Fahad Saeed - RankMe

86 papers A* 1A 2B 5Journal 37Unranked 40

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Hyperspectral image compression with deep learning: A review. Signal Process. Fahad Saeed, Shumin Liu, Yelin Liu, Jie Chen
2025	J	`jnl`	Machine-learning models for Alzheimer's disease diagnosis using neuroimaging data: survey, reproducibility, and generalizability evaluation. Brain Informatics Maryam Akhavan Aghdam, Serdar Bozdag, Fahad Saeed
2025	J	`jnl`	Overcoming Site Variability in Multisite fMRI Studies: an Autoencoder Framework for Enhanced Generalizability of Machine Learning Models. Neuroinformatics Fahad Almuqhim, Fahad Saeed
2025	A	`conf`	RAPTOR: Reconfigurable Advanced Platform for Transdisciplinary Open Research. HPDC Hamed Najafi, Pratik Poudel, Kiavash Bahreini, Julio Ibarra, Fahad Saeed, Yuepeng Li, Jayantha Obeysekera, Jason Liu
2025	A*	`conf`	fairGNN-WOD: Fair Graph Learning Without Complete Demographics. IJCAI Zichong Wang, Fang Liu, Shimei Pan, Jun Liu, Fahad Saeed, Meikang Qiu, Wenbin Zhang
2024	B	`conf`	Lightweight Transformer exhibits comparable performance to LLMs for Seizure Prediction: A case for light-weight models for EEG data. IEEE Big Data Paras Parani, Umair Mohammad, Fahad Saeed
2024	—	`conf`	Pvtad: Alzheimer's Disease Diagnosis Using Pyramid Vision Transformer Applied to White Matter of T1-Weighted Structural Mri Data. ISBI Maryam Akhavan Aghdam, Serdar Bozdag, Fahad Saeed
2024	—	`conf`	Robustness of ML-Based Seizure Prediction Using Noisy EEG Data From Limited Channels. DCOSS-IoT Umair Mohammad, Fahad Saeed
2023	—	`conf`	ASD-GResTM: Deep Learning Framework for ASD classification using Gramian Angular Field. BIBM Fahad Almuqhim, Fahad Saeed
2023	J	`jnl`	Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data. Neuroinformatics Oswaldo Artiles, Zeina Al Masry, Fahad Saeed
2023	—	`conf`	Energy Efficient AI/ML based Continuous Monitoring at the Edge: ECG and EEG Case Study. BIBM Umair Mohammad, Fahad Saeed
2023	J	`jnl`	PPAD: a deep learning architecture to predict progression of Alzheimer's disease. Bioinform. Mohammad Al Olaimat, Jared Martinez, Fahad Saeed, Serdar Bozdag
2023	—	`conf`	Q-CASA Invited Speakers Quantum-Centric Supercomputing Strategies for Neuroscience problems: Challenges and Progress. IPDPS Workshops Robert Loredo, Fahad Saeed
2022	J	`jnl`	Biomedical IoT: Enabling Technologies, Architectural Elements, Challenges, and Future Directions. IEEE Access Mohammed Aledhari, Rehma Razzak, Basheer Qolomany, Ala I. Al-Fuqaha, Fahad Saeed
2022	B	`conf`	Classification of Autism Spectrum Disorder Using rs-fMRI data and Graph Convolutional Networks. IEEE Big Data Tianren Yang, Mai A. Al-Duailij, Serdar Bozdag, Fahad Saeed
2022	J	`jnl`	Communication lower-bounds for distributed-memory computations for mass spectrometry based omics data. J. Parallel Distributed Comput. Fahad Saeed, Muhammad Haseeb, S. S. Iyengar
2022	—	`book`	High-Performance Algorithms for Mass Spectrometry-Based Omics Fahad Saeed, Muhammad Haseeb, Sumesh Kumar
2022	—	`conf`	SPERTL: Epileptic Seizure Prediction using EEG with ResNets and Transfer Learning. BHI Umair Mohammad, Fahad Saeed
2021	J	`jnl`	A Deep Learning-Based Data Minimization Algorithm for Fast and Secure Transfer of Big Genomic Datasets. IEEE Trans. Big Data Mohammed Aledhari, Marianne Di Pierro, Mohamed Hefeida, Fahad Saeed
2021	—	`conf`	A Multi-Factorial Assessment of Functional Human Autistic Spectrum Brain Network Analysis. BIBM Oswaldo Artiles, Fahad Saeed
