James M. Naessens, Elizabeth B. Habermann, Hongfang Liu, Sunghwan Sohn
2019	J	`jnl`	Development of Clinical Concept Extraction Applications: A Methodology Review. CoRR Sunyang Fu, David Chen, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Yanshan Wang, Liwei Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu
2019	J	`jnl`	Discovering associations between problem list and practice setting. BMC Medical Informatics Decis. Mak. Liwei Wang, Yanshan Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
2019	J	`jnl`	Ensembles of natural language processing systems for portable phenotyping solutions. J. Biomed. Informatics Cong Liu, Casey N. Ta, James R. Rogers, Ziran Li, Junghwan Lee, Alex M. Butler, Ning Shang, Fabricio Sampaio Peres Kury, Liwei Wang, Feichen Shen, Hongfang Liu, Lyudmila Ena, Carol Friedman, Chunhua Weng
2019	J	`jnl`	HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. J. Biomed. Informatics Feichen Shen, Suyuan Peng, Yadan Fan, Andrew Wen, Sijia Liu, Yanshan Wang, Liwei Wang, Hongfang Liu
2019	—	`conf`	Integrating word embedding neural networks with PubMed abstracts to extract keyword proximity of chronic diseases. BHI Ahmad P. Tafti, Yanshan Wang, Feichen Shen, Elham Sagheb, Paul R. Kingsbury, Hongfang Liu
2019	Misc	`conf`	Leveraging a Data-Driven Strategy to Enrich Rare Disease Knowledge. AMIA Feichen Shen, Yiqing Zhao, Hongfang Liu
2019	J	`jnl`	Rare disease knowledge enrichment through a data-driven approach. BMC Medical Informatics Decis. Mak. Feichen Shen, Yiqing Zhao, Liwei Wang, Majid Rastegar-Mojarad, Yanshan Wang, Sijia Liu, Hongfang Liu
2019	J	`jnl`	Special Issue on Healthcare Knowledge Discovery and Management. J. Heal. Informatics Res. Feichen Shen, Vipin Chaudhary, Yan Liu, Che Ngufor, Hongfang Liu
2019	J	`jnl`	Towards Semantic Big Graph Analytics for Cross-Domain Knowledge Discovery. CoRR Feichen Shen
2018	J	`jnl`	A Comparison of Word Embeddings for the Biomedical Natural Language Processing. CoRR Yanshan Wang, Sijia Liu, Naveed Afzal, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Paul R. Kingsbury, Hongfang Liu
2018	J	`jnl`	A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction. CoRR Yanshan Wang, Sunghwan Sohn, Sijia Liu, Feichen Shen, Liwei Wang, Elizabeth J. Atkinson, Shreyasee Amin, Hongfang Liu
2018	J	`jnl`	A comparison of word embeddings for the biomedical natural language processing. J. Biomed. Informatics Yanshan Wang, Sijia Liu, Naveed Afzal, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Paul R. Kingsbury, Hongfang Liu
2018	—	`conf`	Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility. BIBM Yiqing Zhao, Yanshan Wang, Henry Wang, Benjamin Yan, Feichen Shen, Kevin J. Peterson, Walter A. Rocca, Jennifer St. Sauver, Hongfang Liu
2018	—	`conf`	BioCreative/OHNLP Challenge 2018. BCB Majid Rastegar-Mojarad, Sijia Liu, Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Sunyang Fu, Hongfang Liu
2018	J	`jnl`	Clinical information extraction applications: A literature review. J. Biomed. Informatics Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sungrim Moon, Feichen Shen, Naveed Afzal, Sijia Liu, Yuqun Zeng, Saeed Mehrabi, Sunghwan Sohn, Hongfang Liu
2018	Misc	`conf`	Combining Knowledge and Data Driven Insights to Facilitate the Differential Diagnosis of Rare Diseases. AMIA Feichen Shen, Hongfang Liu
2018	—	`conf`	Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement. ICHI Workshops Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Andrew Wen, Andrew H. Limper, Hongfang Liu
2018	J	`jnl`	Detection of Surgical Site Infection Utilizing Automated Feature Generation in Clinical Notes. CoRR Feichen Shen, David W. Larson, James M. Naessens, Elizabeth B. Habermann, Hongfang Liu, Sunghwan Sohn
2018	J	`jnl`	Extracting chemical-protein relations using attention-based neural networks. Database J. Biol. Databases Curation Sijia Liu, Feichen Shen, Ravikumar Komandur Elayavilli, Yanshan Wang, Majid Rastegar-Mojarad, Vipin Chaudhary, Hongfang Liu
2018	Misc	`conf`	Incorporating Knowledge-Driven Insights into a Collaborative Filtering Model to Facilitate the Differential Diagnosis of Rare Diseases. AMIA Feichen Shen, Hongfang Liu
2018	—	`conf`	Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome. BIBM Su-Yuan Peng, Yadan Fan, Liwei Wang, Andrew Wen, Xusheng Liu, Hongfang Liu, Feichen Shen
2018	J	`jnl`	MedSTS: A Resource for Clinical Semantic Textual Similarity. CoRR Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
2018	J	`jnl`	MedTQ: Dynamic Topic Discovery and Query Generation for Medical Ontologies. CoRR Feichen Shen, Yugyung Lee
2018	—	`conf`	Predicting Practice Setting Using Topic Modeling. ICHI Workshops Liwei Wang, Yanshan Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
