Fa Zhang

188 papers A* 5A 3B 13C 14Misc 4Journal 81Unranked 64
YearRankTypeTitle / Venue / Authors
2026 A* conf
Cyto-SSL: A Self-Supervised Pretraining Framework for Cytology Foundation Model.
AAAI
Yiming Zhang, Rui Yan, Xiaohua Wan, Yifan Zhao, Shuang Feng, Zhetao Xu, Ying Wang, Fa Zhang, Bin Hu
2026 J jnl
Point cloud deformation modeling for particle selection following cryo-EM 2D classification.
BMC Bioinform.
Xuan Wang, Zhengao Mo, Fuwei Li, Fa Zhang, Xiaohua Wan
2026 A* conf
ST-LLM: Spatial Transcriptomics Embedding with Large Language Models.
AAAI
Zhetao Xu, Xiaohua Wan, Le Li, Shuang Feng, Yiming Zhang, Fa Zhang, Bin Hu
2025 J jnl
Central Feature Network Enables Accurate Detection of Both Small and Large Particles in Cryo-Electron Tomography.
J. Comput. Sci. Technol.
Yaoyu Wang, Xiaohua Wan, Cheng Chen, Fa Zhang, Xuefeng Cui
2025 — conf
CoDiST: Combining Unimodal Contrastive Denoising and Crossmodal Disentanglement for Spatial Transcriptomics.
BIBM
Xianglong Meng, Kai Hu, Xuefeng Cui, Fa Zhang
2025 J jnl
CryoAlign2: efficient global and local Cryo-EM map retrieval based on parallel-accelerated local spatial structural features.
Bioinform.
Zhe Liu, Bintao He, Tian Zhang, Chenjie Feng, Fa Zhang, Zhongjun Yang, Renmin Han
2025 J jnl
Enhancing Colorectal Lesion Segmentation Through Internal Feature Extraction and Computational Modeling Insights.
IEEE Trans. Comput. Soc. Syst.
Xiaohua Wan, Yulong Hu, Dehui Qiu, Rui Li, Liguo Deng, Tinghui Ye, Shengtao Zhu, Xiujing Sun, Qian Zhang, Weilong Yao, Fa Zhang, Kun Wang
2025 J jnl
GaussianEM: Model compositional and conformational heterogeneity using 3D Gaussians.
CoRR
Bintao He, Yiran Cheng, Hongjia Li, Xiang Gao, Xin Gao, Fa Zhang, Renmin Han
2025 J jnl
Harmonic Wavelet Neural Network for Discovering Neuropathological Propagation Patterns in Alzheimer's Disease.
IEEE J. Biomed. Health Informatics
Hongmin Cai, Ranran Deng, Defu Yang, Fa Zhang, Guorong Wu, Jiazhou Chen
2025 J jnl
Learning Uniform Latent Representation via Alternating Adversarial Network for Multi-View Clustering.
IEEE Trans. Emerg. Top. Comput. Intell.
Yue Zhang, Weitian Huang, Xiaoxue Zhang, Sirui Yang, Fa Zhang, Xin Gao, Hongmin Cai
2025 — conf
MambaST: Hexagonal State Space Modeling for Spatial Domain Identification.
ISBRA (1)
Xianglong Meng, Kai Hu, Xuefeng Cui, Fa Zhang
2025 J jnl
Particle Restoration: A Novel Image Processing Framework for Improving Real Cryo-EM Image Quality in Single Particle Analysis.
IEEE Trans. Comput. Biol. Bioinform.
Bin Hu, Dongxu Zhang, Shiqi Liu, Xiao-Liang Xie, Xiao-Hu Zhou, Hong-Jia Li, Qing-Bing Zheng, Fa Zhang, Zeng-Guang Hou, Ning-Shao Xia
2025 J jnl
Similarity-guided multi-view functional brain network fusion.
Medical Image Anal.
Zhigang Li, Jingyu Liu, Mengkai Sun, Fa Zhang, Bin Hu, Qunxi Dong
2025 J jnl
TiltRec: an ultra-fast and open-source toolkit for cryo-electron tomographic reconstruction.
Bioinform.
Yanxin Jiao, Hongjia Li, Yang Xue, Guoliang Yang, Lei Qi, Fa Zhang, Dawei Zang, Renmin Han
2025 J jnl
Toward a New Fusion Paradigm: Integrating Specificity and Heterogeneity in Multimodal Biomedicine Data.
