Fabrizio Ferrè

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2018 J jnl
BEAM web server: a tool for structural RNA motif discovery.
Bioinform.
Marco Pietrosanto, Marta Adinolfi, Riccardo Casula, Gabriele Ausiello, Fabrizio Ferrè, Manuela Helmer-Citterich
2016 J jnl
Revealing protein-lncRNA interaction.
Briefings Bioinform.
Fabrizio Ferrè, Alessio Colantoni, Manuela Helmer-Citterich
2015 J jnl
Web-Beagle: a web server for the alignment of RNA secondary structures.
Nucleic Acids Res.
Eugenio Mattei, Marco Pietrosanto, Fabrizio Ferrè, Manuela Helmer-Citterich
2013 J jnl
DBATE: database of alternative transcripts expression.
Database J. Biol. Databases Curation
Valerio Bianchi, Alessio Colantoni, Alberto Calderone, Gabriele Ausiello, Fabrizio Ferrè, Manuela Helmer-Citterich
2013 J jnl
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures.
Nucleic Acids Res.
Luca Parca, Fabrizio Ferrè, Gabriele Ausiello, Manuela Helmer-Citterich
2013 J jnl
webPDBinder: a server for the identification of ligand binding sites on protein structures.
Nucleic Acids Res.
Valerio Bianchi, Iolanda Mangone, Fabrizio Ferrè, Manuela Helmer-Citterich, Gabriele Ausiello
2007 J jnl
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Nucleic Acids Res.
Fabrizio Ferrè, Yann Ponty, W. A. Lorenz, Peter Clote
2006 J jnl
BTW: a web server for Boltzmann time warping of gene expression time series.
Nucleic Acids Res.
Fabrizio Ferrè, Peter Clote
2006 J jnl
DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification.
Nucleic Acids Res.
Fabrizio Ferrè, Peter Clote
2005 J jnl
DiANNA: a web server for disulfide connectivity prediction.
Nucleic Acids Res.
Fabrizio Ferrè, Peter Clote
2005 J jnl
Disulfide connectivity prediction using secondary structure information and diresidue frequencies.
Bioinform.
Fabrizio Ferrè, Peter Clote
2005 J jnl
Functional annotation by identification of local surface similarities: a novel tool for structural genomics.
BMC Bioinform.
Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich
2004 J jnl
SURFACE: a database of protein surface regions for functional annotation.
Nucleic Acids Res.
Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich
2003 J jnl
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.
Nucleic Acids Res.
Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson