Falk Schreiber

180 papers A 13B 4C 4Misc 3Journal 108Unranked 37
YearRankTypeTitle / Venue / Authors
2026 J jnl
Design Space and Implementation of RAG-Based Avatars for Virtual Archaeology.
CoRR
Wilhelm Kerle-Malcharek, Giulio Biondi, Karsten Klein, Ulf Hailer, Steffen Diefenbach, Fabrizio Grosso, Marco Legittimo, Paola Venuti, Carla Binucci, Giuseppe Liotta, Falk Schreiber
2025 J jnl
De-Emphasise, Aggregate, and Hide: A Study of Interactive Visual Transformations for Group Structures in Network Visualisations.
IEEE Trans. Vis. Comput. Graph.
Michael Aichem, Karsten Klein, Stephen G. Kobourov, Falk Schreiber
2025 A conf
Edge Bundling as a Multi-Objective Optimization Problem (Poster Abstract).
GD
Raissa dos Santos Vieira, Hugo A. D. do Nascimento, Joelma de Moura Ferreira, Les R. Foulds, Karsten Klein, Falk Schreiber
2025 J jnl
GraphTrials: Visual Proofs of Graph Properties.
IEEE Trans. Vis. Comput. Graph.
Henry Förster, Felix Klesen, Tim Dwyer, Peter Eades, Seok-Hee Hong, Stephen G. Kobourov, Giuseppe Liotta, Kazuo Misue, Fabrizio Montecchiani, Alexander Pastukhov, Falk Schreiber
2025 J jnl
Interweaving Mathematics and Art: Drawing Graphs as Celtic Knots and Links With CelticGraph.
IEEE Trans. Vis. Comput. Graph.
Niklas Gröne, Peter Eades, Karsten Klein, Patrick Eades, Leo Schreiber, Ulf Hailer, Hugo A. D. do Nascimento, Falk Schreiber
2025 A conf
Investigating Crossing Perception in 3D Graph Visualisation (Poster Abstract).
GD
Ying Zhang, Niklas Gröne, Giuseppe Liotta, Falk Schreiber, Karsten Klein
2025 J jnl
Investigating Crossing Perception in 3D Graph Visualisation.
CoRR
Ying Zhang, Niklas Gröne, Karsten Klein, Giuseppe Liotta, Falk Schreiber
2025 J jnl
Resource efficient data transmission on animals based on machine learning.
CoRR
Wilhelm Kerle-Malcharek, Karsten Klein, Martin Wikelski, Falk Schreiber, Timm A. Wild
2025 A conf
Show Me Your Best Side: Characteristics of User-Preferred Perspectives for 3D Graph Drawings.
GD
Lucas Joos, Gavin J. Mooney, Maximilian T. Fischer, Daniel A. Keim, Falk Schreiber, Helen C. Purchase, Karsten Klein
2025 J jnl
Show Me Your Best Side: Characteristics of User-Preferred Perspectives for 3D Graph Drawings.
CoRR
Lucas Joos, Gavin J. Mooney, Maximilian T. Fischer, Daniel A. Keim, Falk Schreiber, Helen C. Purchase, Karsten Klein
2025 J jnl
Sustainable software development in science - insights from 20 years of Vanted.
J. Integr. Bioinform.
Falk Schreiber, Tobias Czauderna, Dimitar Garkov, Niklas Gröne, Karsten Klein, Matthias Lange, Uwe Scholz, Björn Sommer
2025 J jnl
The Junction of Immersive Analytics and Virtual Reconstructions - A Case Study on the Mausoleum of Emperor Maxentius.
CoRR
Wilhelm Kerle-Malcharek, Niklas Hann-von-Weyhern, Ulf Hailer, Steffen Diefenbach, Stefan P. Feyer, Karsten Klein, Falk Schreiber
2025 A conf
Towards a Better Understanding of Graph Perception in Immersive Environments.
GD
Lin Zhang, Yao Wang, Ying Zhang, Wilhelm Kerle-Malcharek, Karsten Klein, Falk Schreiber, Andreas Bulling
2025 J jnl
Visual Network Analysis in Immersive Environments: A Survey.
CoRR
Lucas Joos, Maximilian T. Fischer, Julius Rauscher, Daniel A. Keim, Tim Dwyer, Falk Schreiber, Karsten Klein
2024 J jnl
2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualisations in Virtual Reality.
