Fei Guo - RankMe

176 papers A* 11A 3B 2Misc 3Journal 132Unranked 24

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	CCTAD: A topologically associating domains detection method integrating convolutional autoencoder and hierarchical clustering. Comput. Biol. Chem. Rui-Ping Feng, Junwei Luo, Kaihua Liu, Fei Guo
2026	A*	`conf`	Closer to Biological Mechanism: Drug-Drug Interaction Prediction from the Perspective of Pharmacophore. AAAI Mingliang Dou, Linfeng Wen, Jinyang Xie, Jijun Tang, Shiqiang Ma, Fei Guo
2026	A*	`conf`	DualDis: A Dual Disentanglement Network for Vehicle Re-identification. WWW Wenying He, Feiyu Wang, Guangquan Xu, Yude Bai, Fei Guo
2026	J	`jnl`	EdgeCLIP: Injecting Edge-Awareness Into Visual-Language Models for Zero-Shot Semantic Segmentation. IEEE Trans. Circuits Syst. Video Technol. Jiaxiang Fang, Shiqiang Ma, Guihua Duan, Fei Guo, Shengfeng He
2026	A*	`conf`	Geometry-Aware Variational Information Maximization for Deep Incomplete Multi-view Clustering. AAAI Wenlan Chen, Lu Gao, Daoyuan Wang, Fei Guo, Cheng Liang
2026	J	`jnl`	High-order correlation and consistency-aware multi-view clustering via anchor graph learning. Neural Networks Cheng Liang, Wenchao Zang, Daoyuan Wang, Fei Guo
2026	A*	`conf`	Make Foundation Models Trustworthy Again: Causal Fine-Adaptation for Medical Image Segmentation. AAAI Hongpeng Yang, Yingxin Chen, Shiqiang Ma, Fei Guo
2026	J	`jnl`	MultiPert: An adversarial alignment and dual attention framework for single-cell multi-omics perturbation prediction. PLoS Comput. Biol. Mengyuan Zhao, Xinyue Tang, Jiawei Li, Cheng Liang, Jijun Tang, Fei Guo
2026	A*	`conf`	PharmaQA: Prompt-Based Molecular Representation Learning via Pharmacophore-Oriented Question Answering. AAAI Chengwei Ai, Qiaozhen Meng, Mengwei Sun, Ruihan Dong, Hongpeng Yang, Shiqiang Ma, Xiaoyi Liu, Cheng Liang, Fei Guo
2026	A*	`conf`	Piercing the Fog: Disentangling Key Features for Vision Models in Multi-Degradation Scenarios. AAAI Siyu Chen, Shiqiang Ma, Fei Guo
2026	J	`jnl`	Refprogen: a reference-guided molecular generation model with protein-ligand joint representation for property-aware drug design. Expert Syst. Appl. Xiaoyi Liu, Na Zhang, Chengwei Ai, Jijun Tang, Fei Guo
2025	J	`jnl`	2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model. Bioinform. Qianpei Liu, Min Zeng, Yiming Li, Chengqian Lu, Shichao Kan, Fei Guo, Min Li
2025	J	`jnl`	A novel cross-model framework for modelling urban multi-hydrological processes based on hydrogeographic elements in urban areas. Environ. Model. Softw. Haocheng Wang, Zhuo Zhang, Songshan Yue, Fei Guo, Yongning Wen, Min Chen, Guonian Lü
2025	A	`conf`	Beyond Slice-by-Slice: 3D Lesion Segmentation via Cross-Frame Prediction. ECAI Hongpeng Yang, Yingxin Chen, Xiangyu Hu, Srihari Nelakuditi, Yan Tong, Shiqiang Ma, Fei Guo
2025	J	`jnl`	Block sparse Bayes-based fuzzy system for RNA N6-methyladenosine sites prediction. PLoS Comput. Biol. Leyao Wang, Mengyuan Zhao, Hao Xie, Yuqing Qian, Wenhuan Lu, Yijie Ding, Fei Guo
2025	J	`jnl`	Cancer survival prediction based on soft-label guided contrastive learning and global feature fusion. Bioinform. Huiying Jiang, Wenlan Chen, Fei Guo, Cheng Liang
2025	A	`conf`	Catching mRNA's Hiddens Marks: A Dual-Path Network by Contrastive Learning for N4-acetylcytidine Prediction. ECAI Wenying He, Yu Han, Haolu Zhou, Yun Zuo, Yude Bai, Fei Guo
2025	J	`jnl`	CellCircLoc: Deep Neural Network for Predicting and Explaining Cell Line-Specific CircRNA Subcellular Localization. IEEE J. Biomed. Health Informatics Min Zeng, Jingwei Lu, Yiming Li, Chengqian Lu, Shichao Kan, Fei Guo, Min Li
2025	A*	`conf`	Deep Variational Incomplete Multi-View Clustering with Information-Theoretic Guidance. ACM Multimedia Wenlan Chen, Lu Gao, Cheng Liang, Fei Guo
2025	J	`jnl`	Diff-SE: A Diffusion-Augmented Contrastive Learning Framework for Super-Enhancer Prediction. J. Chem. Inf. Model. Haolu Zhou, Yu Han, Yude Bai, Yun Zuo, Wenying He, Fei Guo
