Federico Fogolari

20 papers A* 1B 1Journal 15Unranked 3

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Molecular electrostatics and pKa shifts calculations with the Generalized Born model. A tutorial through examples with Bluues2. Comput. Phys. Commun. Miguel A. Soler, Ozge Ozkilinc, Yamanappa Hunashal, Paolo Giannozzi, Gennaro Esposito, Federico Fogolari
2020	J	`jnl`	Generalized Born radii computation using linear models and neural networks. Bioinform. Saida S. Mohamed, Gennaro Esposito, Giuseppe Serra, Federico Fogolari
2018	J	`jnl`	PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles. J. Chem. Inf. Model. Federico Fogolari, Ornela Maloku, Cedrix Jurgal Dongmo Foumthuim, Alessandra Corazza, Gennaro Esposito
2016	J	`jnl`	Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data. J. Comput. Biol. Fabrizio Serra, Chiara Romualdi, Federico Fogolari
2015	J	`jnl`	Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes. J. Comput. Chem. Federico Fogolari, Alessandra Corazza, Gennaro Esposito
2012	J	`jnl`	Bluues server: electrostatic properties of wild-type and mutated protein structures. Bioinform. Ian Walsh, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C. E. Tosatto, Federico Fogolari
2012	J	`jnl`	Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii. BMC Bioinform. Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito
2012	J	`jnl`	Fast structure similarity searches among protein models: efficient clustering of protein fragments. Algorithms Mol. Biol. Federico Fogolari, Alessandra Corazza, Paolo Viglino, Gennaro Esposito
2011	A*	`conf`	Exploring Protein Fragment Assembly Using CLP. IJCAI Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2010	—	`conf`	CLP-based Protein Fragment Assembly. CILC Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2010	J	`jnl`	CLP-based protein fragment assembly CoRR Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2010	J	`jnl`	CLP-based protein fragment assembly. Theory Pract. Log. Program. Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2007	J	`jnl`	Agent-based protein structure prediction. Multiagent Grid Syst. Luca Bortolussi, Agostino Dovier, Federico Fogolari
2005	J	`jnl`	A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators. BMC Bioinform. Federico Fogolari, Silvio C. E. Tosatto, Giorgio Colombo
2004	J	`jnl`	Constraint Logic Programming approach to protein structure prediction. BMC Bioinform. Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
2004	B	`conf`	Protein Folding Simulation in CCP. ICLP Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
2003	J	`jnl`	Amino acid empirical contact energy definitions for fold recognition in the space of contact maps. BMC Bioinform. Marco Berrera, Henriette Molinari, Federico Fogolari
2003	—	`conf`	Protein Folding in CLP(FD) with Empirical Contact Energies. CSCLP Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
2002	—	`conf`	Using Secondary Structure Information for Protein Folding in CLP(FD). WFLP Agostino Dovier, Matteo Burato, Federico Fogolari
2001	J	`jnl`	Molecular mechanics and dynamics of biomolecules using a solvent continuum model. J. Comput. Chem. Federico Fogolari, Gennaro Esposito, Paolo Viglino, Henriette Molinari