IEEE Trans. Vis. Comput. Graph.
Stefan P. Feyer, Bruno Pinaud, Stephen G. Kobourov, Nicolas Brich, Michael Krone, Andreas Kerren, Michael Behrisch, Falk Schreiber, Karsten Klein
2024 J jnl
Collaborative Problem Solving in Mixed Reality: A Study on Visual Graph Analysis.
CoRR
Dimitar Garkov, Tommaso Piselli, Emilio Di Giacomo, Karsten Klein, Giuseppe Liotta, Fabrizio Montecchiani, Falk Schreiber
2024 J jnl
Coracle - a machine learning framework to identify bacteria associated with continuous variables.
Bioinform.
Sebastian Staab, Anny Cardénas, Raquel Silva Peixoto, Falk Schreiber, Christian R. Voolstra
2024 J jnl
Exploring animal behaviour multilayer networks in immersive environments - a conceptual framework.
J. Integr. Bioinform.
Stefan Paul Feyer, Bruno Pinaud, Karsten Klein, Etienne Lein, Falk Schreiber
2024 A conf
GraphTrials: Visual Proofs of Graph Properties.
GD
Henry Förster, Felix Klesen, Tim Dwyer, Peter Eades, Seok-Hee Hong, Stephen G. Kobourov, Giuseppe Liotta, Kazuo Misue, Fabrizio Montecchiani, Alexander Pastukhov, Falk Schreiber
2024 J jnl
GraphTrials: Visual Proofs of Graph Properties.
CoRR
Henry Förster, Felix Klesen, Tim Dwyer, Peter Eades, Seok-Hee Hong, Stephen G. Kobourov, Giuseppe Liotta, Kazuo Misue, Fabrizio Montecchiani, Alexander Pastukhov, Falk Schreiber
2024 A conf
Immersive Analytics of Graphs in Virtual Reality with GAV-VR (Software Abstract).
GD
Stefan P. Feyer, Wilhelm Kerle-Malcharek, Ying Zhang, Falk Schreiber, Karsten Klein
2024 J jnl
Layout of anatomical structures and blood vessels based on the foundational model of anatomy.
J. Integr. Bioinform.
Niklas Gröne, Benjamin Grüneisen, Karsten Klein, Bernard de Bono, Tobias Czauderna, Falk Schreiber
2024 J jnl
PathwayNexus: a tool for interactive metabolic data analysis.
Bioinform.
Philipp Eberhard, Martin Kern, Michael Aichem, Hanna Borlinghaus, Karsten Klein, Johannes Delp, Ilinca Suciu, Benjamin Moser, Daniel Dietrich, Marcel Leist, Falk Schreiber
2024 J jnl
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.
J. Integr. Bioinform.
Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
2024 J jnl
Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data.
J. Cheminformatics
Sabrina Jaeger-Honz, Karsten Klein, Falk Schreiber
2024 J jnl
TIBA: A web application for the visual analysis of temporal occurrences, interactions, and transitions of animal behavior.
PLoS Comput. Biol.
Nicolai Kraus, Michael Aichem, Karsten Klein, Etienne Lein, Alex Jordan, Falk Schreiber
2024 — conf
Visualising the Invisible: Exploring Approaches for Visual Analysis of Dynamic Airflow in Geographic Environments Using Sensor Data.
EuroVA@EuroVis
Ying Zhang, Hannah Williams, Falk Schreiber, Karsten Klein
2024 J jnl
Wooly Graphs : A Mathematical Framework For Knitting.
CoRR
Kathryn Gray, Brian Bell, Diana Sieper, Stephen G. Kobourov, Falk Schreiber, Karsten Klein, Seokhee Hong
2023 J jnl
2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualisations in Virtual Reality.
CoRR
Stefan P. Feyer, Bruno Pinaud, Stephen G. Kobourov, Nicolas Brich, Michael Krone, Andreas Kerren, Michael Behrisch, Falk Schreiber, Karsten Klein
2023 J jnl
APL@voro - interactive visualization and analysis of cell membrane simulations.
Bioinform.
Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer
2023 J jnl
Beyond the horizon: immersive developments for animal ecology research.
