Fabio Rinaldi - RankMe

135 papers A* 2A 3B 13C 3Misc 1Journal 48Unranked 57

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Are the LLMs Capable of Maintaining at Least the Language Genus? CoRR Sandra Mitrovic, David Kletz, Ljiljana Dolamic, Fabio Rinaldi
2025	J	`jnl`	Exploring Data and Parameter Efficient Strategies for Arabic Dialect Identifications. CoRR Vani Kanjirangat, Ljiljana Dolamic, Fabio Rinaldi
2025	—	`conf`	Health-related NLP activities at IDSIA. Ital-IA Fabio Rinaldi, Andrea Franchini, Roberta Noseda, Oscar Lithgow-Serrano, Joseph Cornelius, Lorenzo Ruinelli, Amos Colombo, Sandra Mitrovic, Alessandro Ceschi
2025	A*	`conf`	Tokenization and Representation Biases in Multilingual Models on Dialectal NLP Tasks. EMNLP Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi
2025	J	`jnl`	Tokenization and Representation Biases in Multilingual Models on Dialectal NLP Tasks. CoRR Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi
2024	—	`conf`	BUST: Benchmark for the evaluation of detectors of LLM-Generated Text. NAACL-HLT Joseph Cornelius, Oscar Lithgow-Serrano, Sandra Mitrovic, Ljiljana Dolamic, Fabio Rinaldi
2024	—	`conf`	NLP_DI at NADI 2024 shared task: Multi-label Arabic Dialect Classifications with an Unsupervised Cross-Encoder. ArabicNLP Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi
2023	—	`conf`	Boosting Radiology Report Generation by Infusing Comparison Prior. BioNLP@ACL Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer
2023	J	`jnl`	Boosting Radiology Report Generation by Infusing Comparison Prior. CoRR Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer
2023	—	`conf`	Classification of cancer TNM stage from Japanese radiology report using on-premise LLM at NTCIR-17 MedNLP-SC RR-TNM subtask. NTCIR Koji Fujimoto, Mizuho Nishio, Chikako Tanaka, Morteza Rohanian, Farhad Nooralahzadeh, Michael Krauthammer, Fabio Rinaldi
2023	—	`conf`	Optimizing the Size of Subword Vocabularies in Dialect Classification. VarDial@EACL Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi
2023	—	`ed.`	Proceedings of the Swiss Text Analytics Conference 2022, Lugano, Switzerland, June 8-10, 2022. SwissText Manuela Hürlimann, Roberto Mastropietro, Daniele Puccinelli, Fabio Rinaldi, Mark Cieliebak
2023	—	`conf`	Zero-shot classification of TNM staging for Japanese radiology report using ChatGPT at RR-TNM subtask of NTCIR-17 MedNLP-SC. NTCIR Mizuho Nishio, Hidetoshi Matsuo, Takaaki Matsunaga, Koji Fujimoto, Morteza Rohanian, Farhad Nooralahzadeh, Fabio Rinaldi, Michael Krauthammer
2022	J	`jnl`	An annotated dataset for extracting gene-melanoma relations from scientific literature. J. Biomed. Semant. Roberto Zanoli, Alberto Lavelli, Theresa Löffler, Nicolas Andres Perez Gonzalez, Fabio Rinaldi
2022	—	`conf`	Approach for Named Entity Recognition and Case Identification Implemented by ZuKyo-JA Sub-team at the NTCIR-16 Real-MedNLP Task. NTCIR Koji Fujimoto, Mizuho Nishio, Osamu Sugiyama, Kana Ichikawa, Joseph Cornelius, Oscar Lithgow-Serrano, Vani Kanjirangat, Fabio Rinaldi, Aron N. Horvath, Farhad Nooralahzadeh, Michael Krauthammer
2022	—	`conf`	Early Guessing for Dialect Identification. EMNLP (Findings) Vani Kanjirangat, Tanja Samardzic, Fabio Rinaldi, Ljiljana Dolamic
