Fan Yang

22 papers A* 3Journal 11Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
Opportunistic Osteoporosis Diagnosis via Texture-Preserving Self-Supervision, Mixture of Experts and Multi-Task Integration.
CoRR
Jiaxing Huang, Heng Guo, Le Lu, Fan Yang, Minfeng Xu, Ge Yang, Wei Luo
2025 — conf
Opportunistic Osteoporosis Diagnosis via Texture-Preserving Self-supervision, Mixture of Experts and Multi-task Integration.
MICCAI (15)
Jiaxing Huang, Heng Guo, Le Lu, Fan Yang, Minfeng Xu, Ge Yang, Wei Luo
2024 J jnl
Current opinions on large cellular models.
Quant. Biol.
Minsheng Hao, Lei Wei, Fan Yang, Jianhua Yao, Christina V. Theodoris, Bo Wang, Xin Li, Ge Yang, Xuegong Zhang
2024 J jnl
Reply to: Deeper evaluation of a single-cell foundation model.
Nat. Mac. Intell.
Fan Yang, Fang Wang, Longkai Huang, Linjing Liu, Junzhou Huang, Jianhua Yao
2023 J jnl
Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling.
Nat. Mac. Intell.
Fang Wang, Fan Yang, Longkai Huang, Wei Li, Jiangning Song, Robin B. Gasser, Ruedi Aebersold, Guohua Wang, Jianhua Yao
2023 J jnl
Interpretable artificial intelligence model for accurate identification of medical conditions using immune repertoire.
Briefings Bioinform.
Yu Zhao, Bing He, Zhimeng Xu, Yidan Zhang, Xuan Zhao, Zhi-An Huang, Fan Yang, Liang Wang, Lei Duan, Jiangning Song, Jianhua Yao
2023 J jnl
Reweighted Mixup for Subpopulation Shift.
CoRR
Zongbo Han, Zhipeng Liang, Fan Yang, Liu Liu, Lanqing Li, Yatao Bian, Peilin Zhao, Qinghua Hu, Bingzhe Wu, Changqing Zhang, Jianhua Yao
2023 J jnl
scMHNN: a novel hypergraph neural network for integrative analysis of single-cell epigenomic, transcriptomic and proteomic data.
Briefings Bioinform.
Wei Li, Bin Xiang, Fan Yang, Yu Rong, Yanbin Yin, Jianhua Yao, Han Zhang
2022 — conf
Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data.
BIBM
Jiawei Li, Fan Yang, Fang Wang, Yu Rong, Peilin Zhao, Shizhan Chen, Jianhua Yao, Jijun Tang, Fei Guo
2022 J jnl
Multi-level attention graph neural network based on co-expression gene modules for disease diagnosis and prognosis.
Bioinform.
Xiaohan Xing, Fan Yang, Hang Li, Jun Zhang, Yu Zhao, Mingxuan Gao, Junzhou Huang, Jianhua Yao
2022 A* conf
Multimodal Dynamics: Dynamical Fusion for Trustworthy Multimodal Classification.
CVPR
Zongbo Han, Fan Yang, Junzhou Huang, Changqing Zhang, Jianhua Yao
2022 — conf
ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification.
MICCAI (2)
Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao
2022 J jnl
ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification.
CoRR
Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao
2022 A* conf
UMIX: Improving Importance Weighting for Subpopulation Shift via Uncertainty-Aware Mixup.
NeurIPS
Zongbo Han, Zhipeng Liang, Fan Yang, Liu Liu, Lanqing Li, Yatao Bian, Peilin Zhao, Bingzhe Wu, Changqing Zhang, Jianhua Yao
2022 J jnl
UMIX: Improving Importance Weighting for Subpopulation Shift via Uncertainty-Aware Mixup.
CoRR
Zongbo Han, Zhipeng Liang, Fan Yang, Liu Liu, Lanqing Li, Yatao Bian, Peilin Zhao, Bingzhe Wu, Changqing Zhang, Jianhua Yao
2022 J jnl
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data.
Nat. Mac. Intell.
Fan Yang, Wenchuan Wang, Fang Wang, Yuan Fang, Duyu Tang, Junzhou Huang, Hui Lu, Jianhua Yao
2021 — conf
An Interpretable Multi-Level Enhanced Graph Attention Network for Disease Diagnosis with Gene Expression Data.
BIBM
Xiaohan Xing, Fan Yang, Hang Li, Jun Zhang, Yu Zhao, Mingxuan Gao, Junzhou Huang, Jianhua Yao
2021 — conf
DT-MIL: Deformable Transformer for Multi-instance Learning on Histopathological Image.
MICCAI (8)
Hang Li, Fan Yang, Yu Zhao, Xiaohan Xing, Jun Zhang, Mingxuan Gao, Junzhou Huang, Liansheng Wang, Jianhua Yao
2021 — conf
Mining the Associations between V(D)J Gene Segments and COVID-19 Disease Characteristics.
BIBM
Yu Zhao, Yidan Zhang, Zhi-An Huang, Fan Yang, Lei Duan, Jianhua Yao
2021 — conf
Multi-modal Multi-instance Learning Using Weakly Correlated Histopathological Images and Tabular Clinical Information.
MICCAI (8)
Hang Li, Fan Yang, Xiaohan Xing, Yu Zhao, Jun Zhang, Yueping Liu, Mengxue Han, Junzhou Huang, Liansheng Wang, Jianhua Yao
2020 — conf
Microsatellite Instability Prediction of Uterine Corpus Endometrial Carcinoma Based on H&E Histology Whole-Slide Imaging.
ISBI
Tongxin Wang, Weijia Lu, Fan Yang, Li Liu, Zhongyi Dong, Weimin Tang, Jia Chang, Wenjing Huan, Kun Huang, Jianhua Yao
2020 A* conf
Predicting Lymph Node Metastasis Using Histopathological Images Based on Multiple Instance Learning With Deep Graph Convolution.
CVPR
Yu Zhao, Fan Yang, Yuqi Fang, Hailing Liu, Niyun Zhou, Jun Zhang, Jiarui Sun, Sen Yang, Bjoern H. Menze, Xinjuan Fan, Jianhua Yao