Vis. Comput. Ind. Biomed. Art
Ying Zhang, Karsten Klein, Falk Schreiber, Kamran Safi
2023 — conf
CelticGraph: Drawing Graphs as Celtic Knots and Links.
GD (1)
Peter Eades, Niklas Gröne, Karsten Klein, Patrick Eades, Leo Schreiber, Ulf Hailer, Falk Schreiber
2023 J jnl
CelticGraph: Drawing Graphs as Celtic Knots and Links.
CoRR
Peter Eades, Niklas Gröne, Karsten Klein, Patrick Eades, Leo Schreiber, Ulf Hailer, Falk Schreiber
2023 — conf
GAV-VR: An Extensible Framework for Graph Analysis and Visualisation in Virtual Reality.
ICAT-EGVE
Wilhelm Kerle-Malcharek, Stefan Paul Feyer, Falk Schreiber, Karsten Klein
2023 J jnl
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
J. Integr. Bioinform.
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
2022 J jnl
Addressing
Briefings Bioinform.
Anna Niarakis, Dagmar Waltemath, James A. Glazier, Falk Schreiber, Sarah M. Keating, David P. Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomás Helikar, Sylvain Soliman, Laurence Calzone
2022 J jnl
Design considerations for representing systems biology information with the Systems Biology Graphical Notation.
J. Integr. Bioinform.
Falk Schreiber, Tobias Czauderna
2022 J jnl
Immersive Analytics with Abstract 3D Visualizations: A Survey.
Comput. Graph. Forum
Matthias Kraus, Johannes Fuchs, Björn Sommer, Karsten Klein, Ulrich Engelke, Daniel A. Keim, Falk Schreiber
2022 J jnl
Immersive analytics: An overview.
it Inf. Technol.
Karsten Klein, Michael Sedlmair, Falk Schreiber
2022 J jnl
Quantitative visual computing.
it Inf. Technol.
Falk Schreiber, Daniel Weiskopf
2022 — conf
Research Data Curation in Visualization : Position Paper.
BELIV
Dimitar Garkov, Christoph Müller, Matthias Braun, Daniel Weiskopf, Falk Schreiber
2022 J jnl
Spatially resolved transcriptomics in immersive environments.
Vis. Comput. Ind. Biomed. Art
Denis Bienroth, Hieu T. Nim, Dimitar Garkov, Karsten Klein, Sabrina Jaeger-Honz, Mirana Ramialison, Falk Schreiber
2022 J jnl
Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality.
J. Integr. Bioinform.
Michael Aichem, Karsten Klein, Tobias Czauderna, Dimitar Garkov, Jinxin Zhao, Jian Li, Falk Schreiber
2022 J jnl
Visual Comparison of Networks in VR.
IEEE Trans. Vis. Comput. Graph.
Lucas Joos, Sabrina Jaeger-Honz, Falk Schreiber, Daniel A. Keim, Karsten Klein
2021 J jnl
Corrigendum to: QSDB - a graphical Quorum Sensing Database.
Database J. Biol. Databases Curation
Karsten Klein, Dimitar Garkov, Sina Rütschlin, Thomas Böttcher, Falk Schreiber
2021 J jnl
QSDB - a graphical Quorum Sensing Database.
Database J. Biol. Databases Curation
Karsten Klein, Dimitar Garkov, Sina Rütschlin, Thomas Böttcher, Falk Schreiber
2021 J jnl
Specifications of standards in systems and synthetic biology: status and developments in 2021.
J. Integr. Bioinform.
Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2021 J jnl
TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour.
J. Vis.
Karsten Klein, Michael Aichem, Ying Zhang, Stefan Erk, Björn Sommer, Falk Schreiber
2021 J jnl
The Value of Immersive Visualization.
IEEE Computer Graphics and Applications
Matthias Kraus, Karsten Klein, Johannes Fuchs, Daniel A. Keim, Falk Schreiber, Michael Sedlmair, Theresa-Marie Rhyne
2021 J jnl
Visual analytics of sensor movement data for cheetah behaviour analysis.
J. Vis.
Karsten Klein, Sabrina Jaeger, Jörg Melzheimer, Bettina Wachter, Heribert Hofer, Artur Baltabayev, Falk Schreiber
2021 J jnl
Visual exploration of large metabolic models.
Bioinform.