2022	—	`conf`	Leveraging Token-Based Concept Information and Data Augmentation in Few-Resource NER: ZuKyo-EN at the NTCIR-16 Real-MedNLP task. NTCIR Joseph Cornelius, Oscar Lithgow-Serrano, Vani Kanjirangat, Fabio Rinaldi, Koji Fujimoto, Mizuho Nishio, Osamu Sugiyama, Kana Ichikawa, Farhad Nooralahzadeh, Aron N. Horvath, Michael Krauthammer
2022	—	`conf`	NLP DI at NADI Shared Task Subtask-1: Sub-word Level Convolutional Neural Models and Pre-trained Binary Classifiers for Dialect Identification. WANLP@EMNLP Vani Kanjirangat, Tanja Samardzic, Ljiljana Dolamic, Fabio Rinaldi
2022	—	`ed.`	Proceedings of the 13th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7, 2022 LOUHI@EMNLP Alberto Lavelli, Eben Holderness, Antonio Jimeno-Yepes, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2022	J	`jnl`	Revisiting the decay of scientific email addresses. J. Assoc. Inf. Sci. Technol. Raul Rodriguez-Esteban, Dina Vishnyakova, Fabio Rinaldi
2022	—	`conf`	mattica@SMM4H'22: Leveraging sentiment for stance & premise joint learning. SMM4H@COLING Oscar Lithgow-Serrano, Joseph Cornelius, Fabio Rinaldi, Ljiljana Dolamic
2021	—	`conf`	Approaching SMM4H with auto-regressive language models and back-translation. SMM4H@NAACL-HLT Joseph Cornelius, Tilia Ellendorff, Fabio Rinaldi
2021	J	`jnl`	Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information. J. Biomed. Informatics Vani Kanjirangat, Fabio Rinaldi
2021	J	`jnl`	Learning adaptive representations for entity recognition in the biomedical domain. J. Biomed. Semant. Ivano Lauriola, Fabio Aiolli, Alberto Lavelli, Fabio Rinaldi
2021	J	`jnl`	MultiGBS: A multi-layer graph approach to biomedical summarization. J. Biomed. Informatics Ensieh Davoodijam, Nasser Ghadiri, Maryam Lotfi Shahreza, Fabio Rinaldi
2021	—	`conf`	Negation typology and general representation models for cross-lingual zero-shot negation scope resolution in Russian, French, and Spanish. NAACL-HLT (Student Research Workshop) Anastassia Shaitarova, Fabio Rinaldi
2021	J	`jnl`	Parallel sequence tagging for concept recognition. BMC Bioinform. Lenz Furrer, Joseph Cornelius, Fabio Rinaldi
2021	—	`ed.`	Proceedings of the 12th International Workshop on Health Text Mining and Information Analysis, LOUHI@EACL, Online, April 19, 2021 LOUHI@EACL Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2020	—	`conf`	Annotating the Pandemic: Named Entity Recognition and Normalisation in COVID-19 Literature. NLP4COVID@EMNLP Nico Colic, Lenz Furrer, Fabio Rinaldi
2020	—	`conf`	Automated Detection of Adverse Drug Events from Older Patients' Electronic Medical Records Using Text Mining. ICPR Workshops (1) Nicola Colic, Patrick Beeler, Chantal Csajka, Vasiliki Foufi, Frederic Gaspar, Marie-Annick Le Pogam, Angela Lisibach, Christian Lovis, Monika Lutters, Fabio Rinaldi
2020	—	`conf`	COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media. SMM4H@COLING Joseph Cornelius, Tilia Ellendorff, Lenz Furrer, Fabio Rinaldi
2020	—	`conf`	Cross-lingual Transfer-learning Approach to Negation Scope Resolution. SwissText/KONVENS Anastassia Shaitarova, Lenz Furrer, Lena Hettinger, Fabio Rinaldi
2020	B	`conf`	Exploring the feature space of character-level embeddings. ESANN Ivano Lauriola, Stefano Campese, Alberto Lavelli, Fabio Rinaldi, Fabio Aiolli
2020	J	`jnl`	MultiGBS: A multi-layer graph approach to biomedical summarization. CoRR Ensieh Davoodijam, Nasser Ghadiri, Maryam Lotfi Shahreza, Fabio Rinaldi
2020	J	`jnl`	Parallel sequence tagging for concept recognition. CoRR Lenz Furrer, Joseph Cornelius, Fabio Rinaldi