2025	A*	`conf`	Dual-Level Distribution Alignment for Deep Incomplete Multi-View Clustering. ACM Multimedia Fujian Ren, Wenlan Chen, Lu Gao, Fei Guo, Cheng Liang
2025	J	`jnl`	HyperPhS: a pharmacophore-guided multimodal representation framework for metabolic stability prediction through contrastive hypergraph learning. Bioinform. Xiaoyi Liu, Na Zhang, Chenglong Kang, Chengwei Ai, Hongpeng Yang, Jijun Tang, Fei Guo
2025	A*	`conf`	Image-Enhanced Hybrid Encoding with Reinforced Contrastive Learning for Spatial Domain Identification in Spatial Transcriptomics. IJCAI Daoyuan Wang, Lu Gao, Wenlan Chen, Cheng Liang, Fei Guo
2025	—	`conf`	LGATFormer: A Dual-Path Model Combining Line Graph Attention and Transformer for Gene Regulatory Network Inference. BIBM Wenying He, Yaowei Zhu, Rentao Zhang, Haolu Zhou, Yude Bai, Fei Guo
2025	J	`jnl`	Leveraging protein language models for cross-variant CRISPR/Cas9 sgRNA activity prediction. Bioinform. Yalin Hou, Yiming Li, Ruiqing Zheng, Fuhao Zhang, Fei Guo, Min Li, Min Zeng
2025	—	`conf`	MF-DocDDI: Drug Entity Multi-Feature Fusion for Document-Level Drug-Drug Interaction Relation Extraction. BIBM Han Han, Mingliang Dou, Jijun Tang, Fei Guo
2025	—	`conf`	MolInterAct: Multiscale Cross-Modal Interaction for Robust Molecular Representation Learning. BIBM Mengwei Sun, Chengwei Ai, Diya Zhang, Xiaoyi Liu, Qiaozhen Meng, Shiqiang Ma, Fei Guo
2025	—	`conf`	MultiPepDec: Decoupled Prompt Learning for Multi-Activity Therapeutic Peptides. BIBM Xingdan Wang, Diya Zhang, Chengwei Ai, Shiqiang Ma, Qiaozhen Meng, Junwen Duan, Fei Guo
2025	J	`jnl`	PEFN: A Patches Enhancement and Hierarchical Fusion Network for Robust Vehicle Reidentification. IEEE Internet Things J. Wenying He, Feiyu Wang, Yude Bai, Neal N. Xiong, Guangquan Xu, Fei Guo
2025	J	`jnl`	Prediction of ncRNA-Disease Association Based on Correntropy Induced Loss Matrix Factorization Model. IEEE Trans. Comput. Biol. Bioinform. Ping Li, Yuqing Qian, Junhai Xu, Yijie Ding, Fei Guo
2025	J	`jnl`	RNALoc-LM: RNA subcellular localization prediction using pre-trained RNA language model. Bioinform. Min Zeng, Xinyu Zhang, Yiming Li, Chengqian Lu, Rui Yin, Fei Guo, Min Li
2025	A*	`conf`	RetroInText: A Multimodal Large Language Model Enhanced Framework for Retrosynthetic Planning via In-Context Representation Learning. ICLR Chenglong Kang, Xiaoyi Liu, Fei Guo
2025	Misc	`conf`	Self-Support Prototype-Aware For Few-Shot Semantic Segmentation. ICASSP Jiaxiang Fang, Shiqiang Ma, Shengfeng He, Fei Guo
2025	J	`jnl`	Structured Sparse Regularization-Based Deep Fuzzy Networks for RNA N6-Methyladenosine Sites Prediction. IEEE Trans. Fuzzy Syst. Leyao Wang, Yuqing Qian, Hao Xie, Yijie Ding, Fei Guo
2025	A*	`conf`	Unlocking Dark Vision Potential for Medical Image Segmentation. IJCAI Hongpeng Yang, Xiangyu Hu, Yingxin Chen, Siyu Chen, Srihari Nelakuditi, Yan Tong, Shiqiang Ma, Fei Guo
2025	J	`jnl`	deepTAD: an approach for identifying topologically associated domains based on convolutional neural network and transformer model. Briefings Bioinform. Xiaoyan Wang, Junwei Luo, Lili Wu, Huimin Luo, Fei Guo
2025	J	`jnl`	scMID: A Deep Multi-Omics Integration Framework for Comprehensive Single-Cell Data Analysis. IEEE Trans. Comput. Biol. Bioinform. Qiu Xiao, Yan Zhang, Wanwan Shi, Li Wang, Ying Zuo, Fei Guo, Jiawei Luo
2024	J	`jnl`	A generalizable framework for unlocking missing reactions in genome-scale metabolic networks using deep learning. CoRR Xiaoyi Liu, Hongpeng Yang, Chengwei Ai, Ruihan Dong, Yijie Ding, Qianqian Yuan, Jijun Tang, Fei Guo
2024	J	`jnl`	Aggregate-aware model with bidirectional edge generation for medical image segmentation. Appl. Soft Comput. Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2024	J	`jnl`	Boundary-Aware Dual Biaffine Model for Sequential Sentence Classification in Biomedical Documents. IEEE ACM Trans. Comput. Biol. Bioinform. Junwen Duan, Huai Guo, Han Jiang, Fei Guo, Jian-Xin Wang