Michael Aichem, Tobias Czauderna, Yan Zhu, Jinxin Zhao, Matthias Klapperstück, Karsten Klein, Jian Li, Falk Schreiber
2020 B conf
A Study of Mental Maps in Immersive Network Visualization.
PacificVis
Joseph Kotlarek, Oh-Hyun Kwon, Kwan-Liu Ma, Peter Eades, Andreas Kerren, Karsten Klein, Falk Schreiber
2020 J jnl
A Study of Mental Maps in Immersive Network Visualization.
CoRR
Joseph Kotlarek, Oh-Hyun Kwon, Kwan-Liu Ma, Peter Eades, Andreas Kerren, Karsten Klein, Falk Schreiber
2020 J jnl
Specifications of standards in systems and synthetic biology: status and developments in 2020.
J. Integr. Bioinform.
Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
2020 J jnl
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
J. Integr. Bioinform.
Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
2019 — ch.
10 Reasons to Get Interested in Graph Drawing.
Computing and Software Science
Carla Binucci, Ulrik Brandes, Tim Dwyer, Martin Gronemann, Reinhard von Hanxleden, Marc J. van Kreveld, Petra Mutzel, Marcus Schaefer, Falk Schreiber, Bettina Speckmann
2019 — conf
BinocularsVR - A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS".
ERVR
Bjorn Sommer, Stefan P. Feyer, Daniel Klinkhammer, Karsten Klein, Jonathan Wieland, Daniel Fink, Wolfgang Fiedler, Andrea Flack, Máté Nagy, Martin Wikelski, Harald Reiterer, Falk Schreiber
2019 B conf
Challenges for Brain Data Analysis in VR Environments.
PacificVis
Sabrina Jaeger, Karsten Klein, Lucas Joos, Johannes Zagermann, Michael de Ridder, Jinman Kim, Jean Yee Hwa Yang, Ulrike Pfeil, Harald Reiterer, Falk Schreiber
2019 J jnl
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.
J. Integr. Bioinform.
Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer
2019 J jnl
Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.
J. Integr. Bioinform.
Dimitar Garkov, Karsten Klein, Christian Klukas, Falk Schreiber
2019 J jnl
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integr. Bioinform.
Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
2019 J jnl
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform.
Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna
2019 C conf
TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data.
VINCI
Karsten Klein, Michael Aichem, Björn Sommer, Stefan Erk, Ying Zhang, Falk Schreiber
2019 — conf
Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation.
SD&A
Björn Sommer, Alexandra Diehl, Michael Aichem, Philipp Meschenmoser, Kim Rehberg, David Weber, Ying Zhang, Karsten Klein, Daniel A. Keim, Falk Schreiber
2019 C conf
Visual Analytics for Cheetah Behaviour Analysis.
VINCI
Karsten Klein, Sabrina Jaeger, Jörg Melzheimer, Bettina Wachter, Heribert Hofer, Artur Baltabayev, Falk Schreiber
2018 C conf
3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender.
VINCI
Mehmood Ghaffar, Niklas Biere, Daniel Jäger, Karsten Klein, Falk Schreiber, Olaf Kruse, Björn Sommer
2018 J jnl
Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility.
CoRR
Yunlong Wang, Björn Sommer, Falk Schreiber, Harald Reiterer
2018 — conf
Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction.
UMAP (Adjunct Publication)
Yunlong Wang, Corinna Breitinger, Björn Sommer, Falk Schreiber, Harald Reiterer
2018 J jnl
ContextuWall: Multi-site collaboration using display walls.
J. Vis. Lang. Comput.
Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott
2018 J jnl
Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell.
J. Integr. Bioinform.
Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer
2018 — book
Immersive Analytics
Kim Marriott, Falk Schreiber, Tim Dwyer, Karsten Klein, Nathalie Henry Riche, Takayuki Itoh, Wolfgang Stuerzlinger, Bruce H. Thomas
2018 — conf
Immersive Analytics - Methodology and Applications in the Life Sciences.
VISIGRAPP
Falk Schreiber
2018 — ch.
Immersive Analytics Applications in Life and Health Sciences.
Immersive Analytics
Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber
2018 — ch.
Immersive Analytics: An Introduction.