2020	—	`ed.`	Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2020, Online, November 20, 2020 LOUHI@EMNLP Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2020	J	`jnl`	RBF Solver for Quaternions Interpolation. CoRR Fabio Rinaldi, Daniele Dolci
2020	—	`conf`	SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces. SemEval@COLING Vani Kanjirangat, Sandra Mitrovic, Alessandro Antonucci, Fabio Rinaldi
2020	J	`jnl`	SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces. CoRR Vani Kanjirangat, Sandra Mitrovic, Alessandro Antonucci, Fabio Rinaldi
2019	J	`jnl`	A new approach and gold standard toward author disambiguation in MEDLINE. J. Am. Medical Informatics Assoc. Dina Vishnyakova, Raul Rodriguez-Esteban, Fabio Rinaldi
2019	—	`conf`	Approaching SMM4H with Merged Models and Multi-task Learning. SMM4H@ACL Tilia Ellendorff, Lenz Furrer, Nicola Colic, Noëmi Aepli, Fabio Rinaldi
2019	J	`jnl`	Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review. CoRR Seyedmostafa Sheikhalishahi, Riccardo Miotto, Joel T. Dudley, Alberto Lavelli, Fabio Rinaldi, Venet Osmani
2019	J	`jnl`	OGER++: hybrid multi-type entity recognition. J. Cheminformatics Lenz Furrer, Anna Jancso, Nicola Colic, Fabio Rinaldi
2019	—	`ed.`	Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis LOUHI@EMNLP 2019, Hong Kong, November 3, 2019 LOUHI@EMNLP Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2019	—	`conf`	UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition. BioNLP-OST@EMNLP-IJNCLP Lenz Furrer, Joseph Cornelius, Fabio Rinaldi
2018	—	`conf`	Learning Preferences for Large Scale Multi-label Problems. ICANN (1) Ivano Lauriola, Mirko Polato, Alberto Lavelli, Fabio Rinaldi, Fabio Aiolli
2018	—	`conf`	Learning Representations for Biomedical NER. NL4AI@AI*IA Ivano Lauriola, Riccardo Sella, Fabio Aiolli, Alberto Lavelli, Fabio Rinaldi
2018	—	`ed.`	Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, Louhi@EMNLP 2018, Brussels, Belgium, October 31, 2018 Louhi@EMNLP Alberto Lavelli, Anne-Lyse Minard, Fabio Rinaldi
2018	—	`conf`	UZH@SMM4H: System Descriptions. SMM4H@EMNLP Tilia Ellendorff, Joseph Cornelius, Heath Gordon, Nicola Colic, Fabio Rinaldi
2017	J	`jnl`	Entity recognition in the biomedical domain using a hybrid approach. J. Biomed. Semant. Marco Basaldella, Lenz Furrer, Carlo Tasso, Fabio Rinaldi
2017	J	`jnl`	Erratum: Strategies towards digital and semi-automated curation in RegulonDB. Database J. Biol. Databases Curation Fabio Rinaldi, Oscar Lithgow-Serrano, Socorro Gama-Castro, Hilda Solano-Lira, Alejandra López-Fuentes, Luis Muñiz-Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
2017	J	`jnl`	Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis. Database J. Biol. Databases Curation Yalbi Itzel Balderas-Martínez, Fabio Rinaldi, Gabriela Contreras, Hilda Solano-Lira, Mishael Sánchez-Pérez, Julio Collado-Vides, Moisés Selman, Annie Pardo
2017	J	`jnl`	Strategies towards digital and semi-automated curation in RegulonDB. Database J. Biol. Databases Curation Fabio Rinaldi, Oscar Lithgow-Serrano, Socorro Gama-Castro, Hilda Solano-Lira, Alejandra López-Fuentes, Luis Muñiz-Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
2016	—	`conf`	Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types. BioTxtM@COLING 2016 Dina Vishnyakova, Raul Rodriguez-Esteban, Khan Ozol, Fabio Rinaldi
