Farhad Hormozdiari

37 papers B 7Journal 22Unranked 7
YearRankTypeTitle / Venue / Authors
2024 J jnl
Advancing Multimodal Medical Capabilities of Gemini.
CoRR
Lin Yang, Shawn Xu, Andrew Sellergren, Timo Kohlberger, Yuchen Zhou, Ira Ktena, Atilla P. Kiraly, Faruk Ahmed, Farhad Hormozdiari, Tiam Jaroensri, Eric Wang, Ellery Wulczyn, Fayaz Jamil, Theo Guidroz, Chuck Lau, Siyuan Qiao, Yun Liu, Akshay Goel, Kendall Park, Arnav Agharwal, Nick George, Yang Wang, Ryutaro Tanno, David G. T. Barrett, Wei-Hung Weng, S. Sara Mahdavi, Khaled Saab, Tao Tu, Sreenivasa Raju Kalidindi, Mozziyar Etemadi, Jorge Cuadros, Gregory Sorensen, Yossi Matias, Katherine Chou, Greg Corrado, Joelle K. Barral, Shravya Shetty, David J. Fleet, S. M. Ali Eslami, Daniel Tse, Shruthi Prabhakara, Cory Y. McLean, Dave Steiner, Rory Pilgrim, Christopher Kelly, Shekoofeh Azizi, Daniel Golden
2023 — conf
Multimodal LLMs for Health Grounded in Individual-Specific Data.
ML4MHD
Anastasiya Belyaeva, Justin Cosentino, Farhad Hormozdiari, Krish Eswaran, Shravya Shetty, Greg Corrado, Andrew Carroll, Cory Y. McLean, Nicholas A. Furlotte
2023 J jnl
Multimodal LLMs for health grounded in individual-specific data.
CoRR
Anastasiya Belyaeva, Justin Cosentino, Farhad Hormozdiari, Krish Eswaran, Shravya Shetty, Greg Corrado, Andrew Carroll, Cory Y. McLean, Nicholas A. Furlotte
2022 J jnl
Underspecification Presents Challenges for Credibility in Modern Machine Learning.
J. Mach. Learn. Res.
Alexander D'Amour, Katherine A. Heller, Dan Moldovan, Ben Adlam, Babak Alipanahi, Alex Beutel, Christina Chen, Jonathan Deaton, Jacob Eisenstein, Matthew D. Hoffman, Farhad Hormozdiari, Neil Houlsby, Shaobo Hou, Ghassen Jerfel, Alan Karthikesalingam, Mario Lucic, Yi-An Ma, Cory Y. McLean, Diana Mincu, Akinori Mitani, Andrea Montanari, Zachary Nado, Vivek Natarajan, Christopher Nielson, Thomas F. Osborne, Rajiv Raman, Kim Ramasamy, Rory Sayres, Jessica Schrouff, Martin Seneviratne, Shannon Sequeira, Harini Suresh, Victor Veitch, Max Vladymyrov, Xuezhi Wang, Kellie Webster, Steve Yadlowsky, Taedong Yun, Xiaohua Zhai, D. Sculley
2020 B conf
Identifying Causal Variants by Fine Mapping Across Multiple Studies.
RECOMB
Nathan LaPierre, Kodi Taraszka, Helen Huang, Rosemary He, Farhad Hormozdiari, Eleazar Eskin
2020 J jnl
Underspecification Presents Challenges for Credibility in Modern Machine Learning.
CoRR
Alexander D'Amour, Katherine A. Heller, Dan Moldovan, Ben Adlam, Babak Alipanahi, Alex Beutel, Christina Chen, Jonathan Deaton, Jacob Eisenstein, Matthew D. Hoffman, Farhad Hormozdiari, Neil Houlsby, Shaobo Hou, Ghassen Jerfel, Alan Karthikesalingam, Mario Lucic, Yi-An Ma, Cory Y. McLean, Diana Mincu, Akinori Mitani, Andrea Montanari, Zachary Nado, Vivek Natarajan, Christopher Nielson, Thomas F. Osborne, Rajiv Raman, Kim Ramasamy, Rory Sayres, Jessica Schrouff, Martin Seneviratne, Shannon Sequeira, Harini Suresh, Victor Veitch, Max Vladymyrov, Xuezhi Wang, Kellie Webster, Steve Yadlowsky, Taedong Yun, Xiaohua Zhai, D. Sculley
2019 J jnl
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies.
J. Comput. Biol.
Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin
2017 B conf
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies.
RECOMB
Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin
2017 J jnl
The impact of rare variation on gene expression across tissues.
Nat.
Xin Li, Yungil Kim, Emily K. Tsang, Joe R. Davis, Farhan N. Damani, Colby Chiang, Gaelen T. Hess, Zachary Zappala, Benjamin J. Strober, Alexandra J. Scott, Amy Li, Andrea Ganna, Michael C. Bassik, Jason D. Merker, François Aguet, Kristin G. Ardlie, Beryl B. Cummings, Ellen T. Gelfand, Gad Getz, Kane Hadley, Robert E. Handsaker, Katherine H. Huang, Seva Kashin, Konrad J. Karczewski, Monkol Lek, Xiao Li, Daniel G. MacArthur, Jared L. Nedzel, Duyen T. Nguyen, Michael S. Noble, Ayellet V. Segrè, Casandra A. Trowbridge, Taru Tukiainen, Nathan S. Abell, Brunilda Balliu, Ruth Barshir, Omer Basha, Alexis J. Battle, Gireesh K. Bogu, Andrew Brown, Christopher D. Brown, Stephane E. Castel, Lin S. Chen, Donald F. Conrad, Nancy J. Cox, Olivier Delaneau, Emmanouil T. Dermitzakis, Barbara E. Engelhardt, Eleazar Eskin, Pedro G. Ferreira, Laure Frésard, Eric R. Gamazon, Diego Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, Roderic Guigó, Ira M. Hall, Buhm Han, Yuan He, Farhad Hormozdiari, Cedric Howald, Hae Kyung Im, Brian Jo, Eun Yong Kang, Sarah Kim-Hellmuth, Tuuli Lappalainen, Gen Li, Boxiang Liu, Serghei Mangul, Mark I. McCarthy, Ian C. McDowell, Pejman Mohammadi, Jean Monlong, Stephen B. Montgomery
2016 — conf
HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads.