Immersive Analytics
Tim Dwyer, Kim Marriott, Tobias Isenberg, Karsten Klein, Nathalie Henry Riche, Falk Schreiber, Wolfgang Stuerzlinger, Bruce H. Thomas
2018 J jnl
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integr. Bioinform.
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2018 — conf
Virtual Reality for Sensor Data Visualization and Analysis.
ERVR
Artur Baltabayev, Alexej Gluschkow, Johannes Blank, Gero Birkhölzer, Jean Büsche, Martin Kern, Fabian Klopfer, Lisa-Maria Mayer, Gabriel Scheibler, Karsten Klein, Falk Schreiber, Björn Sommer
2017 — conf
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz.
SD&A
Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber
2017 Misc conf
A brief history of COMBINE.
WSC
Chris J. Myers, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, David P. Nickerson, Falk Schreiber, Dagmar Waltemath
2017 — conf
Analyse und Aufzeigen von Zusammenhängen.
GI-Jahrestagung
Falk Schreiber
2017 J jnl
Computational miRNomics - Integrative Approaches.
J. Integr. Bioinform.
Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
2017 — conf
Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors.
VCBM
Hieu T. Nim, Björn Sommer, Karsten Klein, Andrea Flack, Kamran Safi, Máté Nagy, Wolfgang Fiedler, Martin Wikelski, Falk Schreiber
2017 J jnl
Integration and virtual reality exploration of biomedical data with CmPI and VANTED.
it Inf. Technol.
Björn Sommer, Falk Schreiber
2017 — conf
MDS-based Visual Survey of Biological Data Visualization Techniques.
EuroVis (Posters)
Andreas Kerren, Kostiantyn Kucher, Yuan-Fang Li, Falk Schreiber
2016 — conf
Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation.
BDVA
Hieu T. Nim, Mengyang Wang, Yujie Zhu, Björn Sommer, Falk Schreiber, Sarah E. Boyd, Stephen Jia Wang
2016 — conf
ContextuWall: Peer Collaboration Using (Large) Displays.
BDVA
Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott
2016 J jnl
Immersive Analytics: A new multidisciplinary initiative to explore future interaction technologies for data analytics (NII Shonan Meeting 2016-2).
NII Shonan Meet. Rep.
Takayuki Itoh, Kim Marriott, Falk Schreiber, Uwe Wössner
2016 — ch.
Introduction.
Modeling in Systems Biology, The Petri Net Approach
Ina Koch, Falk Schreiber
2016 J jnl
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integr. Bioinform.
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2016 — conf
Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments.
SD&A
Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber
2016 J jnl
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng.
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
2015 J jnl
A unified framework for estimating parameters of kinetic biological models.
BMC Bioinform.
Syed Murtuza Baker, C. Hart Poskar, Falk Schreiber, Björn H. Junker
2015 — conf
Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques.
BDVA
Björn Sommer, Stephen Jia Wang, Lifeng Xu, Ming Chen, Falk Schreiber
2015 — conf
Immersive Analytics.
BDVA
Tom Chandler, Maxime Cordeil, Tobias Czauderna, Tim Dwyer, Jaroslaw Glowacki, Cagatay Goncu, Matthias Klapperstück, Karsten Klein, Kim Marriott, Falk Schreiber, Elliott Wilson
2015 — conf
Interactive Geolocational and Coral Compositional Visualisation of Great Barrier Reef Heat Stress Data.
BDVA
Hieu T. Nim, Terence Done, Falk Schreiber, Sarah E. Boyd
2015 J jnl
Specifications of Standards in Systems and Synthetic Biology.
J. Integr. Bioinform.
Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise
2015 J jnl
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integr. Bioinform.
Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger
2015 J jnl
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integr. Bioinform.
Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger
2014 J jnl
BioNetLink - An Architecture for Working with Network Data.
J. Integr. Bioinform.
Matthias Klapperstück, Falk Schreiber
2014 — ch.
Network Visualization for Integrative Bioinformatics.
Approaches in Integrative Bioinformatics
Andreas Kerren, Falk Schreiber
2014 J jnl
Petri Nets in the Biosciences.
it Inf. Technol.
Ina Koch, Wolfgang Reisig, Falk Schreiber
2014 J jnl
Why Integrate InfoVis and SciVis?: An Example from Systems Biology.
IEEE Computer Graphics and Applications
Andreas Kerren, Falk Schreiber
2013 J jnl
An improved constraint filtering technique for inferring hidden states and parameters of a biological model.
