Fabio Pardi

21 papers Misc 1Journal 19
YearRankTypeTitle / Venue / Authors
2025 J jnl
Algorithms to reconstruct past indels: The deletion-only parsimony problem.
PLoS Comput. Biol.
Jordan Moutet, Eric Rivals, Fabio Pardi
2023 J jnl
Computing Phylo-$k$k-Mers.
IEEE ACM Trans. Comput. Biol. Bioinform.
Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi
2023 J jnl
EPIK: precise and scalable evolutionary placement with informative
Bioinform.
Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals
2021 J jnl
A phylogenetic approach for weighting genetic sequences.
BMC Bioinform.
Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman
2021 J jnl
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
PLoS Comput. Biol.
Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
2021 J jnl
PEWO: a collection of workflows to benchmark phylogenetic placement.
Bioinform.
Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals
2021 J jnl
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers.
Bioinform.
Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi
2020 J jnl
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent.
CoRR
Jakub Truszkowski, Céline Scornavacca, Fabio Pardi
2019 J jnl
Cutting an alignment with Ockham's razor.
CoRR
Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca
2019 J jnl
Rapid alignment-free phylogenetic identification of metagenomic sequences.
Bioinform.
Benjamin Linard, Krister M. Swenson, Fabio Pardi
2017 J jnl
Finding the most parsimonious or likely tree in a network with respect to an alignment.
CoRR
Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel
2017 J jnl
Rearrangement moves on rooted phylogenetic networks.
PLoS Comput. Biol.
Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca
2016 — ch.
Distance-Based Phylogeny Reconstruction: Safety and Edge Radius.
Encyclopedia of Algorithms
Olivier Gascuel, Fabio Pardi, Jakub Truszkowski
2016 J jnl
Do branch lengths help to locate a tree in a phylogenetic network?
CoRR
Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca
2016 J jnl
Fast and accurate branch lengths estimation for phylogenomic trees.
BMC Bioinform.
Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi
2015 J jnl
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable.
PLoS Comput. Biol.
Fabio Pardi, Céline Scornavacca
2010 J jnl
Approximate Maximum Parsimony and Ancestral Maximum Likelihood.
IEEE ACM Trans. Comput. Biol. Bioinform.
Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport
2009 J jnl
Budgeted Phylogenetic Diversity on Circular Split Systems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler
2008 J jnl
Determination and validation of principal gene products.
Bioinform.
Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia
2005 J jnl
GSMA: software implementation of the genome search meta-analysis method.
Bioinform.
Fabio Pardi, Douglas F. Levinson, Cathryn M. Lewis
2002 Misc conf
Category Similarity as a Predictor for SVM Learning Performance.
FLAIRS
Fabio Pardi