2024	—	`conf`	ComLMEss: Combining multiple protein language models enables accurate essential protein prediction. BIBM Xu Liu, Yiming Li, Fuhao Zhang, Ruiqing Zheng, Fei Guo, Min Li, Min Zeng
2024	J	`jnl`	DMAMP: A Deep-Learning Model for Detecting Antimicrobial Peptides and Their Multi-Activities. IEEE ACM Trans. Comput. Biol. Bioinform. Qiaozhen Meng, Genlang Chen, Bin Lin, Shixin Zheng, Yulai Lin, Jijun Tang, Fei Guo
2024	—	`conf`	DP-BERT: a pre-trained deep language model for depression prediction using microarray data. BIBM Junyu Gao, Min Zeng, Yiming Li, Fang Wang, Ruiqing Zheng, Jin Liu, Fei Guo, Min Li
2024	J	`jnl`	Drug-Drug Interaction Relation Extraction Based on Deep Learning: A Review. ACM Comput. Surv. Mingliang Dou, Jijun Tang, Prayag Tiwari, Yijie Ding, Fei Guo
2024	J	`jnl`	EPIMR: Prediction of Enhancer-Promoter Interactions by Multi-Scale ResNet on Image Representation. Big Data Min. Anal. Qiaozhen Meng, Yinuo Lyu, Xiaoqing Peng, Junhai Xu, Jijun Tang, Fei Guo
2024	J	`jnl`	Fuzzy Neural Tangent Kernel Model for Identifying DNA N4-Methylcytosine Sites. IEEE Trans. Fuzzy Syst. Yijie Ding, Prayag Tiwari, Fei Guo, Quan Zou, Weiping Ding
2024	J	`jnl`	Graph-Based Fusion of Imaging, Genetic and Clinical Data for Degenerative Disease Diagnosis. IEEE ACM Trans. Comput. Biol. Bioinform. Rui Guo, Xu Tian, Hanhe Lin, Stephen J. McKenna, Hong-Dong Li, Fei Guo, Jin Liu
2024	J	`jnl`	Identification of Drug-Side-Effect Association via Multiview Semisupervised Sparse Model. IEEE Trans. Artif. Intell. Yijie Ding, Fei Guo, Prayag Tiwari, Quan Zou
2024	J	`jnl`	MTMol-GPT: De novo multi-target molecular generation with transformer-based generative adversarial imitation learning. PLoS Comput. Biol. Chengwei Ai, Hongpeng Yang, Xiaoyi Liu, Ruihan Dong, Yijie Ding, Fei Guo
2024	J	`jnl`	MuSE: A deep learning model based on multi-feature fusion for super-enhancer prediction. Comput. Biol. Chem. Wenying He, Haolu Zhou, Yun Zuo, Yude Bai, Fei Guo
2024	—	`conf`	Multi-Task Driven Multi-Level Dynamical Fusion for Single-Cell Multi-Omics Cell Type Annotation. BIBM Jiawei Li, Shizhan Chen, Zongbo Han, Wei Li, Jijun Tang, Fei Guo
2024	J	`jnl`	NBCR-ac4C: A Deep Learning Framework Based on Multivariate BERT for Human mRNA N4-Acetylcytidine Sites Prediction. J. Chem. Inf. Model. Wenying He, Yu Han, Yun Zuo, Yude Bai, Fei Guo
2024	J	`jnl`	PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection. IEEE ACM Trans. Comput. Biol. Bioinform. Ke Ma, Jiawei Li, Mengyuan Zhao, Ibrahim Zamit, Bin Lin, Fei Guo, Jijun Tang
2024	J	`jnl`	RGCNPPIS: A Residual Graph Convolutional Network for Protein-Protein Interaction Site Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. Jian Zhong, Haochen Zhao, Qichang Zhao, Ruikang Zhou, Lishen Zhang, Fei Guo, Jianxin Wang
2024	J	`jnl`	Rapid screening of multi-point mutations for enzyme thermostability modification by utilizing computational tools. Future Gener. Comput. Syst. Jia Jin, Qiaozhen Meng, Min Zeng, Guihua Duan, Ercheng Wang, Fei Guo
2024	J	`jnl`	RetroCaptioner: beyond attention in end-to-end retrosynthesis transformer via contrastively captioned learnable graph representation. Bioinform. Xiaoyi Liu, Chengwei Ai, Hongpeng Yang, Ruihan Dong, Jijun Tang, Shuangjia Zheng, Fei Guo
2024	J	`jnl`	Robust Tensor Subspace Learning for Incomplete Multi-View Clustering. IEEE Trans. Knowl. Data Eng. Cheng Liang, Daoyuan Wang, Huaxiang Zhang, Shichao Zhang, Fei Guo
2024	—	`conf`	SiamSegNet: A multimodal Segmentation Method Based on Cross-modal Generation for Medical Image Segmentation. DASFAA (3) Shiqiang Ma, Fei Guo, Jijun Tang
2024	J	`jnl`	Structured Sparse Regularization based Random Vector Functional Link Networks for DNA N4-methylcytosine sites prediction. Expert Syst. Appl. Hao Xie, Yijie Ding, Yuqing Qian, Prayag Tiwari, Fei Guo
2024	J	`jnl`	TranSiam: Aggregating multi-modal visual features with locality for medical image segmentation. Expert Syst. Appl. Xuejian Li, Shiqiang Ma, Junhai Xu, Jijun Tang, Shengfeng He, Fei Guo