Bioinform.
Syed Murtuza Baker, C. Hart Poskar, Falk Schreiber, Björn H. Junker
2013 — ch.
Biological Networks.
Handbook of Graph Drawing and Visualization
Christian Bachmaier, Ulrik Brandes, Falk Schreiber
2013 J jnl
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
BMC Bioinform.
Tobias Czauderna, Michael Wybrow, Kim Marriott, Falk Schreiber
2013 J jnl
Editorial.
J. Integr. Bioinform.
Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise
2013 J jnl
Exploring biological data: Mappings between ontology- and cluster-based representations.
Inf. Vis.
Ilir Jusufi, Andreas Kerren, Falk Schreiber
2013 — conf
Heterogeneous Networks on Multiple Levels.
Multivariate Network Visualization
Falk Schreiber, Andreas Kerren, Katy Börner, Hans Hagen, Dirk Zeckzer
2013 — conf
Multivariate Networks in the Life Sciences.
Multivariate Network Visualization
Oliver Kohlbacher, Falk Schreiber, Matthew O. Ward
2013 — conf
OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences.
GI-Jahrestagung
Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Matthias Lange, Martin Mascher, Stephan Weise, Uwe Scholz, Falk Schreiber
2013 J jnl
Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Syst. Biol.
Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère
2013 J jnl
Translation of SBGN maps: Process Description to Activity Flow.
BMC Syst. Biol.
Torsten Vogt, Tobias Czauderna, Falk Schreiber
2012 J jnl
CentiLib: comprehensive analysis and exploration of network centralities.
Bioinform.
Johannes Gräßler, Dirk Koschützki, Falk Schreiber
2012 J jnl
FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks.
BMC Syst. Biol.
Hendrik Rohn, Anja Hartmann, Astrid Junker, Björn H. Junker, Falk Schreiber
2012 J jnl
Guiding the interactive exploration of metabolic pathway interconnections.
Inf. Vis.
Ilir Jusufi, Christian Klukas, Andreas Kerren, Falk Schreiber
2012 J jnl
IDPredictor: predict database links in biomedical database.
J. Integr. Bioinform.
Hendrik Mehlhorn, Matthias Lange, Uwe Scholz, Falk Schreiber
2012 J jnl
MetaCrop 2.0: managing and exploring information about crop plant metabolism.
Nucleic Acids Res.
Falk Schreiber, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Uwe Scholz, Stephan Weise
2012 J jnl
Nutrilyzer: A Tool for Deciphering Atomic Stoichiometry of Differentially Expressed Paralogous Proteins.
J. Integr. Bioinform.
Katrin Lotz, Falk Schreiber, Röbbe Wünschiers
2012 J jnl
Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinform.
Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber
2012 Misc conf
Toward the role of interaction in visual analytics.
WSC
Andreas Kerren, Falk Schreiber
2012 J jnl
VANTED v2: a framework for systems biology applications.
BMC Syst. Biol.
Hendrik Rohn, Astrid Junker, Anja Hartmann, Eva Grafahrend-Belau, Hendrik Treutler, Matthias Klapperstück, Tobias Czauderna, Christian Klukas, Falk Schreiber
2012 Misc conf
Visualization of mappings between the gene ontology and cluster trees.
Visualization and Data Analysis
Ilir Jusufi, Andreas Kerren, Vladyslav Aleksakhin, Falk Schreiber
2011 J jnl
Creating views on integrated multidomain data.
Bioinform.
Hendrik Rohn, Christian Klukas, Falk Schreiber
2011 J jnl
DBE2 - Management of experimental data for the VANTED system.
J. Integr. Bioinform.
Hendrik Mehlhorn, Falk Schreiber
2011 J jnl
Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen.
it Inf. Technol.
Stephan Weise, Jinbo Chen, Björn H. Junker, Matthias Klapperstück, Matthias Lange, Falk Schreiber, Uwe Scholz
2011 J jnl
HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping.
BMC Bioinform.
Anja Hartmann, Tobias Czauderna, Roberto Hoffmann, Nils Stein, Falk Schreiber
2011 — conf
Integration and exploration of biological networks.
