Fabrizio Costa

58 papers A* 4A 2B 7Journal 29Unranked 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Learning to generate feasible graphs using graph grammars. CoRR Stefan Mautner, Rolf Backofen, Fabrizio Costa
2020	J	`jnl`	Heterogeneous networks integration for disease-gene prioritization with node kernels. Bioinform. Dinh Van Tran, Alessandro Sperduti, Rolf Backofen, Fabrizio Costa
2019	B	`conf`	Progress Towards Graph Optimization: Efficient Learning of Vector to Graph Space Mappings. ESANN Stefan Mautner, Rolf Backofen, Fabrizio Costa
2019	J	`jnl`	ShaKer: RNA SHAPE prediction using graph kernel. Bioinform. Stefan Mautner, Soheila Montaseri, Milad Miladi, Martin Raden, Fabrizio Costa, Rolf Backofen
2018	J	`jnl`	Freiburg RNA tools: a central online resource for RNA-focused research and teaching. Nucleic Acids Res. Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
2018	J	`jnl`	The conjunctive disjunctive graph node kernel for disease gene prioritization. Neurocomputing Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa
2017	J	`jnl`	An efficient graph kernel method for non-coding RNA functional prediction. Bioinform. Nicolò Navarin, Fabrizio Costa
2017	B	`conf`	Fast hyperparameter selection for graph kernels via subsampling and multiple kernel learning. ESANN Michele Donini, Nicolò Navarin, Ivano Lauriola, Fabio Aiolli, Fabrizio Costa
2017	—	`conf`	Joint Neighborhood Subgraphs Link Prediction. ICONIP (1) Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa
2017	J	`jnl`	Learning an efficient constructive sampler for graphs. Artif. Intell. Fabrizio Costa
2017	—	`conf`	Link Enrichment for Diffusion-Based Graph Node Kernels. ICANN (2) Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa
2017	J	`jnl`	RNAscClust: clustering RNA sequences using structure conservation and graph based motifs. Bioinform. Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen
2017	B	`conf`	The Conjunctive Disjunctive Node Kernel. ESANN Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa
2016	B	`conf`	AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. RECOMB Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
2016	J	`jnl`	AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. CoRR Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
2016	J	`jnl`	Characterizing leader sequences of CRISPR loci. Bioinform. Omer S. Alkhnbashi, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Fabrizio Costa, Rolf Backofen
2016	J	`jnl`	RNAcommender: genome-wide recommendation of RNA-protein interactions. Bioinform. Gianluca Corrado, Toma Tebaldi, Fabrizio Costa, Paolo Frasconi, Andrea Passerini
2016	B	`conf`	RNAsynth: constraints learning for RNA inverse folding. ESANN Fabrizio Costa, Parastou Kohvaei, Robert Kleinkauf
2016	J	`jnl`	SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification. BMC Bioinform. João Victor de Araújo Oliveira, Fabrizio Costa, Rolf Backofen, Peter F. Stadler, Maria Emília Telles Walter, Jana Hertel
2015	J	`jnl`	ASSIsT: an automatic SNP scoring tool for in- and outbreeding species. Bioinform. Mario Di Guardo, Diego Micheletti, Luca Bianco, Herma J. J. Koehorst-van Putten, Sara Longhi, Fabrizio Costa, Maria José Aranzana, Riccardo Velasco, Pere Arús, Michela Troggio, Eric W. van de Weg
2015	A*	`conf`	kLog: A Language for Logical and Relational Learning with Kernels (Extended Abstract). IJCAI Paolo Frasconi, Fabrizio Costa, Luc De Raedt, Kurt De Grave
2014	J	`jnl`	BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles. Bioinform. Pavankumar Videm, Dominic Rose, Fabrizio Costa, Rolf Backofen
2014	—	`conf`	Blockclust: efficient clustering and classification of non-coding rnas from short Read RNA-seq profiles. GCB Pavankumar Videm, Dominic Rose, Fabrizio Costa, Rolf Backofen
2014	J	`jnl`	CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci. Bioinform. Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Rolf Backofen
2014	J	`jnl`	MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions. Bioinform. Kousik Kundu, Martin Mann, Fabrizio Costa, Rolf Backofen
2014	A	`conf`	Relational Regularization and Feature Ranking. SDM Fabrizio Costa, Mathias Verbeke, Luc De Raedt
2014	—	`conf`	Scalable structural clustering of local RNA secondary structures. CMSR@ECCB Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen
2014	J	`jnl`	kLog: A language for logical and relational learning with kernels. Artif. Intell. Paolo Frasconi, Fabrizio Costa, Luc De Raedt, Kurt De Grave
2014	—	`conf`	kLogNLP: Graph Kernel-based Relational Learning of Natural Language. ACL (System Demonstrations) Mathias Verbeke, Paolo Frasconi, Kurt De Grave, Fabrizio Costa, Luc De Raedt