IEEE Trans. Comput. Soc. Syst.
Fa Zhang, Shuang Feng, Xiaohua Wan, Bin Hu
2025 J jnl
UPicker: a semi-supervised particle picking transformer method for cryo-EM micrographs.
Briefings Bioinform.
Chi Zhang, Yiran Cheng, Kaiwen Feng, Fa Zhang, Renmin Han, Jieqing Feng
2024 J jnl
A Disentangled Representation-Based Multimodal Fusion Framework Integrating Pathomics and Radiomics for KRAS Mutation Detection in Colorectal Cancer.
Big Data Min. Anal.
Zhilong Lv, Rui Yan, Yuexiao Lin, Lin Gao, Fa Zhang, Ying Wang
2024 — conf
Advancing Template-Based Flexible Docking of P450-Heme Complexes via JAX MD.
BIBM
Rongxu Guo, Cheng Chen, Jiaheng Sang, Guishan Cui, Fa Zhang, Xuefeng Cui, Shengying Li
2024 — conf
Central Feature Network Enables Accurate Detection of Both Small and Large Particles in Cryo-Electron Tomography.
ISBRA (1)
Yaoyu Wang, Xiaohua Wan, Cheng Chen, Fa Zhang, Xuefeng Cui
2024 — conf
Com-DNB: A novel method for identifying critical states of complex biological processes and its parallelization.
BCB
Letian Wang, Yanbing Zhu, Xiaohua Wan, Yiming Zhang, Shuang Feng, Chang Li, Fa Zhang, Bin Hu
2024 J jnl
Editorial: Special Section on Challenges and Opportunities in Biomedical Big Data Analysis: From Large Language Models to Clinical Applications.
Big Data Min. Anal.
Yanjie Wei, Huiling Zhang, Zhipeng Cai, Fa Zhang, Zhaolei Zhang
2024 J jnl
FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval.
Genom. Proteom. Bioinform.
Junhai Qi, Chenjie Feng, Yulin Shi, Jianyi Yang, Fa Zhang, Guojun Li, Renmin Han
2024 J jnl
Guest Editorial Computational Mathematics Modeling in Cancer Analysis.
IEEE J. Biomed. Health Informatics
Wenjian Qin, Tianming Liu, Fa Zhang
2024 — conf
IG-GRD: A Model Based on Disentangled Graph Representation Learning for Imaging Genetic Data Fusion.
ICIC (2)
Shuang Feng, Letian Wang, Chang Li, Xiaohua Wan, Fa Zhang, Bin Hu
2024 J jnl
Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining.
J. Comput. Biol.
Zhidong Yang, Hongjia Li, Dawei Zang, Renmin Han, Fa Zhang
2024 — conf
Innovative 3D CTF Correction Techniques for Cryo-ET of Individual Particles.
BIBM
Xuan Wang, Shiwei Liu, Xinsheng Wang, Xiaohua Wan, Fa Zhang
2024 J jnl
MSTCA-Net: A Novel Impervious Surface Extraction Method Based on a Multistage Transformer.
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens.
Xiaohua Wan, Wenjing Zhang, Dehui Qiu, Sijia Li, Fa Zhang, Zhongchang Sun, Bin Hu
2024 J jnl
Realize Generative Yet Complete Latent Representation for Incomplete Multi-View Learning.
IEEE Trans. Pattern Anal. Mach. Intell.
Hongmin Cai, Weitian Huang, Sirui Yang, Siqi Ding, Yue Zhang, Bin Hu, Fa Zhang, Yiu-ming Cheung
2024 — conf
SelfAlign: Achieving Subtomogram Alignment with Self-Supervised Deep Learning.
BIBM
Xuan Wang, Haofan Cao, Xinsheng Wang, Xiaohua Wan, Fa Zhang
2024 A* conf
Serial Section Microscopy Image Inpainting Guided by Axial Optical Flow.
ACM Multimedia
Yiran Cheng, Bintao He, Fa Zhang, Renmin Han
2024 J jnl
Sparse and Hierarchical Transformer for Survival Analysis on Whole Slide Images.
IEEE J. Biomed. Health Informatics
Rui Yan, Zhilong Lv, Zhidong Yang, Senlin Lin, Chun-Hou Zheng, Fa Zhang
2023 C conf
A Novel Impervious Surface Extraction Method Based on Transformer.