GI-Jahrestagung
Hendrik Mehlhorn, Falk Schreiber
2011 — book
Modeling in Systems Biology, The Petri Net Approach
Ina Koch, Wolfgang Reisig, Falk Schreiber
2011 — conf
Visual Analytics of Multimodal Biological Data.
IMAGAPP/IVAPP
Hendrik Rohn, Christian Klukas, Falk Schreiber
2010 J jnl
Editing, validating and translating of SBGN maps.
Bioinform.
Tobias Czauderna, Christian Klukas, Falk Schreiber
2010 J jnl
Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets.
BMC Bioinform.
Michael Scharfe, Rainer Pielot, Falk Schreiber
2010 J jnl
Integration of -omics data and networks for biomedical research with VANTED.
J. Integr. Bioinform.
Christian Klukas, Falk Schreiber
2010 J jnl
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches.
J. Integr. Bioinform.
Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise
2009 J jnl
A generic algorithm for layout of biological networks.
BMC Bioinform.
Falk Schreiber, Tim Dwyer, Kim Marriott, Michael Wybrow
2009 — conf
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism.
DILS
Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber
2009 J jnl
Analyse und Visualisierung biologischer Netzwerke.
Inform. Spektrum
Falk Schreiber
2009 — conf
CUDA-based Multi-core Implementation of MDS-based Bioinformatics Algorithms.
GCB
Thilo Fester, Falk Schreiber, Marc Strickert
2009 — conf
Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen.
GI Jahrestagung
Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber
2009 J jnl
FBA-SimVis: interactive visualization of constraint-based metabolic models.
Bioinform.
Eva Grafahrend-Belau, Christian Klukas, Björn H. Junker, Falk Schreiber
2009 — ed.
German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany
GCB
Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber, Peter F. Stadler
2009 — conf
Integration and Visualisation of Multimodal Biological Data.
GCB
Hendrik Rohn, Christian Klukas, Falk Schreiber
2009 J jnl
Kavosh: a new algorithm for finding network motifs.
BMC Bioinform.
Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabian, Elahe Elahi, Abbas Nowzari-Dalini, Elnaz Saberi Ansari, Sahar Asadi, Shahin Mohammadi, Falk Schreiber, Ali Masoudi-Nejad
2009 — conf
Multimodal Registration of NMR-volumes and Histological Cross-sections of Barley Grains on the Cell Broadband Engine Processor.
VISAPP (1)
Rainer Pielot, Udo Seiffert, Bertram Manz, Diana Weier, Frank Volke, Falk Schreiber, Winfriede Weschke
2009 A conf
On Open Problems in Biological Network Visualization.
GD
Mario Albrecht, Andreas Kerren, Karsten Klein, Oliver Kohlbacher, Petra Mutzel, Wolfgang Paul, Falk Schreiber, Michael Wybrow
2009 C conf
Visual Analysis of Overlapping Biological Networks.
IV
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu
2008 J jnl
2.5D Visualisation of Overlapping Biological Networks.
J. Integr. Bioinform.
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu
2008 J jnl
Exploration of Networks using overview+detail with Constraint-based cooperative layout.
IEEE Trans. Vis. Comput. Graph.
Tim Dwyer, Kim Marriott, Falk Schreiber, Peter J. Stuckey, Michael Woodward, Michael Wybrow
2008 J jnl
MetaCrop: a detailed database of crop plant metabolism.
Nucleic Acids Res.
Eva Grafahrend-Belau, Stephan Weise, Dirk Koschützki, Uwe Scholz, Björn H. Junker, Falk Schreiber
2008 J jnl
Modularization of biochemical networks based on classification of Petri net t-invariants.
BMC Bioinform.
Eva Grafahrend-Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Björn H. Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch
2007 J jnl
Community-based Linking of Biological Network Resources: Databases, Formats and Tools.
J. Integr. Bioinform.
Michael Telgkamp, Dirk Koschützki, Henning Schwöbbermeyer, Falk Schreiber
2007 J jnl
Dynamic exploration and editing of KEGG pathway diagrams.
Bioinform.
Christian Klukas, Falk Schreiber
2006 — conf
Coordinated perspectives and enhanced force-directed layout for the analysis of network motifs.
APVIS
Christian Klukas, Falk Schreiber, Henning Schwöbbermeyer
2006 J jnl
Exploration of biological network centralities with CentiBiN.
