Fabian Neuhaus

68 papers B 1C 6Misc 1Journal 33Unranked 17
YearRankTypeTitle / Venue / Authors
2026 J jnl
Detection of alternative splicing: deep sequencing or deep learning?
Briefings Bioinform.
Lena Maria Hackl, Fabian Neuhaus, Sabine Ameling, Uwe Völker, Jan Baumbach, Olga Tsoy
2025 J jnl
Box embeddings for extending ontologies: a data-driven and interpretable approach.
J. Cheminformatics
Adel Memariani, Martin Glauer, Simon Flügel, Fabian Neuhaus, Janna Hastings, Till Mossakowski
2025 — conf
Chebifier 2: An Ensemble for Chemistry.
SEMANTiCS (Posters, Demos, Workshops & Tutorials)
Simon Flügel, Martin Glauer, Janna Hastings, Till Mossakowski, Christopher J. Mungall, Charlotte Tumescheit, Fabian Neuhaus
2025 J jnl
ChemLog: Making MSOL Viable for Ontological Classification and Learning.
CoRR
Simon Flügel, Martin Glauer, Till Mossakowski, Fabian Neuhaus
2025 — conf
Dispositions and Roles of Generically Dependent Entities.
JOWO
Fabian Neuhaus
2025 J jnl
Dispositions and Roles of Generically Dependent Entities.
CoRR
Fabian Neuhaus
2025 C conf
Modelling Model Uncertainties Ontologically.
FOIS
Mirjam Stappel, Till Mossakowski, Fabian Neuhaus, Sarah Berendes
2025 C conf
Semantic Dependency in Ontologies.
FOIS
Fabian Neuhaus, Martin Glauer, Till Mossakowski, Lilly Gerlach, Colin Heidfeld
2025 J jnl
The Diagrammatic Image Schema Language (DISL).
Spatial Cogn. Comput.
Maria M. Hedblom, Fabian Neuhaus, Till Mossakowski
2025 J jnl
The Mercurial Top-Level Ontology of Large Language Models.
Appl. Ontology
Nele Köhler, Fabian Neuhaus
2025 J jnl
Transcription factor prediction using protein 3D secondary structures.
Bioinform.
Jeanine Liebold, Fabian Neuhaus, Janina Geiser, Stefan Kurtz, Jan Baumbach, Khalique Newaz
2024 — conf
A Fuzzy Loss for Ontology Classification.
NeSy (1)
Simon Flügel, Martin Glauer, Till Mossakowski, Fabian Neuhaus
2024 J jnl
A semantic loss for ontology classification.
CoRR
Simon Flügel, Martin Glauer, Till Mossakowski, Fabian Neuhaus
2024 — conf
CEAR: Automatic construction of a knowledge graph of chemical entities and roles from scientific literature.
JOWO
Stefan Langer, Fabian Neuhaus, Andreas Nürnberger
2024 J jnl
CEAR: Automatic construction of a knowledge graph of chemical entities and roles from scientific literature.
CoRR
Stefan Langer, Fabian Neuhaus, Andreas Nürnberger
2024 J jnl
Interpretable ontology extension in chemistry.
Semantic Web
Martin Glauer, Adel Memariani, Fabian Neuhaus, Till Mossakowski, Janna Hastings
2024 C conf
Representing Energy in the Midlevel Energy Ontology (MENO).
FOIS
Mirjam Stappel, Fabian Neuhaus
2024 J jnl
The Mercurial Top-Level Ontology of Large Language Models.
CoRR
Nele Köhler, Fabian Neuhaus
2023 — ch.
Neuro-Symbolic Semantic Learning for Chemistry.
Compendium of Neurosymbolic Artificial Intelligence
Martin Glauer, Till Mossakowski, Fabian Neuhaus, Adel Memariani, Janna Hastings
2023 J jnl
Ontologies in the era of large language models - a perspective.
Appl. Ontology
Fabian Neuhaus
2023 Misc conf
Ontology Pre-training for Poison Prediction.
KI
Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
2023 J jnl
Ontology Pre-training for Poison Prediction.
CoRR
Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
2022 J jnl
Ontology Development is Consensus Creation, Not (Merely) Representation.
CoRR
Fabian Neuhaus, Janna Hastings
2022 J jnl
Ontology development is consensus creation, not (merely) representation.
Appl. Ontology
Fabian Neuhaus, Janna Hastings
2022 — ed.
Proceedings of the Joint Ontology Workshops 2022 Episode VIII: The Svear Sommar of Ontology, Jönköping, Sweden, August 15-19, 2022.