2024	J	`jnl`	Weighted Fuzzy System for Identifying DNA N4-Methylcytosine Sites With Kernel Entropy Component Analysis. IEEE Trans. Artif. Intell. Leyao Wang, Prayag Tiwari, Yijie Ding, Fei Guo
2024	J	`jnl`	scRNMF: An imputation method for single-cell RNA-seq data by robust and non-negative matrix factorization. PLoS Comput. Biol. Yuqing Qian, Quan Zou, Mengyuan Zhao, Yi Liu, Fei Guo, Yijie Ding
2023	J	`jnl`	A deep multiple kernel learning-based higher-order fuzzy inference system for identifying DNA N4-methylcytosine sites. Inf. Sci. Leyao Wang, Yijie Ding, Prayag Tiwari, Junhai Xu, Wenhuan Lu, Khan Muhammad, Victor Hugo C. de Albuquerque, Fei Guo
2023	J	`jnl`	A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization. Expert Syst. Appl. Jiaqi Ding, Junhai Xu, Jianguo Wei, Jijun Tang, Fei Guo
2023	J	`jnl`	ComDock: A novel approach for protein-protein docking with an efficient fusing strategy. Comput. Biol. Medicine Qiaozhen Meng, Fei Guo, Ercheng Wang, Jijun Tang
2023	J	`jnl`	Development of a component-based integrated modeling framework for urban flood simulation. Environ. Model. Softw. Haocheng Wang, Songshan Yue, Zhuo Zhang, Fei Guo, Yongning Wen, Min Chen, Guonian Lü
2023	—	`conf`	Enhancing Database Principles Teaching with ChatGPT-Like Language Models. ICCSE (1) Junwen Duan, Fei Guo, Jin Liu, Hongdong Li
2023	J	`jnl`	GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation. Briefings Bioinform. Min Li, Baoying Zhao, Rui Yin, Chengqian Lu, Fei Guo, Min Zeng
2023	J	`jnl`	IK-DDI: a novel framework based on instance position embedding and key external text for DDI extraction. Briefings Bioinform. Mingliang Dou, Jiaqi Ding, Genlang Chen, Junwen Duan, Fei Guo, Jijun Tang
2023	J	`jnl`	Identification of DNA N4-methylcytosine Sites via Multiview Kernel Sparse Representation Model. IEEE Trans. Artif. Intell. Chengwei Ai, Prayag Tiwari, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2023	J	`jnl`	Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model. Briefings Bioinform. Qiaozhen Meng, Fei Guo, Jijun Tang
2023	J	`jnl`	Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm. IEEE ACM Trans. Comput. Biol. Bioinform. Yijie Ding, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2023	J	`jnl`	Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association. IEEE ACM Trans. Comput. Biol. Bioinform. Chengwei Ai, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2023	J	`jnl`	MVML-MPI: Multi-View Multi-Label Learning for Metabolic Pathway Inference. Briefings Bioinform. Xiaoyi Liu, Hongpeng Yang, Chengwei Ai, Yijie Ding, Fei Guo, Jijun Tang
2023	—	`conf`	MixUNet: Mix the 2D and 3D Models for Robust Medical Image Segmentation. BIBM Jiawei Li, Shizhan Chen, Shiqiang Ma, Fei Guo, Jijun Tang
2023	J	`jnl`	Multi-View Kernel Sparse Representation for Identification of Membrane Protein Types. IEEE ACM Trans. Comput. Biol. Bioinform. Yuqing Qian, Yijie Ding, Quan Zou, Fei Guo
2023	J	`jnl`	Multi-correntropy fusion based fuzzy system for predicting DNA N4-methylcytosine sites. Inf. Fusion Yijie Ding, Prayag Tiwari, Fei Guo, Quan Zou
2023	J	`jnl`	Multi-view unsupervised feature selection with tensor robust principal component analysis and consensus graph learning. Pattern Recognit. Cheng Liang, Lianzhi Wang, Li Liu, Huaxiang Zhang, Fei Guo
2023	J	`jnl`	Pmf-cpi: assessing drug selectivity with a pretrained multi-functional model for compound-protein interactions. J. Cheminformatics Nan Song, Ruihan Dong, Yuqian Pu, Ercheng Wang, Junhai Xu, Fei Guo
2023	—	`conf`	Training Methods of Innovative Talents in Medical Imaging Informatics Under the Background of New Engineering. ICCSE (3) Jin Liu, Qian Bi, Ping Zhong, Hong-Dong Li, Fei Guo, Junwen Duan