2016	J	`jnl`	BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. Database J. Biol. Databases Curation Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck
2016	J	`jnl`	Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
2016	—	`ed.`	Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, SMBM 2016, Potsdam, Germany, August 4-5, 2016. SMBM Mariana L. Neves, Fabio Rinaldi, Goran Nenadic, Dietrich Rebholz-Schuhmann
2016	J	`jnl`	RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. Nucleic Acids Res. Socorro Gama-Castro, Heladia Salgado, Alberto Santos-Zavaleta, Daniela Ledezma-Tejeida, Luis Muñiz-Rascado, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Irma Martínez-Flores, Lucia Pannier, Jaime Abraham Castro-Mondragón, Alejandra Medina-Rivera, Hilda Solano-Lira, César Bonavides-Martínez, Ernesto Pérez-Rueda, Shirley Alquicira-Hernández, Liliana Porrón-Sotelo, Alejandra López-Fuentes, Anastasia Hernández-Koutoucheva, Victor del Moral-Chávez, Fabio Rinaldi, Julio Collado-Vides
2016	B	`conf`	The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors. LREC Tilia Ellendorff, Simon Foster, Fabio Rinaldi
2016	—	`conf`	Using a Hybrid Approach for Entity Recognition in the Biomedical Domain. SMBM Marco Basaldella, Lenz Furrer, Nico Colic, Tilia Ellendorff, Carlo Tasso, Fabio Rinaldi
2015	—	`conf`	A Combined Resource of Biomedical Terminology and its Statistics. TIA Tilia Renate Ellendorff, Adrian Van der Lek, Lenz Furrer, Fabio Rinaldi
2015	J	`jnl`	An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database. Polibits Fabio Rinaldi, Oscar Lithgow-Serrano, Alejandra López-Fuentes, Socorro Gama-Castro, Yalbi I. Balderas-Martínez, Hilda Solano-Lira, Julio Collado-Vides
2015	—	`conf`	Constructing a Syndromic Terminology Resource for Veterinary Text Mining. TIA Lenz Furrer, Susanne Küker, John Berezowski, Horst Posthaus, Flavie Vial, Fabio Rinaldi
2015	—	`conf`	Large-scale Information Extraction for Assisted Curation of the Biomedical Literature. IT@LIA@AI*IA Fabio Rinaldi, Lenz Furrer, Simon Clematide
2014	J	`jnl`	Assisted curation of regulatory interactions and growth conditions of OxyR in Database J. Biol. Databases Curation Socorro Gama-Castro, Fabio Rinaldi, Alejandra López-Fuentes, Yalbi Itzel Balderas-Martínez, Simon Clematide, Tilia Renate Ellendorff, Alberto Santos-Zavaleta, Hernani Marques-Madeira, Julio Collado-Vides
2014	J	`jnl`	BioC implementations in Go, Perl, Python and Ruby. Database J. Biol. Databases Curation Wanli Liu, Rezarta Islamaj Dogan, Dongseop Kwon, Hernani Marques, Fabio Rinaldi, W. John Wilbur, Donald C. Comeau
2014	J	`jnl`	BioC interoperability track overview. Database J. Biol. Databases Curation Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2014	J	`jnl`	OntoGene web services for biomedical text mining. BMC Bioinform. Fabio Rinaldi, Simon Clematide, Hernani Marques, Tilia Ellendorff, Martin Romacker, Raul Rodriguez-Esteban
2014	—	`conf`	Semi-Automated Semantic Annotation of the Biomedical Literature. ISWC (Posters & Demos) Fabio Rinaldi
2014	—	`conf`	Text Mining Technologies for Database Curation. KDIR Fabio Rinaldi
2014	B	`conf`	Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction. LREC Tilia Ellendorff, Fabio Rinaldi, Simon Clematide
2013	B	`conf`	Assisted editing in the biomedical domain: motivation and challenges. ACM Symposium on Document Engineering Fabio Rinaldi