JOWO
Tiago Prince Sales, Maria M. Hedblom, He Tan, Guendalina Righetti, Oliver Kutz, Martin Glauer, Janna Hastings, Till Mossakowski, Fabian Neuhaus, Lucía Gómez Álvarez, Rafael Peñaloza, Srdjan Vesic, Claudenir Morais Fonseca, Jona Thai, Stefano Borgo, Damion M. Dooley, Rhiannon Cameron, Lauren E. Chan, Duccio Cavalieri, Robert Warren, Hande Küçük-McGinty, Matthew Lange, Fernanda Forea, Francesco Vitali, Bart Gajderowicz, Daniela Rosu, Aldo Gangemi, Robert Porzel, Daniel Beßler, Mihai Pomarlan, Mohammed Diab, Alberto Olivares Alarcos
2022 — conf
Visualising Image Schemas: A Preliminary Look at the Diagrammatic Image Schema Language (DISL).
ISD
Maria M. Hedblom, Fabian Neuhaus
2022 J jnl
When one Logic is Not Enough: Integrating First-order Annotations in OWL Ontologies.
CoRR
Simon Flügel, Martin Glauer, Fabian Neuhaus, Janna Hastings
2021 J jnl
Automated and Explainable Ontology Extension Based on Deep Learning: A Case Study in the Chemical Domain.
CoRR
Adel Memariani, Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
2021 — conf
Automated and Explainable Ontology Extension based on Deep Learning: A Case Study in the Chemical Domain.
DAO-XAI
Adel Memariani, Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
2021 — conf
FOWL - An OWL to FOL Translator.
JOWO
Simon Flügel, Anna Kleinau, Fabian Neuhaus, Martin Glauer, Janna Hastings
2021 C ed.
Formal Ontology in Information Systems - Proceedings of the Twelfth International Conference, FOIS 2021, Bozen-Bolzano, Italy, September 11-18, 2021
FOIS
Fabian Neuhaus, Boyan Brodaric
2021 J jnl
Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification.
J. Cheminformatics
Janna Hastings, Martin Glauer, Adel Memariani, Fabian Neuhaus, Till Mossakowski
2020 C ed.
Formal Ontology in Information Systems - Proceedings of the 11th International Conference, FOIS 2020, Cancelled / Bozen-Bolzano, Italy, September 14-17, 2020.
FOIS
Boyan Brodaric, Fabian Neuhaus
2020 — conf
Free Description Logic for Ontologists.
JOWO
Fabian Neuhaus, Oliver Kutz, Guendalina Righetti
2019 — conf
Generic Ontology Design Patterns at Work.
JOWO
Bernd Krieg-Brückner, Till Mossakowski, Fabian Neuhaus
2019 J jnl
Generic Ontology Design Patterns at Work.
CoRR
Bernd Krieg-Brückner, Till Mossakowski, Fabian Neuhaus
2018 — ch.
Conceptual Blending in DOL: Evaluating Consistency and Conflict Resolution.
Concept Invention
Mihai Codescu, Fabian Neuhaus, Till Mossakowski, Oliver Kutz, Danny de Jesús Gómez-Ramírez
2018 — ch.
Image Schemas and Concept Invention.
Concept Invention
Maria M. Hedblom, Oliver Kutz, Fabian Neuhaus
2018 J jnl
Modular Semantics and Characteristics for Bipolar Weighted Argumentation Graphs.
CoRR
Till Mossakowski, Fabian Neuhaus
2018 — ed.
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, Bozen-Bolzano, Italy, September 21-23, 2017.
JOWO
Stefano Borgo, Oliver Kutz, Frank Loebe, Fabian Neuhaus, Kemo Adrian, Mihailo Antovic, Valerio Basile, Martin Boeker, Diego Calvanese, Tommaso Caselli, Giorgio Colombo, Roberto Confalonieri, Laura Daniele, Jérôme Euzenat, Antony Galton, Dagmar Gromann, Maria M. Hedblom, Heinrich Herre, Inge Hinterwaldner, Andrea Janes, Ludger Jansen, Kris Krois, Antonio Lieto, Claudio Masolo, Rafael Peñaloza, Daniele Porello, Daniele Paolo Radicioni, Emilio M. Sanfilippo, Daniel Schober, Rossella Stufano, Amanda Vizedom
2018 J jnl
What is an Ontology?
CoRR
Fabian Neuhaus
2017 — conf
Between Contact and Support: Introducing a Logic for Image Schemas and Directed Movement.
AI*IA
Maria M. Hedblom, Oliver Kutz, Till Mossakowski, Fabian Neuhaus
2017 — conf
On the Definition of 'Ontology'.
JOWO
Fabian Neuhaus
2017 J jnl
Ontohub: A semantic repository engine for heterogeneous ontologies.
Appl. Ontology
Mihai Codescu, Eugen Kuksa, Oliver Kutz, Till Mossakowski, Fabian Neuhaus
2017 B conf
Web-Retrieval Supported Argument Space Exploration.
CHIIR
Marcus Thiel, Philipp Ludwig, Till Mossakowski, Fabian Neuhaus, Andreas Nürnberger
2016 J jnl
Bipolar Weighted Argumentation Graphs.
CoRR
Till Mossakowski, Fabian Neuhaus
2016 J jnl
Image schemas in computational conceptual blending.
Cogn. Syst. Res.
