Fabio Cunial

37 papers A 1B 8C 5Journal 17Unranked 2
YearRankTypeTitle / Venue / Authors
2023 — book
Genome-Scale Algorithm Design: Bioinformatics in the Era of High-Throughput Sequencing (2nd edition).
Veli Mäkinen, Djamal Belazzougui, Fabio Cunial, Alexandru I. Tomescu
2022 J jnl
Fast and compact matching statistics analytics.
Bioinform.
Fabio Cunial, Olgert Denas, Djamal Belazzougui
2020 J jnl
Linear-time String Indexing and Analysis in Small Space.
ACM Trans. Algorithms
Djamal Belazzougui, Fabio Cunial, Juha Kärkkäinen, Veli Mäkinen
2020 C conf
Smaller Fully-Functional Bidirectional BWT Indexes.
SPIRE
Djamal Belazzougui, Fabio Cunial
2019 J jnl
A framework for space-efficient variable-order Markov models.
Bioinform.
Fabio Cunial, Jarno Alanko, Djamal Belazzougui
2019 B conf
Fully-Functional Bidirectional Burrows-Wheeler Indexes and Infinite-Order De Bruijn Graphs.
CPM
Djamal Belazzougui, Fabio Cunial
2019 J jnl
Fully-functional bidirectional Burrows-Wheeler indexes.
CoRR
Fabio Cunial, Djamal Belazzougui
2018 B conf
Fast matching statistics in small space.
SEA
Djamal Belazzougui, Fabio Cunial, Olgert Denas
2017 J jnl
A Framework for Space-Efficient String Kernels.
Algorithmica
Djamal Belazzougui, Fabio Cunial
2017 J jnl
A framework for space-efficient read clustering in metagenomic samples.
BMC Bioinform.
Jarno Alanko, Fabio Cunial, Djamal Belazzougui, Veli Mäkinen
2017 C conf
Fast Label Extraction in the CDAWG.
SPIRE
Djamal Belazzougui, Fabio Cunial
2017 J jnl
Fast Label Extraction in the CDAWG.
CoRR
Djamal Belazzougui, Fabio Cunial
2017 C conf
Flexible Indexing of Repetitive Collections.
CiE
Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot
2017 B conf
Representing the Suffix Tree with the CDAWG.
CPM
Djamal Belazzougui, Fabio Cunial
2017 J jnl
Representing the suffix tree with the CDAWG.
CoRR
Djamal Belazzougui, Fabio Cunial
2016 J jnl
Linear-time string indexing and analysis in small space.
CoRR
Djamal Belazzougui, Fabio Cunial, Juha Kärkkäinen, Veli Mäkinen
2016 J jnl
Practical combinations of repetition-aware data structures.
CoRR
Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot
2016 — ch.
Suffix Trees and Arrays.
Encyclopedia of Algorithms
Alberto Apostolico, Fabio Cunial
2015 B conf
A Framework for Space-Efficient String Kernels.
CPM
Djamal Belazzougui, Fabio Cunial
2015 J jnl
A framework for space-efficient string kernels.
CoRR
Djamal Belazzougui, Fabio Cunial
2015 B conf
Composite Repetition-Aware Data Structures.
CPM
Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot
2015 J jnl
Composite repetition-aware data structures.
CoRR
Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot
2015 — book
Genome-Scale Algorithm Design: Biological Sequence Analysis in the Era of High-Throughput Sequencing.
Veli Mäkinen, Djamal Belazzougui, Fabio Cunial, Alexandru I. Tomescu
2015 J jnl
LAF: Logic Alignment Free and its application to bacterial genomes classification.
BioData Min.
Emanuel Weitschek, Fabio Cunial, Giovanni Felici
2015 C conf
Space-Efficient Detection of Unusual Words.
SPIRE
Djamal Belazzougui, Fabio Cunial
2015 J jnl
Space-efficient detection of unusual words.
CoRR
Djamal Belazzougui, Fabio Cunial
2014 — conf
Classifying Bacterial Genomes with Compact Logic Formulas on k-Mer Frequencies.
DEXA Workshops
Emanuel Weitschek, Fabio Cunial, Giovanni Felici
2014 C conf
Indexed Matching Statistics and Shortest Unique Substrings.
SPIRE
Djamal Belazzougui, Fabio Cunial
2013 A conf
Versatile Succinct Representations of the Bidirectional Burrows-Wheeler Transform.
ESA
Djamal Belazzougui, Fabio Cunial, Juha Kärkkäinen, Veli Mäkinen
2012 — —
Analysis of the subsequence composition of biosequences.
Fabio Cunial
2012 — conf
Faster Variance Computation for Patterns with Gaps.
MedAlg
Fabio Cunial
2012 J jnl
Phylogeny Construction with Rigid Gapped Motifs.
J. Comput. Biol.
Fabio Cunial, Alberto Apostolico
2011 B conf
Sequence Similarity by Gapped LZW.
DCC
Alberto Apostolico, Fabio Cunial
2010 J jnl
The Subsequence Composition of Polypeptides.
J. Comput. Biol.
Alberto Apostolico, Fabio Cunial
2009 B conf
Probing the Randomness of Proteins by Their Subsequence Composition.
DCC
Alberto Apostolico, Fabio Cunial
2009 J jnl
The subsequence composition of a string.
Theor. Comput. Sci.
Alberto Apostolico, Fabio Cunial
2008 B conf
Table Compression by Record Intersections.
DCC
Alberto Apostolico, Fabio Cunial, Vineith Kaul