2013	J	`jnl`	BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2013	—	`conf`	Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. CLEF Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors
2013	—	`conf`	Exploiting BabelNet for Multilingual Biomedical Synonym Expansion. CLEF (Working Notes) Simon Clematide, Martin Davtyan, Fabio Rinaldi, Dietrich Rebholz-Schuhmann
2013	—	`conf`	Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. CLEF (Working Notes) Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors
2013	—	`conf`	UZH in BioNLP 2013. BioNLP@ACL (Shared Task) Gerold Schneider, Simon Clematide, Tilia Ellendorff, Don Tuggener, Fabio Rinaldi, Gintare Grigonyte
2013	J	`jnl`	Using the OntoGene pipeline for the triage task of BioCreative 2012. Database J. Biol. Databases Curation Fabio Rinaldi, Simon Clematide, Simon Hafner, Gerold Schneider, Gintare Grigonyte, Martin Romacker, Thérèse Vachon
2012	—	`conf`	Change of Biomedical Domain Terminology Over Time. Baltic HLT Gintare Grigonyte, Fabio Rinaldi, Martin Volk
2012	B	`conf`	Dependency parsing for interaction detection in pharmacogenomics. LREC Gerold Schneider, Fabio Rinaldi, Simon Clematide
2012	—	`conf`	Notes about the OntoGene Pipeline. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text Fabio Rinaldi, Simon Clematide, Gerold Schneider, Gintare Grigonyte
2012	J	`jnl`	Ranking relations between diseases, drugs and genes for a curation task. J. Biomed. Semant. Simon Clematide, Fabio Rinaldi
2012	J	`jnl`	Relation mining experiments in the pharmacogenomics domain. J. Biomed. Informatics Fabio Rinaldi, Gerold Schneider, Simon Clematide
2012	—	`conf`	Term Evolution: Use of Biomedical Terminologies. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text Gintare Grigonyte, Fabio Rinaldi, Martin Volk
2012	J	`jnl`	Using ODIN for a PharmGKB revalidation experiment. Database J. Biol. Databases Curation Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman
2012	—	`conf`	Using biomedical databases as knowledge sources for large-scale text mining. E-LKR Fabio Rinaldi
2011	—	`conf`	An Incremental Model for the Coreference Resolution Task of BioNLP 2011. BioNLP@ACL (Shared Task) Don Tuggener, Manfred Klenner, Gerold Schneider, Simon Clematide, Fabio Rinaldi
2011	J	`jnl`	Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2011	J	`jnl`	BioCreative III interactive task: an overview. BMC Bioinform. Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu
2011	J	`jnl`	Detection of interaction articles and experimental methods in biomedical literature. BMC Bioinform. Gerold Schneider, Simon Clematide, Fabio Rinaldi
2011	—	`ed.`	Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, Cambridge, United Kingdom, October, 2010 Semantic Mining in Biomedicine Nigel Collier, Udo Hahn, Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo
2011	—	`conf`	Ranking Interactions for a Curation Task. ICMLA (2) Simon Clematide, Fabio Rinaldi
2011	J	`jnl`	Terminological resources for text mining over biomedical scientific literature. Artif. Intell. Medicine Fabio Rinaldi, Kaarel Kaljurand, Rune Sætre
2011	J	`jnl`	The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis M. Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu
2011	J	`jnl`	The gene normalization task in BioCreative III. BMC Bioinform. Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur
2011	J	`jnl`	Towards mature use of semantic resources for biomedical analyses. J. Biomed. Semant. Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Sampo Pyysalo, Nigel Collier, Udo Hahn
2010	—	`conf`	Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2010	J	`jnl`	OntoGene in BioCreative II.5. IEEE ACM Trans. Comput. Biol. Bioinform. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Simon Clematide, Thérèse Vachon, Martin Romacker
2009	C	`conf`	Detecting Protein-Protein Interactions in Biomedical Texts Using a Parser and Linguistic Resources. CICLing Gerold Schneider, Kaarel Kaljurand, Fabio Rinaldi
2009	J	`jnl`	Detecting and Grounding Terms in Biomedical Literature. Res. Comput. Sci. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Thomas Kappeler
2009	—	`conf`	Support tools for literature-based information access in molecular biology. IUCS Fabio Rinaldi, Dietrich Rebholz-Schuhmann
2009	—	`conf`	TX Task: Automatic Detection of Focus Organisms in Biomedical Publications. BioNLP@HLT-NAACL Thomas Kappeler, Kaarel Kaljurand, Fabio Rinaldi
2009	—	`conf`	UZurich in the BioNLP 2009 Shared Task. BioNLP@HLT-NAACL (Shared Task) Kaarel Kaljurand, Gerold Schneider, Fabio Rinaldi
2009	B	`conf`	Using Existing Biomedical Resources to Detect and Ground Terms in Biomedical Literature. AIME Kaarel Kaljurand, Fabio Rinaldi, Thomas Kappeler, Gerold Schneider
2008	B	`conf`	Dependency-Based Relation Mining for Biomedical Literature. LREC Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess
2007	J	`jnl`	Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach. Artif. Intell. Medicine Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Ourania Konstanti, Andreas Persidis
2007	—	`conf`	Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task. EMNLP-CoNLL Gerold Schneider, Kaarel Kaljurand, Fabio Rinaldi, Tobias Kuhn
2006	—	`conf`	An Environment for Relation Mining over Richly Annotated Corpora: the case of GENIA. SMBM Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Martin Romacker
2006	J	`jnl`	An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinform. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Martin Romacker
2006	A	`conf`	Tools for Text Mining over Biomedical Literature. ECAI Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess
2005	J	`jnl`	A symbolic approach to automatic multiword term structuring. Comput. Speech Lang. Eric SanJuan, James Dowdall, Fidelia Ibekwe-Sanjuan, Fabio Rinaldi
2005	—	`conf`	Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines. Reasoning Web Norbert E. Fuchs, Stefan Höfler, Kaarel Kaljurand, Fabio Rinaldi, Gerold Schneider
2005	—	`conf`	Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing. NLUCS Gerold Schneider, Fabio Rinaldi, Kaarel Kaljurand, Michael Hess
2005	B	`conf`	Relation Mining over a Corpus of Scientific Literature. AIME Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Andreas Persidis, Ourania Konstanti
2004	—	`conf`	Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES. RIAO Myra Spiliopoulou, Roland M. Müller, Marko Brunzel, Fabio Rinaldi, Michael Hess, James Dowdall, William J. Black, Babis Theodoulidis, John McNaught, Luc Bernard, Gian Piero Zarri, Giorgos Orphanos, Maghi King, Andreas Persidis
2004	B	`conf`	Exploiting Language Resources for Semantic Web Annotations. LREC Kaarel Kaljurand, Fabio Rinaldi, James Dowdall, Michael Hess