IGARSS
Wenjing Zhang, Dehui Qiu, Xiaohua Wan, Fa Zhang, Huimei Yuan
2023 — conf
A Tongue Feature Extraction Method Based on a Sublingual Vein Segmentation.
BIBM
Yulong Hu, Dehui Qiu, Xiaohua Wan, Juan Zhang, Xiaotong Wang, Fa Zhang, Bin Hu
2023 J jnl
A novel tongue feature extraction method on mobile devices.
Biomed. Signal Process. Control.
Dehui Qiu, Xinyue Zhang, Xiaohua Wan, Jiacheng Li, Ziheng Xu, Senlin Lin, Fa Zhang, Xuekun Song, Rui Zhang, Yulong Chen, Yuling Zheng
2023 J jnl
A strategy combining denoising and cryo-EM single particle analysis.
Briefings Bioinform.
Hui Zhang, Hongjia Li, Fa Zhang, Ping Zhu
2023 J jnl
Cooperation of local features and global representations by a dual-branch network for transcription factor binding sites prediction.
Briefings Bioinform.
Yutong Yu, Pengju Ding, Hongli Gao, Guozhu Liu, Fa Zhang, Bin Yu
2023 J jnl
CryoAlign: feature-based method for global and local 3D alignment of EM density maps.
CoRR
Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han
2023 — conf
GPU Optimization of Biological Macromolecule Multi-tilt Electron Tomography Reconstruction Algorithm.
ICIC (3)
Zi-Ang Fu, Xiaohua Wan, Fa Zhang
2023 — conf
Integrative Drug Discovery Platform: A Modular Approach for Efficient and Automated Virtual Screening.
BIBM
Tianci Li, Lulu Xie, Zhonghai Zhang, Xu Li, Bo Duan, Gang Niu, Shiwei Sun, Fa Zhang, Runting Zhang, Guangming Tan, Chunming Zhang
2023 — conf
SaID: Simulation-Aware Image Denoising Pre-trained Model for Cryo-EM Micrographs.
ISBRA
Zhidong Yang, Hongjia Li, Dawei Zang, Renmin Han, Fa Zhang
2023 J jnl
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhilong Lv, Yuexiao Lin, Rui Yan, Ying Wang, Fa Zhang
2023 — conf
Variational Clustering and Denoising of Spatial Transcriptomics.
BIBM
Cuiyuan Li, Fa Zhang, Kai Hu, Xuefeng Cui
2022 — conf
A Segmentation-aware Synergy Network for Single Particle Recognition in Cryo-EM.
BIBM
Shuo Li, Hongjia Li, Chi Zhang, Fa Zhang, Xiaohua Wan
2022 J jnl
A Transfer Learning-Based Classification Model for Particle Pruning in Cryo-Electron Microscopy.
J. Comput. Biol.
Hongjia Li, Ge Chen, Shan Gao, Jintao Li, Xiaohua Wan, Fa Zhang
2022 C conf
CSAM: A Channel and Spatial Attention Mechanism for Impervious Surface Extraction in Difficult Areas.
IGARSS
Fangyuan Zhao, Xiaohua Wan, Sijia Li, Zhongchang Sun, Wenjing Zhang, Dehui Qiu, Fa Zhang, Xinyu Liu, Guangming Tan
2022 J jnl
Correction of image distortion in large-field ssEM stitching by an unsupervised intermediate-space solving network.
Bioinform.
Bintao He, Yan Zhang, Fa Zhang, Renmin Han
2022 — conf
Hexagonal Convolutional Neural Network for Spatial Transcriptomics Classification.
BIBM
Jing Gao, Fa Zhang, Kai Hu, Xuefeng Cui
2022 — conf
Joint Region-Attention and Multi-scale Transformer for Microsatellite Instability Detection from Whole Slide Images in Gastrointestinal Cancer.
MICCAI (2)
Zhilong Lv, Rui Yan, Yuexiao Lin, Ying Wang, Fa Zhang
2022 J jnl
Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography.
IEEE ACM Trans. Comput. Biol. Bioinform.
Shan Gao, Renmin Han, Xiangrui Zeng, Zhiyong Liu, Min Xu, Fa Zhang
2022 J jnl
Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer.
Bioinform.
Hongjia Li, Hui Zhang, Xiaohua Wan, Zhidong Yang, Chengmin Li, Jintao Li, Renmin Han, Ping Zhu, Fa Zhang
2022 J jnl
Nuclei-Guided Network for Breast Cancer Grading in HE-Stained Pathological Images.