2022	J	`jnl`	A hybrid deep learning framework for gene regulatory network inference from single-cell transcriptomic data. Briefings Bioinform. Mengyuan Zhao, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2022	J	`jnl`	A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases. Neurocomputing Chengwei Ai, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2022	—	`conf`	BP-DDI: Drug-drug interaction prediction based on biological information and pharmacological text. BIBM Mingliang Dou, Han Han, Genlang Chen, Fei Guo, Jijun Tang
2022	J	`jnl`	C-Loss Based Higher Order Fuzzy Inference Systems for Identifying DNA N4-Methylcytosine Sites. IEEE Trans. Fuzzy Syst. Yijie Ding, Prayag Tiwari, Quan Zou, Fei Guo, Hari Mohan Pandey
2022	J	`jnl`	DeepBLI: A Transferable Multichannel Model for Detecting β-Lactamase-Inhibitor Interaction. J. Chem. Inf. Model. Ruihan Dong, Hongpeng Yang, Chengwei Ai, Guihua Duan, Jianxin Wang, Fei Guo
2022	J	`jnl`	DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information Fusion and Hybrid Deep-Learning Ensemble Model. IEEE ACM Trans. Comput. Biol. Bioinform. Yuqian Pu, Jiawei Li, Jijun Tang, Fei Guo
2022	J	`jnl`	EAA-Net: Rethinking the Autoencoder Architecture with Intra-class Features for Medical Image Segmentation. CoRR Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2022	J	`jnl`	HDIContact: a novel predictor of residue-residue contacts on hetero-dimer interfaces via sequential information and transfer learning strategy. Briefings Bioinform. Wei Zhang, Qiaozhen Meng, Jianxin Wang, Fei Guo
2022	—	`ed.`	IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022, Las Vegas, NV, USA, December 6-8, 2022 BIBM Donald A. Adjeroh, Qi Long, Xinghua Mindy Shi, Fei Guo, Xiaohua Hu, Srinivas Aluru, Giri Narasimhan, Jianxin Wang, Mingon Kang, Ananda Mondal, Jin Liu
2022	J	`jnl`	Identification of DNA N4-methylcytosine sites via fuzzy model on self representation. Appl. Soft Comput. Leyao Wang, Yijie Ding, Junhai Xu, Wenhuan Lu, Jijun Tang, Fei Guo
2022	J	`jnl`	Identification of drug-side effect association via restricted Boltzmann machines with penalized term. Briefings Bioinform. Yuqing Qian, Yijie Ding, Quan Zou, Fei Guo
2022	J	`jnl`	Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization. Briefings Bioinform. Yijie Ding, Jijun Tang, Fei Guo, Quan Zou
2022	J	`jnl`	Identification of protein-nucleotide binding residues via graph regularized k-local hyperplane distance nearest neighbor model. Appl. Intell. Yijie Ding, Chao Yang, Jijun Tang, Fei Guo
2022	J	`jnl`	Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning. IEEE ACM Trans. Comput. Biol. Bioinform. Haohao Zhou, Hao Wang, Jijun Tang, Yijie Ding, Fei Guo
2022	J	`jnl`	Inferring gene regulatory network via fusing gene expression image and RNA-seq data. Bioinform. Xuejian Li, Shiqiang Ma, Jin Liu, Jijun Tang, Fei Guo
2022	J	`jnl`	Inferring human microbe-drug associations via multiple kernel fusion on graph neural network. Knowl. Based Syst. Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2022	—	`conf`	Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data. BIBM Jiawei Li, Fan Yang, Fang Wang, Yu Rong, Peilin Zhao, Shizhan Chen, Jianhua Yao, Jijun Tang, Fei Guo
2022	J	`jnl`	Microbe-bridged disease-metabolite associations identification by heterogeneous graph fusion. Briefings Bioinform. Jitong Feng, Shengbo Wu, Hongpeng Yang, Chengwei Ai, Jianjun Qiao, Junhai Xu, Fei Guo
2022	—	`conf`	Multi-scale Neighborhood Attention Transformer on U-Net for Medical Image Segmentation. BIBM Nanxing Zhang, Shiqiang Ma, Xuejian Li, Jiahui Zhang, Jijun Tang, Fei Guo
2022	J	`jnl`	Res2Unet: A multi-scale channel attention network for retinal vessel segmentation. Neural Comput. Appl. Xuejian Li, Jiaqi Ding, Jijun Tang, Fei Guo
2022	J	`jnl`	Shared subspace-based radial basis function neural network for identifying ncRNAs subcellular localization. Neural Networks Yijie Ding, Prayag Tiwari, Fei Guo, Quan Zou
2022	J	`jnl`	Sparse regularized joint projection model for identifying associations of non-coding RNAs and human diseases. Knowl. Based Syst. Ping Li, Prayag Tiwari, Junhai Xu, Yuqing Qian, Chengwei Ai, Yijie Ding, Fei Guo
2022	J	`jnl`	String kernels construction and fusion: a survey with bioinformatics application. Frontiers Comput. Sci. Ren Qi, Fei Guo, Quan Zou
2022	J	`jnl`	TranSiam: Fusing Multimodal Visual Features Using Transformer for Medical Image Segmentation. CoRR Xuejian Li, Shiqiang Ma, Jijun Tang, Fei Guo
2022	J	`jnl`	Two-stage-vote ensemble framework based on integration of mutation data and gene interaction network for uncovering driver genes. Briefings Bioinform. Yingxin Kan, Limin Jiang, Yan Guo, Jijun Tang, Fei Guo
2021	A	`conf`	A Zero-Shot Method for 3D Medical Image Segmentation. ICME Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2021	J	`jnl`	A comprehensive overview and critical evaluation of gene regulatory network inference technologies. Briefings Bioinform. Mengyuan Zhao, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2021	J	`jnl`	A sequence-based multiple kernel model for identifying DNA-binding proteins. BMC Bioinform. Yuqing Qian, Limin Jiang, Yijie Ding, Jijun Tang, Fei Guo
2021	J	`jnl`	A spectral clustering with self-weighted multiple kernel learning method for single-cell RNA-seq data. Briefings Bioinform. Ren Qi, Jin Wu, Fei Guo, Lei Xu, Quan Zou
2021	J	`jnl`	AIEpred: An Ensemble Predictive Model of Classifier Chain to Identify Anti-Inflammatory Peptides. IEEE ACM Trans. Comput. Biol. Bioinform. Jinhao Zhang, Zehua Zhang, Lianrong Pu, Jijun Tang, Fei Guo
2021	J	`jnl`	CEPZ: A Novel Predictor for Identification of DNase I Hypersensitive Sites. IEEE ACM Trans. Comput. Biol. Bioinform. Yan Zheng, Hao Wang, Yijie Ding, Fei Guo
2021	J	`jnl`	CrystalM: A Multi-View Fusion Approach for Protein Crystallization Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. Yubo Wang, Yijie Ding, Jijun Tang, Yu Dai, Fei Guo
2021	J	`jnl`	DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences. Briefings Bioinform. Jiawei Li, Yuqian Pu, Jijun Tang, Quan Zou, Fei Guo
2021	—	`conf`	Document-level DDI relation extraction with document-entity embedding. BIBM Mingliang Dou, Jijun Tang, Fei Guo
2021	J	`jnl`	Drug-disease associations prediction via Multiple Kernel-based Dual Graph Regularized Least Squares. Appl. Soft Comput. Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2021	J	`jnl`	EP3: an ensemble predictor that accurately identifies type III secreted effectors. Briefings Bioinform. Jing Li, Leyi Wei, Fei Guo, Quan Zou
2021	J	`jnl`	Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment. Briefings Bioinform. Hao Wang, Jijun Tang, Yijie Ding, Fei Guo
2021	J	`jnl`	Exploring effectiveness of ab-initio protein-protein docking methods on a novel antibacterial protein complex dataset. Briefings Bioinform. Wei Zhang, Qiaozhen Meng, Jijun Tang, Fei Guo
2021	—	`conf`	GEU-Net: Rethinking the information transmission in the skip connection of U-Net architecture. BIBM Shiqiang Ma, Xuejian Li, Zehua Zhang, Jijun Tang, Fei Guo
2021	J	`jnl`	Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information. Neural Comput. Appl. Chao Yang, Yijie Ding, Qiaozhen Meng, Jijun Tang, Fei Guo
2021	J	`jnl`	Identification of drug-target interactions via multi-view graph regularized link propagation model. Neurocomputing Yijie Ding, Jijun Tang, Fei Guo
2021	—	`conf`	MIASNet: A medical image segmentation method predicting future based on past and current cases. BIBM Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2021	J	`jnl`	MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction. Briefings Bioinform. Wenying He, Jijun Tang, Quan Zou, Fei Guo
2021	—	`conf`	Multi-AMP: detecting the antimicrobial peptides and their activities using the multi-task learning. BIBM Qiaozhen Meng, Jijun Tang, Fei Guo
2021	J	`jnl`	Multi-Scale Time-Series Kernel-Based Learning Method for Brain Disease Diagnosis. IEEE J. Biomed. Health Informatics Zehua Zhang, Jiaqi Ding, Junhai Xu, Jijun Tang, Fei Guo
2021	J	`jnl`	Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution. Briefings Bioinform. Limin Jiang, Hui Yu, Jiawei Li, Jijun Tang, Yan Guo, Fei Guo