2021	J	`jnl`	ASD-SAENet: A Sparse Autoencoder, and Deep-Neural Network Model for Detecting Autism Spectrum Disorder (ASD) Using fMRI Data. Frontiers Comput. Neurosci. Fahad Almuqhim, Fahad Saeed
2021	J	`jnl`	Benchmarking mass spectrometry based proteomics algorithms using a simulated database. Netw. Model. Anal. Health Informatics Bioinform. Muaaz Gul Awan, Abdullah Gul Awan, Fahad Saeed
2021	B	`conf`	Communication-avoiding micro-architecture to compute Xcorr scores for peptide identification. FPL Sumesh Kumar, Fahad Saeed
2021	J	`jnl`	Communication-avoiding micro-architecture to compute Xcorr scores for peptide identification. CoRR Sumesh Kumar, Fahad Saeed
2021	—	`conf`	DeepCOVIDNet: Deep Convolutional Neural Network for COVID-19 Detection from Chest Radiographic Images. BIBM Khandaker Mamun Ahmed, Taban Eslami, Fahad Saeed, M. Hadi Amini
2021	—	`conf`	Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter. BIBM Muhammad Usman Tariq, Dennys Leyvay, Francisco Alberto Fernandez Limaz, Fahad Saeed
2021	J	`jnl`	HiCOPS: High Performance Computing Framework for Tera-Scale Database Search of Mass Spectrometry based Omics Data. CoRR Muhammad Haseeb, Fahad Saeed
2021	J	`jnl`	High performance computing framework for tera-scale database search of mass spectrometry data. Nat. Comput. Sci. Muhammad Haseeb, Fahad Saeed
2021	J	`jnl`	Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey. IEEE Access Muhammad Usman Tariq, Muhammad Haseeb, Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
2021	—	`conf`	Real-time peptide identification from high-throughput mass-spectrometry data. BCB Sumesh Kumar, Fahad Saeed
2021	—	`conf`	Search feasibility in distributed MS-proteomics big data. BCB Umair Mohammad, Fahad Saeed
2021	—	`conf`	Simulation Testbed for Evaluating Distributed Querying and Searching of Mass Spectrometry Big Data in a Network-based Infrastructure. BigDataService Umair Mohammad, Fahad Saeed
2021	J	`jnl`	Smart delivery and retrieval of swab collection kit for COVID-19 test using autonomous Unmanned Aerial Vehicles. Phys. Commun. Fahad Saeed, Amjad Mehmood, Muhammad Faran Majeed, Carsten Maple, Khalid Saeed, Muhammad Kashif Khattak, Huihui Wang, Gregory Epiphaniou
2021	—	`conf`	TurboBC: A Memory Efficient and Scalable GPU Based Betweenness Centrality Algorithm in the Language of Linear Algebra. ICPP Workshops Oswaldo Artiles, Fahad Saeed
2021	—	`conf`	TurboBFS: GPU Based Breadth-First Search (BFS) Algorithms in the Language of Linear Algebra. IPDPS Workshops Oswaldo Artiles, Fahad Saeed
2020	J	`jnl`	Communication Lower-Bounds for Distributed-Memory Computations for Mass Spectrometry based Omics Data. CoRR Fahad Saeed
2020	J	`jnl`	Explainable and Scalable Machine-Learning Algorithms for Detection of Autism Spectrum Disorder using fMRI Data. CoRR Taban Eslami, Joseph S. Raiker, Fahad Saeed
2020	J	`jnl`	Federated Learning: A Survey on Enabling Technologies, Protocols, and Applications. IEEE Access Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
2020	J	`jnl`	Machine Learning Methods for Diagnosing Autism Spectrum Disorder and Attention- Deficit/Hyperactivity Disorder Using Functional and Structural MRI: A Survey. Frontiers Neuroinformatics Taban Eslami, Fahad Almuqhim, Joseph S. Raiker, Fahad Saeed
2019	J	`jnl`	ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data. Frontiers Neuroinformatics Taban Eslami, Vahid Mirjalili, Alvis Cheuk M. Fong, Angela R. Laird, Fahad Saeed
2019	J	`jnl`	ASD-DiagNet: A hybrid learning approach for detection of Autism Spectrum Disorder using fMRI data. CoRR Taban Eslami, Vahid Mirjalili, Alvis Cheuk M. Fong, Angela R. Laird, Fahad Saeed