Sensors
Rui Yan, Fei Ren, Jintao Li, Xiaosong Rao, Zhilong Lv, Chunhou Zheng, Fa Zhang
2022 — conf
Predicting Drug-Disease Associations by Self-topological Generalized Matrix Factorization with Neighborhood Constraints.
ICIC (2)
Xiaoguang Li, Qiang Zhang, Zonglan Zuo, Rui Yan, Chunhou Zheng, Fa Zhang
2022 J jnl
SHREC 2021: Classification in cryo-electron tomograms.
CoRR
Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, M. Cristina Trueba, Remco C. Veltkamp, Friedrich Förster, Xiao Wang, Daisuke Kihara, Emmanuel Moebel, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak, Giorgos Papoulias, Stavros Gerolymatos, Evangelia I. Zacharaki, Konstantinos Moustakas, Xiangrui Zeng, Sinuo Liu, Min Xu, Yaoyu Wang, Cheng Chen, Xuefeng Cui, Fa Zhang
2022 — conf
Temporal Correlation Network for Video Polyp Segmentation.
BIBM
Ziheng Xu, Dehui Qiu, Senlin Lin, Xinyue Zhang, Sheng Shi, Shengtao Zhu, Fa Zhang, Xiaohua Wan
2022 J jnl
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms.
Comput. Methods Programs Biomed.
Yu Hao, Xiaohua Wan, Rui Yan, Zhiyong Liu, Jintao Li, Shihua Zhang, Xuefeng Cui, Fa Zhang
2021 B conf
A Deep Reinforcement Learning-based Task Scheduling Algorithm for Energy Efficiency in Data Centers.
ICCCN
Penglei Song, Ce Chi, Kaixuan Ji, Zhiyong Liu, Fa Zhang, Shikui Zhang, Dehui Qiu, Xiaohua Wan
2021 A* conf
A Hybrid Frequency-Spatial Domain Model for Sparse Image Reconstruction in Scanning Transmission Electron Microscopy.
ICCV
Bintao He, Fa Zhang, Huanshui Zhang, Renmin Han
2021 A conf
A Multi-GPU Design for Large Size Cryo-EM 3D Reconstruction.
IPDPS
Zihao Wang, Xiaohua Wan, Zhiyong Liu, Qianshuo Fan, Fa Zhang, Guangming Tan
2021 J jnl
A joint energy efficiency optimization scheme based on marginal cost and workload prediction in data centers.
Sustain. Comput. Informatics Syst.
Kaixuan Ji, Fa Zhang, Ce Chi, Penglei Song, Biyu Zhou, Avinab Marahatta, Zhiyong Liu
2021 — conf
A new meta-heuristic task scheduling algorithm for optimizing energy efficiency in data centers.
ISPA/BDCloud/SocialCom/SustainCom
Shikui Zhang, Ce Chi, Kaixuan Ji, Zhiyong Liu, Fa Zhang, Penglei Song, Huimei Yuan, Dehui Qiu, Xiaohua Wan
2021 J jnl
A novel constrained reconstruction model towards high-resolution subtomogram averaging.
Bioinform.
Renmin Han, Lun Li, Peng Yang, Fa Zhang, Xin Gao
2021 J jnl
Classification-Based and Energy-Efficient Dynamic Task Scheduling Scheme for Virtualized Cloud Data Center.
IEEE Trans. Cloud Comput.
Avinab Marahatta, Sandeep Pirbhulal, Fa Zhang, Reza M. Parizi, Kim-Kwang Raymond Choo, Zhiyong Liu
2021 — conf
Decomposition-and-Fusion Network for HE-Stained Pathological Image Classification.
ICIC (3)
Rui Yan, Jintao Li, S. Kevin Zhou, Zhilong Lv, Xueyuan Zhang, Xiaosong Rao, Chunhou Zheng, Fei Ren, Fa Zhang
2021 J jnl
Improve the Resolution and Parallel Performance of the Three-Dimensional Refine Algorithm in RELION Using CUDA and MPI.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jingrong Zhang, Zihao Wang, Zhiyong Liu, Fa Zhang
2021 J jnl
Improving energy efficiency in colocation data centers for demand response.
Sustain. Comput. Informatics Syst.