2021	J	`jnl`	Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation. IEEE ACM Trans. Comput. Biol. Bioinform. Yijie Ding, Jijun Tang, Fei Guo
2021	J	`jnl`	SubLocEP: a novel ensemble predictor of subcellular localization of eukaryotic mRNA based on machine learning. Briefings Bioinform. Jing Li, Lichao Zhang, Shida He, Fei Guo, Quan Zou
2021	J	`jnl`	iEnhancer-KL: A Novel Two-Layer Predictor for Identifying Enhancers by Position Specific of Nucleotide Composition. IEEE ACM Trans. Comput. Biol. Bioinform. Yinuo Lyu, Zhen Zhang, Jiawei Li, Wenying He, Yijie Ding, Fei Guo
2021	J	`jnl`	iPro2L-PSTKNC: A Two-Layer Predictor for Discovering Various Types of Promoters by Position Specific of Nucleotide Composition. IEEE J. Biomed. Health Informatics Yinuo Lyu, Wenying He, Shuhao Li, Quan Zou, Fei Guo
2020	—	`conf`	A Deep Supervision CNN Network for Brain Tumor Segmentation. BrainLes@MICCAI (2) Shiqiang Ma, Zehua Zhang, Jiaqi Ding, Xuejian Li, Jijun Tang, Fei Guo
2020	—	`conf`	An two-layer predictive model of ensemble classifier chain for detecting antimicrobial peptides. BIBM Jinhao Zhang, Shuhao Li, Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	CWLy-SVM: A support vector machine-based tool for identifying cell wall lytic enzymes. Comput. Biol. Chem. Chaolu Meng, Fei Guo, Quan Zou
2020	J	`jnl`	Critical evaluation of web-based prediction tools for human protein subcellular localization. Briefings Bioinform. Yinan Shen, Yijie Ding, Jijun Tang, Quan Zou, Fei Guo
2020	J	`jnl`	DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides. IEEE J. Biomed. Health Informatics Jiawei Li, Yuqian Pu, Jijun Tang, Quan Zou, Fei Guo
2020	J	`jnl`	Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation. Appl. Soft Comput. Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of Drug-Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion. Knowl. Based Syst. Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of Highest-Affinity Binding Sites of Yeast Transcription Factor Families. J. Chem. Inf. Model. Zongyu Wang, Wenying He, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of drug-target interactions via fuzzy bipartite local model. Neural Comput. Appl. Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of human microRNA-disease association via hypergraph embedded bipartite local model. Comput. Biol. Chem. Yijie Ding, Limin Jiang, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of membrane protein types via multivariate information fusion with Hilbert-Schmidt Independence Criterion. Neurocomputing Hao Wang, Yijie Ding, Jijun Tang, Fei Guo
2020	—	`conf`	Melanoma Classification in Dermoscopy Images via Ensemble Learning on Deep Neural Network. BIBM Jie Song, Jiawei Li, Shiqiang Ma, Jijun Tang, Fei Guo
2019	—	`conf`	Identification of DNA-Binding Proteins via Fuzzy Multiple Kernel Model and Sequence Information. ICIC (2) Yijie Ding, Jijun Tang, Fei Guo
2019	J	`jnl`	Identification of Drug-Side Effect Association via Semisupervised Model and Multiple Kernel Learning. IEEE J. Biomed. Health Informatics Yijie Ding, Jijun Tang, Fei Guo
2019	J	`jnl`	Identification of drug-side effect association via multiple information integration with centered kernel alignment. Neurocomputing Yijie Ding, Jijun Tang, Fei Guo
2019	J	`jnl`	Identifying protein-protein interface via a novel multi-scale local sequence and structural representation. BMC Bioinform. Fei Guo, Quan Zou, Guang Yang, Dan Wang, Jijun Tang, Junhai Xu
2019	J	`jnl`	LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information. IEEE Access Cong Shen, Yijie Ding, Jijun Tang, Limin Jiang, Fei Guo
2019	J	`jnl`	Taxonomy dimension reduction for colorectal cancer prediction. Comput. Biol. Chem. Kaiyang Qu, Feng Gao, Fei Guo, Quan Zou
2018	J	`jnl`	An approximation algorithm for maximum internal spanning tree. J. Comb. Optim. Zhi-Zhong Chen, Youta Harada, Fei Guo, Lusheng Wang
2018	J	`jnl`	Approximation algorithms for the scaffolding problem and its generalizations. Theor. Comput. Sci. Zhi-Zhong Chen, Youta Harada, Fei Guo, Lusheng Wang