2019	—	`conf`	Auto-ASD-Network: A Technique Based on Deep Learning and Support Vector Machines for Diagnosing Autism Spectrum Disorder using fMRI Data. BCB Taban Eslami, Fahad Saeed
2019	—	`conf`	Efficient Shared Peak Counting in Database Peptide Search Using Compact Data Structure for Fragment-Ion Index. BIBM Muhammad Haseeb, Fahad Saeed
2019	—	`conf`	GPU-DFC: A GPU-Based Parallel Algorithm for Computing Dynamic-Functional Connectivity of Big fMRI Data. BigDataService Taban Eslami, Fahad Saeed
2019	—	`conf`	GPU-SFFT: A GPU based parallel algorithm for computing the Sparse Fast Fourier Transform (SFFT) of k-sparse signals. IEEE BigData Oswaldo Artiles, Fahad Saeed
2019	—	`conf`	LBE: A Computational Load Balancing Algorithm for Speeding up Parallel Peptide Search in Mass-Spectrometry Based Proteomics. IPDPS Workshops Muhammad Haseeb, Fatima Afzali, Fahad Saeed
2019	—	`conf`	Optimized CNN-based Diagnosis System to Detect the Pneumonia from Chest Radiographs. BIBM Mohammed Aledhari, Shelby Joji, Mohamed Hefeida, Fahad Saeed
2018	—	`conf`	A Fourier-Based Data Minimization Algorithm for Fast and Secure Transfer of Big Genomic Datasets. BigData Congress Mohammed Aledhari, Marianne Di Pierro, Fahad Saeed
2018	—	`conf`	Efficient Resource Distribution in Cloud and Fog Computing. NBiS Mubashar Mehmood, Nadeem Javaid, Junaid Akram, Sadam Hussain Abbasi, Abdul Rahman, Fahad Saeed
2018	J	`jnl`	GPU-DAEMON: GPU algorithm design, data management & optimization template for array based big omics data. Comput. Biol. Medicine Muaaz Gul Awan, Taban Eslami, Fahad Saeed
2018	—	`conf`	Parallel Sampling-Pipeline for Indefinite Stream of Heterogeneous Graphs using OpenCL for FPGAs. IEEE BigData Muhammad Usman Tariq, Fahad Saeed
2018	—	`conf`	Similarity based classification of ADHD using singular value decomposition. CF Taban Eslami, Fahad Saeed
2017	J	`jnl`	A Hybrid MPI-OpenMP Strategy to Speedup the Compression of Big Next-Generation Sequencing Datasets. IEEE Trans. Parallel Distributed Syst. Sandino Vargas Perez, Fahad Saeed
2017	B	`conf`	A New Cryptography Algorithm to Protect Cloud-Based Healthcare Services. CHASE Mohammed Aledhari, Ali F. Marhoon, Ali Hamad, Fahad Saeed
2017	—	`conf`	An Out-of-Core GPU based Dimensionality Reduction Algorithm for Big Mass Spectrometry Data and Its Application in Bottom-up Proteomics. BCB Muaaz Gul Awan, Fahad Saeed
2017	—	`conf`	GPU-PCC: A GPU Based Technique to Compute Pairwise Pearson's Correlation Coefficients for Big fMRI Data. BCB Taban Eslami, Muaaz Gul Awan, Fahad Saeed
2017	—	`conf`	Power-efficient and highly scalable parallel graph sampling using FPGAs. ReConFig Muhammad Usman Tariq, Umer I. Cheema, Fahad Saeed
2017	—	`conf`	Scalable data structure to compress next-generation sequencing files and its application to compressive genomics. BIBM Sandino Vargas Perez, Fahad Saeed
2016	—	`conf`	A Variable-Length Network Encoding Protocol for Big Genomic Data. WWIC Mohammed Aledhari, Mohamed S. Hefeida, Fahad Saeed
2016	—	`conf`	A parallel peptide indexer and decoy generator for crux tide using OpenMP. HPCS Majdi Maabreh, Ajay Gupta, Fahad Saeed
2016	—	`conf`	Data Aware Communication for Energy Harvesting Sensor Networks. WWIC Mohamed S. Hefeida, Fahad Saeed
2016	—	`conf`	GPU-ArraySort: A Parallel, In-Place Algorithm for Sorting Large Number of Arrays. ICPP Workshops Muaaz Gul Awan, Fahad Saeed
2016	J	`jnl`	Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015). J. Bioinform. Comput. Biol. Fahad Saeed, Nurit Haspel, Hisham Al-Mubaid
2016	J	`jnl`	MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing. Bioinform. Muaaz Gul Awan, Fahad Saeed