ISBRA
Serghei Mangul, Harry (Taegyun) Yang, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky, Eleazar Eskin
2016 — —
Statistical Methods to Understand the Genetic Architecture of Complex Traits.
Farhad Hormozdiari
2016 B conf
The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB).
RECOMB
Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin
2016 J jnl
Using genomic annotations increases statistical power to detect eGenes.
Bioinform.
Dat Duong, Jennifer Zou, Farhad Hormozdiari, Jae Hoon Sul, Jason Ernst, Buhm Han, Eleazar Eskin
2015 J jnl
A Spatial Haplotype Copying Model with Applications to Genotype Imputation.
J. Comput. Biol.
Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
2015 J jnl
Identification of causal genes for complex traits.
Bioinform.
Farhad Hormozdiari, Gleb Kichaev, Wen-Yun Yang, Bogdan Pasaniuc, Eleazar Eskin
2015 J jnl
Memory efficient assembly of human genome.
J. Bioinform. Comput. Biol.
Farhad Hormozdiari, Eleazar Eskin
2015 J jnl
PIGS: improved estimates of identity-by-descent probabilities by probabilistic IBD graph sampling.
BMC Bioinform.
Danny S. Park, Yael Baran, Farhad Hormozdiari, Celeste Eng, Dara G. Torgerson, Esteban Gonzàlez Burchard, Noah Zaitlen
2014 B conf
A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation.
RECOMB
Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
2014 — conf
Identifying causal variants at loci with multiple signals of association.
BCB
Farhad Hormozdiari, Emrah Kostem, Eun Yong Kang, Bogdan Pasaniuc, Eleazar Eskin
2014 J jnl
Privacy preserving protocol for detecting genetic relatives using rare variants.
Bioinform.
Farhad Hormozdiari, Jong Wha J. Joo, Akshay Wadia, Feng Guan, Rafail Ostrovsky, Amit Sahai, Eleazar Eskin
2014 J jnl
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.
Nucleic Acids Res.
Faraz Hach, Iman Sarrafi, Farhad Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2013 J jnl
Accelerating read mapping with FastHASH.
BMC Genom.
Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan
2013 J jnl
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping.
J. Comput. Biol.
Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
2013 J jnl
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Bioinform.
Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin
2013 — conf
Memory efficient assembly of human genome.
ICCABS
Farhad Hormozdiari, Eleazar Eskin
2013 B conf
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data.
RECOMB
Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin
2013 J jnl
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data.
J. Comput. Biol.
Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Christine F. Skibola, Eleazar Eskin, Eran Halperin
2012 B conf
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping.
RECOMB
Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
2012 — conf
Efficient genotyping of individuals using overlapping pool sequencing and imputation.
ACSCC
Farhad Hormozdiari, Zhanyong Wang, Wen-Yun Yang, Eleazar Eskin
2012 J jnl
Sensitive and fast mapping of di-base encoded reads.
Bioinform.
Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan
2011 J jnl
Assembly of non-unique insertion content using next-generation sequencing.
BMC Bioinform.
Nathaniel Parrish, Farhad Hormozdiari, Eleazar Eskin
2011 J jnl
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.
Bioinform.
Dan He, Farhad Hormozdiari, Nicholas A. Furlotte, Eleazar Eskin
2011 J jnl
Sensitive and fast mapping of di-base encoded reads.
Bioinform.
Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan
2010 J jnl
Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set.
J. Chem. Inf. Model.
Iurii Sushko, Sergii Novotarskyi, Robert Körner, Anil Kumar Pandey, Artem Cherkasov, Jiazhong Li, Paola Gramatica, Katja Hansen, Timon Schroeter, Klaus-Robert Müller, Lili Xi, Huanxiang Liu, Xiaojun Yao, Tomas Öberg, Farhad Hormozdiari, Phuong Dao, Süleyman Cenk Sahinalp, Roberto Todeschini, Pavel G. Polishchuk, Anatoly G. Artemenko, Victor Kuzmin, Todd M. Martin, Douglas M. Young, Denis Fourches, Eugene N. Muratov, Alexander Tropsha, Igor I. Baskin, Dragos Horvath, Gilles Marcou, Christophe Muller, Alexandre Varnek, Volodymyr V. Prokopenko, Igor V. Tetko
2008 — conf
Analysis of the Impact of Wavelength Converters on Contention Resolution in Optical Burst Switching.
Asia International Conference on Modelling and Simulation
Ali Rajabi, Aresh Dadlani, Farhad Hormozdiari, Ahmad Khonsari, Ahmad Kianrad, Hassan Seyed Razi
2007 — conf
Flows with Bounded Waiting Time in Networked and Distributed Systems.
Asia International Conference on Modelling and Simulation
Ali Rajabi, Farhad Hormozdiari, Ahmad Khonsari
2007 B conf
Mathematical Analysis of Delay Line to Wavelength Allocation Algorithmsin Optical Networks.
MASCOTS
Farhad Hormozdiari, Ali Rajabi, Ahmad Khonsari