Maria M. Hedblom, Oliver Kutz, Fabian Neuhaus
2016 J jnl
Ontohub: A semantic repository for heterogeneous ontologies.
CoRR
Mihai Codescu, Eugen Kuksa, Oliver Kutz, Till Mossakowski, Fabian Neuhaus
2016 — conf
Ontology Patterns with DOWL: The Case of Blending.
Description Logics
Oliver Kutz, Fabian Neuhaus, Maria M. Hedblom, Till Mossakowski, Mihai Codescu
2016 — ed.
Proceedings of the Joint Ontology Workshops 2016 Episode 2: The French Summer of Ontology co-located with the 9th International Conference on Formal Ontology in Information Systems (FOIS 2016), Annecy, France, July 6-9, 2016.
JOWO@FOIS
Oliver Kutz, Sergio de Cesare, Maria M. Hedblom, Tarek Richard Besold, Tony Veale, Frederik Gailly, Giancarlo Guizzardi, Mark Lycett, Chris Partridge, Oscar Pastor, Michael Grüninger, Fabian Neuhaus, Till Mossakowski, Stefano Borgo, Loris Bozzato, Chiara Del Vescovo, Martin Homola, Frank Loebe, Adrien Barton, Jean-Rémi Bourguet
2015 J jnl
Choosing the Right Path: Image Schema Theory as a Foundation for Concept Invention.
J. Artif. Gen. Intell.
Maria M. Hedblom, Oliver Kutz, Fabian Neuhaus
2014 C conf
Blending in the Hub.
ICCC
Oliver Kutz, Fabian Neuhaus, Till Mossakowski, Mihai Codescu
2014 — conf
On the Cognitive and Logical Role of Image Schemas in Computational Conceptual Blending.
AIC
Maria M. Hedblom, Oliver Kutz, Fabian Neuhaus
2013 J jnl
Canonicalization in the PrIKL Reasoner.
J. Softw.
Don Libes, Antoine Gerardin, Severin Tixier, Fabian Neuhaus
2013 — conf
RECON - A Controlled English for Business Rules.
RuleML (2)
Edward Barkmeyer, Fabian Neuhaus
2013 J jnl
Towards ontology evaluation across the life cycleThe Ontology Summit 2013.
Appl. Ontology
Fabian Neuhaus, Amanda Vizedom, Kenneth Baclawski, Mike Bennett, Mike Dean, Michael Denny, Michael Grüninger, Ali Hashemi, Terry Longstreth, Leo Obrst, Steve Ray, Ram D. Sriram, Todd Schneider, Marcela Vegetti, Matthew West, Peter Yim
2012 J jnl
A strategy for building neuroanatomy ontologies.
Bioinform.
David Osumi-Sutherland, Simon Reeve, Christopher J. Mungall, Fabian Neuhaus, Alan Ruttenberg, Gregory S. X. E. Jefferis, J. Douglas Armstrong
2012 J jnl
A strategy for building neuroanatomy ontologies.
Bioinform.
David Osumi-Sutherland, Simon Reeve, Christopher J. Mungall, Fabian Neuhaus, Alan Ruttenberg, Gregory S. X. E. Jefferis, J. Douglas Armstrong
2012 J jnl
Common Logic and the Horatio problem.
Appl. Ontology
Fabian Neuhaus, Patrick J. Hayes
2012 J jnl
What's in an 'is about' link? Chemical diagrams and the Information Artifact Ontology
CoRR
Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck
2011 J jnl
Creating the ontologists of the future.
Appl. Ontology
Fabian Neuhaus, Elizabeth Florescu, Antony Galton, Michael Grüninger, Nicola Guarino, Leo Obrst, Arturo Sanchez, Amanda Vizedom, Peter Yim, Barry Smith
2011 — conf
Speech Acts and Tokens for Access Control and Provenance Tracking.
STIDS
Fabian Neuhaus, Bill Andersen
2011 — conf
What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology.
ICBO
Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck
2009 — ch.
Use of Semantic Mediation in Manufacturing Supply Chains.
Cases on Semantic Interoperability for Information Systems Integration
Peter Denno, Edward J. Barkmeyer, Fabian Neuhaus
2008 — ch.
CARO - The Common Anatomy Reference Ontology.
Anatomy Ontologies for Bioinformatics
Melissa A. Haendel, Fabian Neuhaus, David Osumi-Sutherland, Paula M. Mabee, José L. V. Mejino Jr., Chris Mungall, Barry Smith
2008 — ch.
Modeling Principles and Methodologies - Spatial Representation and Reasoning.
Anatomy Ontologies for Bioinformatics
Thomas Bittner, Maureen Donnelly, Louis J. Goldberg, Fabian Neuhaus
2008 — ch.
Modelling Principles and Methodologies - Relations in Anatomical Ontologies.
Anatomy Ontologies for Bioinformatics
Fabian Neuhaus, Barry Smith
2008 — conf
Ontology-based Technologies - Technology Transfer from Bioinformatics?
OIC
Fabian Neuhaus