2015	—	`conf`	A Parallel Algorithm for Compression of Big Next-Generation Sequencing Datasets. TrustCom/BigDataSE/ISPA (3) Sandino Vargas Perez, Fahad Saeed
2015	—	`conf`	Big data proteogenomics and high performance computing: Challenges and opportunities. GlobalSIP Fahad Saeed
2015	—	`conf`	Design and Implementation of Network Transfer Protocol for Big Genomic Data. BigData Congress Mohammed Aledhari, Fahad Saeed
2014	J	`jnl`	CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling. IEEE ACM Trans. Comput. Biol. Bioinform. Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
2014	J	`jnl`	Exploiting thread-level and instruction-level parallelism to cluster mass spectrometry data using multicore architectures. Netw. Model. Anal. Health Informatics Bioinform. Fahad Saeed, Jason D. Hoffert, Trairak Pisitkun, Mark A. Knepper
2014	J	`jnl`	Foreword. J. Bioinform. Comput. Biol. Fahad Saeed, Hisham Al-Mubaid, Bhaskar DasGupta
2013	B	`conf`	A high performance algorithm for clustering of large-scale protein mass spectrometry data using multi-core architectures. ASONAM Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
2013	J	`jnl`	An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data CoRR Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
2013	J	`jnl`	Foreword to the Special Issue on Selected Papers from the 5th International Conference on Bioinformatics and Computational Biology (Bicob 2013). J. Bioinform. Comput. Biol. Bhaskar DasGupta, Hisham Al-Mubaid, Fahad Saeed
2012	J	`jnl`	A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes. J. Parallel Distributed Comput. Fahad Saeed, Alan Perez-Rathke, Jaroslaw Gwarnicki, Tanya Y. Berger-Wolf, Ashfaq A. Khokhar
2012	—	`conf`	An efficient algorithm for clustering of large-scale mass spectrometry data. BIBM Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
2012	—	`conf`	An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data. BIBM Workshops Fahad Saeed, Trairak Pisitkun, Jason D. Hoffert, Guanghui Wang, Marjan Gucek, Mark A. Knepper
2012	—	`conf`	High performance phosphorylation site assignment algorithm for mass spectrometry data using multicore systems. BCB Fahad Saeed, Jason D. Hoffert, Trairak Pisitkun, Mark A. Knepper
2011	J	`jnl`	Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data CoRR Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
2011	—	`conf`	Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data. BICoB Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
2009	J	`jnl`	A Domain Decomposition Strategy for Alignment of Multiple Biological Sequences on Multiprocessor Platforms CoRR Fahad Saeed, Ashfaq A. Khokhar
2009	J	`jnl`	A domain decomposition strategy for alignment of multiple biological sequences on multiprocessor platforms. J. Parallel Distributed Comput. Fahad Saeed, Ashfaq A. Khokhar
2009	J	`jnl`	An Overview of Multiple Sequence Alignment Systems CoRR Fahad Saeed, Ashfaq A. Khokhar
2009	—	`conf`	Multiple Sequence Alignment System for Pyrosequencing Reads. BICoB Fahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi, Niko Beerenwinkel
2009	J	`jnl`	Pyro-Align: Sample-Align based Multiple Alignment system for Pyrosequencing Reads of Large Number CoRR Fahad Saeed
2009	J	`jnl`	Sample-Align-D: A High Performance Multiple Sequence Alignment System using Phylogenetic Sampling and Domain Decomposition CoRR Fahad Saeed, Ashfaq A. Khokhar
2008	A	`conf`	Sample-Align-D: A high performance Multiple Sequence Alignment system using phylogenetic sampling and domain decomposition. IPDPS Fahad Saeed, Ashfaq A. Khokhar