Fatemeh Zare-Mirakabad

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2025 J jnl
Molecular landscape of endometrioid Cancer: Integrating multiomics and deep learning for personalized survival prediction.
Comput. Biol. Medicine
Behnaz Haji Molla Hoseyni, Hossein Lanjanian, Yasaman Zohrab Beigi, Mahdieh Salimi, Fatemeh Zare-Mirakabad, Ali Masoudi-Nejad
2025 J jnl
PHLA-SiNet: A novel peptide-HLA binding prediction model using heterogeneous Siamese neural networks.
Comput. Biol. Medicine
Maryam Nazarloo, Mahsa Saadat, Fatemeh Zare-Mirakabad
2025 J jnl
SimPep and OP-AND: A deep learning framework and curated database for predicting osteogenic peptides.
PLoS Comput. Biol.
Maryam Ghobakhloo, Zahra Ghorbanali, Fatemeh Zare-Mirakabad, Roya Abbaszadeh, Mohammad Taheri-Ledari, Bahman Zeynali
2024 J jnl
A novel data augmentation approach for influenza A subtype prediction based on HA proteins.
Comput. Biol. Medicine
Mohammad Amin Sohrabi, Fatemeh Zare-Mirakabad, Saeed Shiri Ghidary, Mahsa Saadat, Seyed-Ali Sadegh-Zadeh
2023 J jnl
DrugRep-HeSiaGraph: when heterogenous siamese neural network meets knowledge graphs for drug repurposing.
BMC Bioinform.
Zahra Ghorbanali, Fatemeh Zare-Mirakabad, Najmeh Salehi, Mohammad Akbari, Ali Masoudi-Nejad
2023 J jnl
DrugRep-KG: Toward Learning a Unified Latent Space for Drug Repurposing Using Knowledge Graphs.
J. Chem. Inf. Model.
Zahra Ghorbanali, Fatemeh Zare-Mirakabad, Mohammad Akbari, Najmeh Salehi, Ali Masoudi-Nejad
2022 J jnl
Protein sequence profile prediction using ProtAlbert transformer.
Comput. Biol. Chem.
Armin Behjati, Fatemeh Zare-Mirakabad, Seyed Shahriar Arab, Abbas Nowzari-Dalini
2021 J jnl
EIA-CNDP: An exact iterative algorithm for critical node detection problem.
Comput. Oper. Res.
Javad Rezaei, Fatemeh Zare-Mirakabad, Seyyed Ali MirHassani, Sayed-Amir Marashi
2020 J jnl
The assessment of histone acetylation marks in the vicinity of transcription factor binding sites in human CD4 + T cells using information theory methods.
Comput. Biol. Chem.
Nafiseh Banirazi Motlagh, Bahram Mohammadpour Esfahani, Behnoosh Ashrafi, Fatemeh Zare-Mirakabad
2019 J jnl
The assessment of efficient representation of drug features using deep learning for drug repositioning.
BMC Bioinform.
Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi, Fatemeh Zare-Mirakabad
2018 J jnl
Assessing the impact of exact reads on reducing the error rate of read mapping.
BMC Bioinform.
Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh
2017 J jnl
Evaluating the quality of SHAPE data simulated by
J. Bioinform. Comput. Biol.
Soheila Montaseri, Fatemeh Zare-Mirakabad, Mohammad Ganjtabesh
2017 J jnl
Robust Multiple Model adaptive control with fuzzy posterior Probability Combination.
Control. Intell. Syst.
Fatemeh Zare-Mirakabad, Mohammad Hosein Kazemi
2016 J jnl
Evaluating the accuracy of protein design using native secondary sub-structures.
BMC Bioinform.
Marziyeh Movahedi, Fatemeh Zare-Mirakabad, Seyed Shahriar Arab
2014 J jnl
RNA-RNA interaction prediction using genetic algorithm.
Algorithms Mol. Biol.
Soheila Montaseri, Fatemeh Zare-Mirakabad, Nasrollah Moghadam Charkari
2009 J jnl
A Constant Time Algorithm for DNA Add.
Int. J. Found. Comput. Sci.
Haydeh Ahrabian, Abbas Nowzari-Dalini, Fatemeh Zare-Mirakabad
2009 J jnl
New scoring schema for finding motifs in DNA Sequences.
BMC Bioinform.
Fatemeh Zare-Mirakabad, Hayedeh Ahrabian, Mehdi Sadeghi, Abbas Nowzari-Dalini, Bahram Goliaei