BMC Bioinform.
Björn H. Junker, Dirk Koschützki, Falk Schreiber
2006 J jnl
Kinetic Modelling with the Systems Biology Modelling Environment SyBME.
J. Integr. Bioinform.
Björn H. Junker, Dirk Koschützki, Falk Schreiber
2006 J jnl
Meta-All: a system for managing metabolic pathway information.
BMC Bioinform.
Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker
2006 J jnl
VANTED: A system for advanced data analysis and visualization in the context of biological networks.
BMC Bioinform.
Björn H. Junker, Christian Klukas, Falk Schreiber
2006 — conf
Visual analysis of network centralities.
APVIS
Tim Dwyer, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu
2005 J jnl
Frequency Concepts and Pattern Detection for the Analysis of Motifs in Networks.
Trans. Comp. Sys. Biology
Falk Schreiber, Henning Schwöbbermeyer
2005 J jnl
Graph Pattern Analysis with PatternGravisto.
J. Graph Algorithms Appl.
Christian Klukas, Dirk Koschützki, Falk Schreiber
2005 J jnl
MAVisto: a tool for the exploration of network motifs.
Bioinform.
Falk Schreiber, Henning Schwöbbermeyer
2004 — ch.
BioPath - Exploration and Visualization of Biochemical Pathways.
Graph Drawing Software
Franz J. Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber
2004 — conf
Comparison of Centralities for Biological Networks.
German Conference on Bioinformatics
Dirk Koschützki, Falk Schreiber
2004 — conf
Flexible Layering in Hierarchical Drawings with Nodes of Arbitrary Size.
ACSC
Carsten Friedrich, Falk Schreiber
2004 J jnl
Integrating data from biological experiments into metabolic networks with the DBE information system.
Silico Biol.
Ljudmilla Borisjuk, Mohammad-Reza Hajirezaei, Christian Klukas, Hardy Rolletschek, Falk Schreiber
2004 — conf
Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation.
InVis.au
Tim Dwyer, Falk Schreiber
2004 B conf
Representing Experimental Biological Data in Metabolic Networks.
APBC
Tim Dwyer, Hardy Rolletschek, Falk Schreiber
2004 — conf
Visual Triangulation of Network-Based Phylogenetic Trees.
VisSym
Ulrik Brandes, Tim Dwyer, Falk Schreiber
2004 J jnl
Visual Understanding of Metabolic Pathways Across Organisms Using Layout in Two and a Half Dimensions.
J. Integr. Bioinform.
Ulrik Brandes, Tim Dwyer, Falk Schreiber
2003 B conf
Comparison of Metabolic Pathways using Constraint Graph Drawing.
APBC
Falk Schreiber
2003 J jnl
Visual comparison of metabolic pathways.
J. Vis. Lang. Comput.
Falk Schreiber
2003 A conf
Visualizing Related Metabolic Pathways in Two and a Half Dimensions.
GD
Ulrik Brandes, Tim Dwyer, Falk Schreiber
2002 J jnl
High quality visualization of biochemical pathways in BioPath.
Silico Biol.
Falk Schreiber
2002 J jnl
The system architecture of the BioPath system.
Silico Biol.
Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber, Franz-Josef Brandenburg
2001 — conf
BioPath Visualization of Biochemical Pathways.
German Conference on Bioinformatics
Franz-Josef Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber
2001 A conf
BioPath.
GD
Franz-Josef Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber
2001 — —
Visualisierung biochemischer Reaktionsnetze
Falk Schreiber
1999 A conf
Electronic Biochemical Pathways.
GD
Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach
1999 A conf
Graph-Drawing Contest Report.
GD
Franz-Josef Brandenburg, Michael Jünger, Joe Marks, Petra Mutzel, Falk Schreiber
1999 — conf
Interactive Biochemical Pathways.
German Conference on Bioinformatics
Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach
1998 A conf
NP-Completeness of Some Tree-Clustering Problems.
GD
Falk Schreiber, Konstantin Skodinis
1997 A conf
Graphs in METAFrame: The Unifying Power of Polymorphism.
TACAS
Michael von der Beeck, Volker Braun, Andreas Claßen, Achim Dannecker, Carsten Friedrich, Dirk Koschützki, Tiziana Margaria, Falk Schreiber, Bernhard Steffen