Federico Fogolari

20 papers A* 1B 1Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
Molecular electrostatics and pKa shifts calculations with the Generalized Born model. A tutorial through examples with Bluues2.
Comput. Phys. Commun.
Miguel A. Soler, Ozge Ozkilinc, Yamanappa Hunashal, Paolo Giannozzi, Gennaro Esposito, Federico Fogolari
2020 J jnl
Generalized Born radii computation using linear models and neural networks.
Bioinform.
Saida S. Mohamed, Gennaro Esposito, Giuseppe Serra, Federico Fogolari
2018 J jnl
PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles.
J. Chem. Inf. Model.
Federico Fogolari, Ornela Maloku, Cedrix Jurgal Dongmo Foumthuim, Alessandra Corazza, Gennaro Esposito
2016 J jnl
Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data.
J. Comput. Biol.
Fabrizio Serra, Chiara Romualdi, Federico Fogolari
2015 J jnl
Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes.
J. Comput. Chem.
Federico Fogolari, Alessandra Corazza, Gennaro Esposito
2012 J jnl
Bluues server: electrostatic properties of wild-type and mutated protein structures.
Bioinform.
Ian Walsh, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C. E. Tosatto, Federico Fogolari
2012 J jnl
Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii.
BMC Bioinform.
Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito
2012 J jnl
Fast structure similarity searches among protein models: efficient clustering of protein fragments.
Algorithms Mol. Biol.
Federico Fogolari, Alessandra Corazza, Paolo Viglino, Gennaro Esposito
2011 A* conf
Exploring Protein Fragment Assembly Using CLP.
IJCAI
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2010 — conf
CLP-based Protein Fragment Assembly.
CILC
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2010 J jnl
CLP-based protein fragment assembly
CoRR
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2010 J jnl
CLP-based protein fragment assembly.
Theory Pract. Log. Program.
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
2007 J jnl
Agent-based protein structure prediction.
Multiagent Grid Syst.
Luca Bortolussi, Agostino Dovier, Federico Fogolari
2005 J jnl
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.
BMC Bioinform.
Federico Fogolari, Silvio C. E. Tosatto, Giorgio Colombo
2004 J jnl
Constraint Logic Programming approach to protein structure prediction.
BMC Bioinform.
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
2004 B conf
Protein Folding Simulation in CCP.
ICLP
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
2003 J jnl
Amino acid empirical contact energy definitions for fold recognition in the space of contact maps.
BMC Bioinform.
Marco Berrera, Henriette Molinari, Federico Fogolari
2003 — conf
Protein Folding in CLP(FD) with Empirical Contact Energies.
CSCLP
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
2002 — conf
Using Secondary Structure Information for Protein Folding in CLP(FD).
WFLP
Agostino Dovier, Matteo Burato, Federico Fogolari
2001 J jnl
Molecular mechanics and dynamics of biomolecules using a solvent continuum model.
J. Comput. Chem.
Federico Fogolari, Gennaro Esposito, Paolo Viglino, Henriette Molinari