Farman Ali

21 papers Journal 21
YearRankTypeTitle / Venue / Authors
2026 J jnl
DeepPFT-GANCap: An explainable attention-based hybrid deep learning framework integrating protein language models and wavelet denoising-based evolutionary features for photosystem-II core protein prediction.
Ecol. Informatics
Wajdi Alghamdi, Farman Ali, Abdulmohsen Algarni, Omar Alghushairy, Majdi Khalid, Meng-Ze Du
2025 J jnl
Deep-CABPred: Deep learning model for predicting functional chlorophyll a-b binding proteins in trait-based plant ecology using hybrid embedding with semi-normalized temporal convolutional networks.
Ecol. Informatics
Farman Ali, Raed Alsini, Tamim Alkhalifah, Fahad Alturise, Wajdi Alghamdi, Majdi Khalid
2025 J jnl
Leveraging deep learning for epigenetic protein prediction: a novel approach for early lung cancer diagnosis and drug discovery.
Health Inf. Sci. Syst.
Farman Ali, Abdullah Almuhaimeed, Wajdi Alghamdi, Haya Aldossary, Othman Asiry, Atef Masmoudi
2024 J jnl
IP-GCN: A deep learning model for prediction of insulin using graph convolutional network for diabetes drug design.
J. Comput. Sci.
Farman Ali, Majdi Khalid, Abdullah Almuhaimeed, Atef Masmoudi, Wajdi Alghamdi, Ayman Yafoz
2024 J jnl
VEGF-ERCNN: A deep learning-based model for prediction of vascular endothelial growth factor using ensemble residual CNN.
J. Comput. Sci.
Farman Ali, Majdi Khalid, Atef Masmoudi, Wajdi Alghamdi, Ayman Yafoz, Raed Alsini
2023 J jnl
AFP-SPTS: An Accurate Prediction of Antifreeze Proteins Using Sequential and Pseudo-Tri-Slicing Evolutionary Features with an Extremely Randomized Tree.
J. Chem. Inf. Model.
Adnan Khan, Jamal Uddin, Farman Ali, Harish Kumar, Wajdi Alghamdi, Aftab Ahmad
2023 J jnl
Identifying Neuropeptides via Evolutionary and Sequential Based Multi-Perspective Descriptors by Incorporation With Ensemble Classification Strategy.
IEEE Access
Shahid Akbar, Heba G. Mohamed, Hashim Ali, Aamir Saeed, Aftab Ahmed Khan, Sarah Gul, Ashfaq Ahmad, Farman Ali, Yazeed Yasin Ghadi, Muhammad Assam
2023 J jnl
Prediction of Amyloid Proteins Using Embedded Evolutionary & Ensemble Feature Selection Based Descriptors With eXtreme Gradient Boosting Model.
IEEE Access
Shahid Akbar, Hashim Ali, Ashfaq Ahmad, Mahidur R. Sarker, Aamir Saeed, Ely Salwana, Sarah Gul, Ahmad Khan, Farman Ali
2022 J jnl
DBP-CNN: Deep learning-based prediction of DNA-binding proteins by coupling discrete cosine transform with two-dimensional convolutional neural network.
Expert Syst. Appl.
Omar Barukab, Farman Ali, Wajdi Alghamdi, Yoosef Bassam, Sher Afzal Khan
2022 J jnl
Deep-GHBP: Improving prediction of Growth Hormone-binding proteins using deep learning model.
Biomed. Signal Process. Control.
Farman Ali, Harish Kumar, Shruti Patil, Ashfaq Ahmad, Amal Babour, Ali Daud
2022 J jnl
Target-DBPPred: An intelligent model for prediction of DNA-binding proteins using discrete wavelet transform based compression and light eXtreme gradient boosting.
Comput. Biol. Medicine
Farman Ali, Harish Kumar, Shruti Patil, Ketan Kotecha, Ameen Banjar, Ali Daud
2021 J jnl
A privacy-conserving framework based intrusion detection method for detecting and recognizing malicious behaviours in cyber-physical power networks.
Appl. Intell.
Izhar Ahmed Khan, Dechang Pi, Nasrullah Khan, Zaheer Ullah Khan, Yasir Hussain, Asif Nawaz, Farman Ali
2021 J jnl
AFP-CMBPred: Computational identification of antifreeze proteins by extending consensus sequences into multi-blocks evolutionary information.
Comput. Biol. Medicine
Farman Ali, Shahid Akbar, Ali Ghulam, Zulfikar Ahmed Maher, Ahsanullah Unar, Dhani Bux Talpur
2021 J jnl
DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning.
J. Bioinform. Comput. Biol.
Omar Barukab, Farman Ali, Sher Afzal Khan
2021 J jnl
iAtbP-Hyb-EnC: Prediction of antitubercular peptides via heterogeneous feature representation and genetic algorithm based ensemble learning model.
Comput. Biol. Medicine
Shahid Akbar, Ashfaq Ahmad, Maqsood Hayat, Ateeq Ur Rehman, Salman Khan, Farman Ali
2021 J jnl
piEnPred: a bi-layered discriminative model for enhancers and their subtypes via novel cascade multi-level subset feature selection algorithm.
Frontiers Comput. Sci.
Zaheer Ullah Khan, Dechang Pi, Shuanglong Yao, Asif Nawaz, Farman Ali, Shaukat Ali
2020 J jnl
TargetCPP: accurate prediction of cell-penetrating peptides from optimized multi-scale features using gradient boost decision tree.
J. Comput. Aided Mol. Des.
Muhammad Arif, Saeed Ahmad, Farman Ali, Ge Fang, Min Li, Dong-Jun Yu
2019 J jnl
Brain tumor classification for MR images using transfer learning and fine-tuning.
Comput. Medical Imaging Graph.
Zar Nawab Khan Swati, Qinghua Zhao, Muhammad Kabir, Farman Ali, Zakir Ali, Saeed Ahmed, Jianfeng Lu
2019 J jnl
Content-Based Brain Tumor Retrieval for MR Images Using Transfer Learning.
IEEE Access
Zar Nawab Khan Swati, Qinghua Zhao, Muhammad Kabir, Farman Ali, Zakir Ali, Saeed Ahmed, Jianfeng Lu
2019 J jnl
DP-BINDER: machine learning model for prediction of DNA-binding proteins by fusing evolutionary and physicochemical information.
J. Comput. Aided Mol. Des.
Farman Ali, Saeed Ahmed, Zar Nawab Khan Swati, Shahid Akbar
2018 J jnl
Improving secretory proteins prediction in Mycobacterium tuberculosis using the unbiased dipeptide composition with support vector machine.
Int. J. Data Min. Bioinform.
Saeed Ahmed, Muhammad Kabir, Muhammad Arif, Zakir Ali, Farman Ali, Zar Nawab Khan Swati