2004	—	`conf`	Exploiting Technical Terminology for Knowledge Management. LSTKM@EKAW Fabio Rinaldi, Elia Yuste
2004	—	`conf`	Question Answering in Terminology-Rich Technical Domains. New Directions in Question Answering Fabio Rinaldi, Michael Hess, James Dowdall, Diego Mollá Aliod, Rolf Schwitter
2004	B	`conf`	Steps Towards Semantically Annotated Language Resources. LREC Manfred Klenner, Fabio Rinaldi, Michael Hess
2004	B	`conf`	The Role of MultiWord Terminology in Knowledge Management. LREC James Dowdall, Will Lowe, Jeremy Ellman, Fabio Rinaldi, Michael Hess
2003	—	`conf`	Breaking the Deadlock. OTM Fabio Rinaldi, Kaarel Kaljurand, James Dowdall, Michael Hess
2003	—	`conf`	Exploiting Paraphrases in a Question Answering System. IWP@ACL Fabio Rinaldi, James Dowdall, Kaarel Kaljurand, Michael Hess, Diego Mollá Aliod
2003	J	`jnl`	ExtrAns: Extracting Answers from Technical Texts. IEEE Intell. Syst. Diego Mollá Aliod, Rolf Schwitter, Fabio Rinaldi, James Dowdall, Michael Hess
2003	J	`jnl`	Extracción automática de respuestas para documentación técnica. Proces. del Leng. Natural Fabio Rinaldi, Elia Yuste
2003	B	`conf`	Knowledge-Based Question Answering. KES Fabio Rinaldi, James Dowdall, Michael Hess, Diego Mollá Aliod, Rolf Schwitter, Kaarel Kaljurand
2003	—	`conf`	Parmenides: An Opportunity for ISO TC37 SC4? ACL (Linguistic Annotation) Fabio Rinaldi, James Dowdall, Michael Hess, Kaarel Kaljurand, Andreas Persidis
2002	C	`conf`	Answer Extraction in Technical Domains. CICLing Fabio Rinaldi, Michael Hess, Diego Mollá Aliod, Rolf Schwitter, James Dowdall, Gerold Schneider, Rachel Fournier
2002	B	`conf`	Technical Terminology as a Critical Resource. LREC James Dowdall, Michael Hess, Neeme Kahusk, Kaarel Kaljurand, Mare Koit, Fabio Rinaldi, Kadri Vider
2002	A	`conf`	Towards Answer Extraction: An application to Technical Domains. ECAI Fabio Rinaldi, James Dowdall, Michael Hess, Diego Mollá Aliod, Rolf Schwitter
2000	A	`conf`	Flexible Text Classification for Financial Applications: The Facile System. ECAI Fabio Ciravegna, Alberto Lavelli, Nadia Mana, Johannes Matiasek, Luca Gilardoni, Silvia Mazza, Massimo Ferraro, William J. Black, Fabio Rinaldi, David Mowatt
1999	C	`conf`	CONCERTO, An Environment for the 'Intelligent' Indexing, Querying and Retrieval of Digital Documents. ISMIS Gian Piero Zarri, Elisa Bertino, Bill Black, Andrew Brasher, Barbara Catania, Diana Deavin, Luigi Di Pace, Floriana Esposito, Pietro Leo, John McNaught, Andreas Persidis, Fabio Rinaldi, Giovanni Semeraro
1999	—	`conf`	CONCERTO, Conceptual Indexing, Querying and Retrieval of Digital Documents. ICMCS, Vol. 2 Elisa Bertino, Bill Black, Andrew Brasher, Vito Candela, Barbara Catania, Diana Deavin, Luigi Di Pace, Floriana Esposito, Pietro Leo, John McNaught, Andreas Persidis, Fabio Rinaldi, Giovanni Semeraro, Gian Piero Zarri
1999	A*	`conf`	FACILE: Classifying Texts Integrating Pattern Matching and Information Extraction. IJCAI Fabio Ciravegna, Alberto Lavelli, Luca Gilardoni, Johannes Matiasek, Nadia Mana, Silvia Mazza, Massimo Ferraro, William J. Black, Fabio Rinaldi, David Mowatt
1998	Misc	`conf`	FACILE: Description of the NE System Used for MUC-7. MUC William J. Black, Fabio Rinaldi, David Mowatt
1997	—	`conf`	Integrated text categorisation and Information extraction using pattern matching and linguistic processing. RIAO William J. Black, Luca Gilardoni, Fabio Rinaldi, Ralf Dressel