2017	Misc	`conf`	A Resource for Clinical Semantic Textual Similarity. AMIA Naveed Afzal, Yanshan Wang, Feichen Shen, Liwei Wang, Hongfang Liu
2017	Misc	`conf`	Accelerating Rare Disease Diagnosis with Collaborative Filtering. AMIA Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Naveed Afzal, Hongfang Liu
2017	—	`conf`	Content Analysis of Free-Text Family History. CRI Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sijia Liu, Feichen Shen, Hongfang Liu
2017	—	`conf`	Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature. BCB Yanshan Wang, Sijia Liu, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Fei Liu, Hongfang Liu
2017	Misc	`conf`	Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis. AMIA Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Naveed Afzal, Hongfang Liu
2017	—	`conf`	MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for Keyphrase Classification in Scientific Publications. SemEval@ACL Sijia Liu, Feichen Shen, Vipin Chaudhary, Hongfang Liu
2017	—	`conf`	Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients. BIBM Sungrim Moon, Sijia Liu, Paul R. Kingsbury, David Chen, Yanshan Wang, Feichen Shen, Rajeev Chaudhry, Hongfang Liu
2017	Misc	`conf`	Mining Hierarchies and Similarity Clusters from Value Set Repositories. AMIA Kevin J. Peterson, Guoqian Jiang, Scott M. Brue, Feichen Shen, Hongfang Liu
2017	J	`jnl`	Need of informatics in designing interoperable clinical registries. Int. J. Medical Informatics Majid Rastegar-Mojarad, Sunghwan Sohn, Liwei Wang, Feichen Shen, Troy C. Bleeker, William A. Cliby, Hongfang Liu
2017	—	`conf`	On Mapping Textual Queries to a Common Data Model. ICHI Sijia Liu, Yanshan Wang, Na Hong, Feichen Shen, Stephen T. Wu, William R. Hersh, Hongfang Liu
2017	—	`conf`	Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology. MedInfo Feichen Shen, Liwei Wang, Hongfang Liu
2017	—	`conf`	Populating Physician Biographical Pages Based on EMR Data. CRI Feichen Shen, Sunghwan Sohn, Majid Rastegar-Mojarad, Sijia Liu, Joshua J. Pankratz, Michael Hatton, Nancy Sowada, Om Shrestha, Shawna Shurson, Hongfang Liu
2017	Misc	`conf`	Recommending education materials for diabetic questions using information retrieval approaches. AMIA Yuqun Zeng, Yanshan Wang, Feichen Shen, Sijia Liu, Liwei Wang, Majid Rastegar-Mojarad, Xusheng Liu, Hongfang Liu
2017	Misc	`conf`	Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles. AMIA Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Hongfang Liu
2017	—	`conf`	Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes. MedInfo Feichen Shen, Liwei Wang, Hongfang Liu
2015	—	`conf`	A pervasive framework for real-time activity patterns of mobile users. PerCom Workshops Feichen Shen
2015	—	`conf`	BmQGen: Biomedical query generator for knowledge discovery. BIBM Feichen Shen, Hongfang Liu, Sunghwan Sohn, David W. Larson, Yugyung Lee
2015	J	`jnl`	Collaborative Mobile-Cloud Computing for Civil Infrastructure Condition Inspection. J. Comput. Civ. Eng. Zhiqiang Chen, Jianfei Chen, Feichen Shen, Yugyung Lee
2015	—	`conf`	PEMAR: A pervasive middleware for activity recognition with smart phones. PerCom Workshops Prakash Vaka, Feichen Shen, Mayanka Chandrashekar, Yugyung Lee
2015	—	`conf`	SAMAF: Situation aware mobile apps framework. PerCom Workshops Feichen Shen, Yugyung Lee
2014	Misc	`conf`	Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. Pacific Symposium on Biocomputing Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute
2014	Misc	`conf`	Reducing the Screening Burden of Systematic Review with a Multiple-level Relevance Ranking System. AMIA Dingcheng Li, Zhen Wang, Feichen Shen, Mohammad Hassan Murad, Hongfang Liu
2014	J	`jnl`	SMARTSPACE: Multiagent Based Distributed Platform for Semantic Service Discovery. IEEE Trans. Syst. Man Cybern. Syst. Sourish Dasgupta, Anoop Aroor, Feichen Shen, Yugyung Lee
2014	—	`conf`	Towards a multi-level framework for supporting systematic review - A pilot study. BIBM Dingcheng Li, Zhen Wang, Feichen Shen, Mohammad Hassan Murad, Hongfang Liu
2014	—	`conf`	Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data. BHI Feichen Shen, Dingcheng Li, Hongfang Liu, Yugyung Lee, Jyotishman Pathak, Christopher G. Chute, Cui Tao
2013	—	`conf`	An integrative computational approach to identify disease-specific networks from PubMed literature information. BIBM Yuji Zhang, Dingcheng Li, Cui Tao, Feichen Shen, Hongfang Liu
2013	—	`conf`	Phenotyping on EHR Data Using OWL and Semantic Web Technologies. ICSH Cui Tao, Dingcheng Li, Feichen Shen, Zonghui Lian, Jyotishman Pathak, Hongfang Liu, Christopher G. Chute