2013	J	`jnl`	A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains. Bioinform. Kousik Kundu, Fabrizio Costa, Rolf Backofen
2012	—	`conf`	A Relational Kernel-Based Framework for Hierarchical Image Understanding. SSPR/SPR Laura Antanas, Paolo Frasconi, Fabrizio Costa, Tinne Tuytelaars, Luc De Raedt
2012	J	`jnl`	GraphClust: alignment-free structural clustering of local RNA secondary structures. Bioinform. Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen
2012	—	`ch.`	Link and Node Prediction in Metabolic Networks with Probabilistic Logic. Bisociative Knowledge Discovery Angelika Kimmig, Fabrizio Costa
2012	J	`jnl`	kLog: A Language for Logical and Relational Learning with Kernels CoRR Paolo Frasconi, Fabrizio Costa, Luc De Raedt, Kurt De Grave
2011	J	`jnl`	Effective feature construction by maximum common subgraph sampling. Mach. Learn. Leander Schietgat, Fabrizio Costa, Jan Ramon, Luc De Raedt
2011	J	`jnl`	Preface. Fundam. Informaticae Jan Ramon, Fabrizio Costa, Christophe Costa Florêncio, Joost N. Kok
2011	A*	`conf`	Random Forest Based Feature Induction. ICDM Celine Vens, Fabrizio Costa
2010	A*	`conf`	Fast Neighborhood Subgraph Pairwise Distance Kernel. ICML Fabrizio Costa, Kurt De Grave
2010	J	`jnl`	Molecular Graph Augmentation with Rings and Functional Groups. J. Chem. Inf. Model. Kurt De Grave, Fabrizio Costa
2009	—	`conf`	Handling missing values and censored data in PCA of pharmacological matrices. KDD Workshop on Statistical and Relational Learning in Bioinformatics Jan Ramon, Fabrizio Costa
2009	—	`conf`	Maximum Common Subgraph Mining: A Fast and Effective Approach towards Feature Generation. MLG/SRL@ILP Leander Schietgat, Fabrizio Costa, Jan Ramon, Luc De Raedt
2009	—	`ed.`	Proceedings of the ACM SIGKDD Workshop on Statistical and Relational Learning in Bioinformatics, Paris, France, June 28, 2009 KDD Workshop on Statistical and Relational Learning in Bioinformatics Christophe Costa Florêncio, Fabrizio Costa, Jan Ramon, Joost N. Kok
2009	J	`jnl`	StReBio'09: statistical relational learning and mining in bioinformatics. SIGKDD Explor. Jan Ramon, Fabrizio Costa, Christophe Costa Florêncio, Joost N. Kok
2008	J	`jnl`	A semiparametric generative model for efficient structured-output supervised learning. Ann. Math. Artif. Intell. Fabrizio Costa, Andrea Passerini, Marco Lippi, Paolo Frasconi
2008	—	`conf`	On the Convergence of Protein Structure and Dynamics. Statistical Learning Studies of Pseudo Folding Pathways. EvoBIO Alessandro Vullo, Andrea Passerini, Paolo Frasconi, Fabrizio Costa, Gianluca Pollastri
2008	—	`conf`	Towards Combining Structured Pattern Mining and Graph Kernels. ICDM Workshops Fabrizio Costa, Björn Bringmann
2007	J	`jnl`	Classification of small molecules by two- and three-dimensional decomposition kernels. Bioinform. Alessio Ceroni, Fabrizio Costa, Paolo Frasconi
2007	—	`ch.`	Comparing Sequence Classification Algorithms for Protein Subcellular Localization. Perspectives of Neural-Symbolic Integration Fabrizio Costa, Sauro Menchetti, Paolo Frasconi
2006	—	`conf`	Decomposition Kernels for Natural Language Processing. Learning Structured Information@EACL Fabrizio Costa, Sauro Menchetti, Alessio Ceroni, Andrea Passerini, Paolo Frasconi
2005	J	`jnl`	Ambiguity resolution analysis in incremental parsing of natural language. IEEE Trans. Neural Networks Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Patrick Sturt, Giovanni Soda
2005	A*	`conf`	Weighted decomposition kernels. ICML Sauro Menchetti, Fabrizio Costa, Paolo Frasconi
2005	J	`jnl`	Wide coverage natural language processing using kernel methods and neural networks for structured data. Pattern Recognit. Lett. Sauro Menchetti, Fabrizio Costa, Paolo Frasconi, Massimiliano Pontil
2004	—	`conf`	Distributed community crawling. WWW (Alternate Track Papers & Posters) Fabrizio Costa, Paolo Frasconi
2003	J	`jnl`	Towards Incremental Parsing of Natural Language Using Recursive Neural Networks. Appl. Intell. Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Giovanni Soda
2002	A	`conf`	Enhancing First-Pass Attachment Prediction. ECAI Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Patrick Sturt, Giovanni Soda
2001	—	`conf`	Wide Coverage Incremental Parsing by Learning Attachment Preferences. AI*IA Fabrizio Costa, Vincenzo Lombardo, Paolo Frasconi, Giovanni Soda
2000	B	`conf`	Learning incremental syntactic structures with recursive neural networks. KES Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Giovanni Soda
1999	B	`conf`	A topological transformation for hidden recursive modelsarchitecture networks. ESANN Fabrizio Costa, Paolo Frasconi, Giovanni Soda