2018	J	`jnl`	Detecting complexes from edge-weighted PPI networks via genes expression analysis. BMC Syst. Biol. Zehua Zhang, Jian Song, Jijun Tang, Xinying Xu, Fei Guo
2018	J	`jnl`	Progressive approach for SNP calling and haplotype assembly using single molecular sequencing data. Bioinform. Fei Guo, Dan Wang, Lusheng Wang
2017	B	`conf`	An Approximation Algorithm for Maximum Internal Spanning Tree. WALCOM Zhi-Zhong Chen, Youta Harada, Fei Guo, Lusheng Wang
2017	J	`jnl`	Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier. J. Chem. Inf. Model. Yijie Ding, Jijun Tang, Fei Guo
2017	J	`jnl`	Identification of drug-target interactions via multiple information integration. Inf. Sci. Yijie Ding, Jijun Tang, Fei Guo
2017	J	`jnl`	Improved prediction of protein-protein interactions using novel negative samples, features, and an ensemble classifier. Artif. Intell. Medicine Leyi Wei, Pengwei Xing, Jian-Cang Zeng, Jin-Xiu Chen, Ran Su, Fei Guo
2017	J	`jnl`	Improvement of phylogenetic method to analyze compositional heterogeneity. BMC Syst. Biol. Zehua Zhang, Kecheng Guo, Gaofeng Pan, Jijun Tang, Fei Guo
2016	Misc	`conf`	Better Approximation Algorithms for Scaffolding Problems. FAW Zhi-Zhong Chen, Youta Harada, Eita Machida, Fei Guo, Lusheng Wang
2016	J	`jnl`	Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats. CoRR Dan Wang, Shuaicheng Li, Fei Guo, Lusheng Wang
2016	J	`jnl`	Learning from real imbalanced data of 14-3-3 proteins binding specificity. Neurocomputing Zhao Li, Jijun Tang, Fei Guo
2016	J	`jnl`	Predicting protein-protein interactions via multivariate mutual information of protein sequences. BMC Bioinform. Yijie Ding, Jijun Tang, Fei Guo
2016	J	`jnl`	Protein-protein interface prediction based on hexagon structure similarity. Comput. Biol. Chem. Fei Guo, Yijie Ding, Shuai Cheng Li, Chao Shen, Lusheng Wang
2015	J	`jnl`	A novel multivariate performance optimization method based on sparse coding and hyper-predictor learning. CoRR Jiachen Yang, Zhiyong Ding, Fei Guo, Huogen Wang, Nick Hughes
2015	J	`jnl`	A novel multivariate performance optimization method based on sparse coding and hyper-predictor learning. Neural Networks Jiachen Yang, Zhiyong Ding, Fei Guo, Huogen Wang, Nick Hughes
2015	J	`jnl`	Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface. J. Chem. Inf. Model. Fei Guo, Yijie Ding, Zhao Li, Jijun Tang
2014	J	`jnl`	A multi-view image rectification algorithm for matrix camera arrangement. Artif. Intell. Res. Jiachen Yang, Fei Guo, Huogen Wang, Zhiyong Ding
2014	J	`jnl`	Multiview image rectification algorithm for parallel camera arrays. J. Electronic Imaging Jiachen Yang, Zhiyong Ding, Fei Guo, Huogen Wang
2014	J	`jnl`	Probabilistic Models for Capturing More Physicochemical Properties on Protein-Protein Interface. J. Chem. Inf. Model. Fei Guo, Shuai Cheng Li, Pufeng Du, Lusheng Wang
2013	B	`conf`	Detecting Protein Conformational Changes in Interactions via Scaling Known Structures. RECOMB Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang
2013	J	`jnl`	Detecting Protein Conformational Changes in Interactions via Scaling Known Structures. J. Comput. Biol. Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang
2013	Misc	`conf`	Self-converging camera arrays: Models and realization. ICNC Huogen Wang, Jiachen Wang, Zhiyong Ding, Fei Guo
2012	J	`jnl`	Computing the protein binding sites. BMC Bioinform. Fei Guo, Lusheng Wang
2012	—	`conf`	P-Binder: A System for the Protein-Protein Binding Sites Identification. ISBRA Fei Guo, Shuai Cheng Li, Lusheng Wang
2012	J	`jnl`	Protein-protein binding site identification by enumerating the configurations. BMC Bioinform. Fei Guo, Shuai Cheng Li, Lusheng Wang, Daming Zhu
2011	—	`conf`	Computing the Protein Binding Sites. ISBRA Fei Guo, Lusheng Wang
2011	J	`jnl`	Protein-Protein Binding Sites Prediction by 3D Structural Similarities. J. Chem. Inf. Model. Fei Guo, Shuai Cheng Li, Lusheng Wang