Fang Ge

22 papers Journal 22
YearRankTypeTitle / Venue / Authors
2025 J jnl
Identification of Protein-Nucleotide Binding Residues With Deep Multi-Task and Multi-Scale Learning.
IEEE J. Biomed. Health Informatics
Jiashun Wu, Fang Ge, Shanruo Xu, Yan Liu, Jiangning Song, Dong-Jun Yu
2025 J jnl
MORE: a multi-omics data-driven hypergraph integration network for biomedical data classification and biomarker identification.
Briefings Bioinform.
Yuhan Wang, Zhikang Wang, Xuan Yu, Xiaoyu Wang, Jiangning Song, Dong-Jun Yu, Fang Ge
2025 J jnl
MutPNI: A Unified Model Architecture for Accurately Predicting the Effects of Mutations on Protein-Nucleic Acid Interactions.
J. Chem. Inf. Model.
Zihao Yan, Fang Ge, Ying Zhang, He Yan, Yan Liu, Yi-Heng Zhu, Jiangning Song, Dong-Jun Yu
2025 J jnl
Personalized Intelligent Recommendation Algorithm for Consumer Purchase Behavior.
Int. J. Inf. Technol. Syst. Approach
Fang Ge, Chen Zhang, Wenjing Huang
2025 J jnl
Structure-Directed Pan-Specific T-Cell Receptor-Peptide-Major Histocompatibility Complex Interaction Prediction.
J. Chem. Inf. Model.
Letao Gao, Yumeng Zhang, Fang Ge, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu
2025 J jnl
TransABseq: A Two-Stage Approach for Predicting Antigen-Antibody Binding Affinity Changes upon Mutation Based on Protein Sequences.
J. Chem. Inf. Model.
Cui-Feng Li, Zihao Yan, Fang Ge, Xuan Yu, Jing Zhang, Ming Zhang, Dong-Jun Yu
2024 J jnl
DeepBP: Ensemble deep learning strategy for bioactive peptide prediction.
BMC Bioinform.
Ming Zhang, Jianren Zhou, Xiaohua Wang, Xun Wang, Fang Ge
2024 J jnl
FCMSTrans: Accurate Prediction of Disease-Associated nsSNPs by Utilizing Multiscale Convolution and Deep Feature Combination within a Transformer Framework.
J. Chem. Inf. Model.
Ming Zhang, Chao Gong, Fang Ge, Dong-Jun Yu
2024 J jnl
GPTrans: A Biological Language Model-Based Approach for Predicting Disease-Associated Mutations in G Protein-Coupled Receptors.
J. Chem. Inf. Model.
Xiaohua Wang, Ming Zhang, Xibei Yang, Dong-Jun Yu, Fang Ge
2024 J jnl
MLSNet: a deep learning model for predicting transcription factor binding sites.
Briefings Bioinform.
Yuchuan Zhang, Zhikang Wang, Fang Ge, Xiaoyu Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu
2024 J jnl
MetalTrans: A Biological Language Model-Based Approach for Predicting Disease-Associated Mutations in Protein Metal-Binding Sites.
J. Chem. Inf. Model.
Ming Zhang, Xiaohua Wang, Shanruo Xu, Fang Ge, Ian Costa Paixao, Jiangning Song, Dong-Jun Yu
2024 J jnl
Prediction of protein-ATP binding residues using multi-view feature learning via contextual-based co-attention network.
Comput. Biol. Medicine
Jia-Shun Wu, Yan Liu, Fang Ge, Dong-Jun Yu
2024 J jnl
TransEFVP: A Two-Stage Approach for the Prediction of Human Pathogenic Variants Based on Protein Sequence Embedding Fusion.
J. Chem. Inf. Model.
Zihao Yan, Fang Ge, Yan Liu, Yumeng Zhang, Fuyi Li, Jiangning Song, Dong-Jun Yu
2023 J jnl
MMPatho: Leveraging Multilevel Consensus and Evolutionary Information for Enhanced Missense Mutation Pathogenic Prediction.
J. Chem. Inf. Model.
Fang Ge, Muhammad Arif, Zihao Yan, Hanin H. Alahmadi, Apilak Worachartcheewan, Dong-Jun Yu, Watshara Shoombuatong
2023 J jnl
Prediction of Multiple Types of RNA Modifications via Biological Language Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ying Zhang, Fang Ge, Fuyi Li, Xibei Yang, Jiangning Song, Dong-Jun Yu
2023 J jnl
VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants.
Briefings Bioinform.
Fang Ge, Chen Li, Shahid Iqbal, Muhammad Arif, Fuyi Li, Maha A. Thafar, Zihao Yan, Apilak Worachartcheewan, Xiaofeng Xu, Jiangning Song, Dong-Jun Yu
2022 J jnl
DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake Efficiencies.
IEEE ACM Trans. Comput. Biol. Bioinform.
Muhammad Arif, Muhammad Kabir, Saeed Ahmed, Abid Khan, Fang Ge, Adel Khelifi, Dong-Jun Yu
2022 J jnl
PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations.
J. Chem. Inf. Model.
Shahid Iqbal, Fang Ge, Fuyi Li, Tatsuya Akutsu, Yuanting Zheng, Robin B. Gasser, Dong-Jun Yu, Geoffrey I. Webb, Jiangning Song
2022 J jnl
Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion.
Briefings Bioinform.
Fang Ge, Ying Zhang, Jian Xu, Muhammad Arif, Jiangning Song, Dong-Jun Yu
2022 J jnl
csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames.
Briefings Bioinform.
Meng Zhang, Jian Zhao, Chen Li, Fang Ge, Jing Wu, Bin Jiang, Jiangning Song, Xiaofeng Song
2021 J jnl
Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features.
Briefings Bioinform.
Yi-Heng Zhu, Jun Hu, Fang Ge, Fuyi Li, Jiangning Song, Yang Zhang, Dong-Jun Yu
2020 J jnl
SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.
J. Chem. Inf. Model.
Ming-Cai Chen, Yang Li, Yi-Heng Zhu, Fang Ge, Dong-Jun Yu