Ce Chi, Fa Zhang, Kaixuan Ji, Avinab Marahatta, Zhiyong Liu
2021 — conf
Moment Invariants with Data Augmentation for Tongue Image Segmentation.
BIBM
Senlin Lin, Xuekun Song, Ziheng Xu, Xinyue Zhang, Yingqing Lin, Rui Zhang, Yulong Chen, Fa Zhang, Dehui Qiu, Yuling Zheng, Xiaohua Wan
2021 J jnl
Multi-labelled proteins recognition for high-throughput microscopy images using deep convolutional neural networks.
BMC Bioinform.
Enze Zhang, Boheng Zhang, Shaohan Hu, Fa Zhang, Zhiyong Liu, Xiaohua Wan
2021 J jnl
PEFS: AI-Driven Prediction Based Energy-Aware Fault-Tolerant Scheduling Scheme for Cloud Data Center.
IEEE Trans. Sustain. Comput.
Avinab Marahatta, Qin Xin, Ce Chi, Fa Zhang, Zhiyong Liu
2021 — conf
PG-TFNet: Transformer-based Fusion Network Integrating Pathological Images and Genomic Data for Cancer Survival Analysis.
BIBM
Zhilong Lv, Yuexiao Lin, Rui Yan, Zhenghe Yang, Ying Wang, Fa Zhang
2021 — conf
PickerOptimizer: A Deep Learning-Based Particle Optimizer for Cryo-Electron Microscopy Particle-Picking Algorithms.
ISBRA
Hongjia Li, Ge Chen, Shan Gao, Jintao Li, Fa Zhang
2021 — conf
Predicting Drug-Disease Associations Based on Network Consistency Projection.
ICIC (3)
Qiang Zhang, Zonglan Zuo, Rui Yan, Chunhou Zheng, Fa Zhang
2021 J jnl
Preface.
J. Comput. Sci. Technol.
Yi Pan, De-Shuang Huang, Jian-Xin Wang, Fa Zhang
2021 J jnl
Richer fusion network for breast cancer classification based on multimodal data.
BMC Medical Informatics Decis. Mak.
Rui Yan, Fa Zhang, Xiaosong Rao, Zhilong Lv, Jintao Li, Lingling Zhang, Shuang Liang, Yilin Li, Fei Ren, Chunhou Zheng, Jun Liang
2021 — conf
SHREC 2021: Classification in Cryo-electron Tomograms.
3DOR
Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, M. Cristina Trueba, Remco C. Veltkamp, Friedrich Förster, Xiao Wang, Daisuke Kihara, Emmanuel Moebel, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak, Giorgos Papoulias, Stavros Gerolymatos, Evangelia I. Zacharaki, Konstantinos Moustakas, Xiangrui Zeng, Sinuo Liu, Min Xu, Yaoyu Wang, Cheng Chen, Xuefeng Cui, Fa Zhang
2021 A* conf
Self-Supervised Cryo-Electron Tomography Volumetric Image Restoration from Single Noisy Volume with Sparsity Constraint.
ICCV
Zhidong Yang, Fa Zhang, Renmin Han
2021 C conf
Spatio-Temporal Features Processing Network for Change Detection in Remote Sensing Images.
IGARSS
Zihao Yang, Zhaobin Cao, Xiaohua Wan, Fa Zhang, Guangming Tan
2021 — conf
TransPicker: a Transformer-based Framework for Particle Picking in cryoEM Micrographs.
BIBM
Chi Zhang, Hongjia Li, Xiaohua Wan, Xuemei Chen, Zhenghe Yang, Jieqing Feng, Fa Zhang
2020 J jnl
A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography.
J. Comput. Biol.
Zihao Wang, Jingrong Zhang, Weifang Gao, Zhiyong Liu, Xiaohua Wan, Fa Zhang
2020 B conf
An Energy Saving-Oriented Incentive Mechanism in Colocation Data Centers.
ICCCN
Ce Chi, Kaixuan Ji, Avinab Marahatta, Fa Zhang, Youshi Wang, Zhiyong Liu
2020 C conf
An Incentive Mechanism for Improving Energy Efficiency of Colocation Data Centers Based on Power Prediction.
ISCC
Ce Chi, Kaixuan Ji, Avinab Marahatta, Fa Zhang, Youshi Wang, Zhiyong Liu
2020 — conf
An Integration Framework for Liver Cancer Subtype Classification and Survival Prediction Based on Multi-omics Data.
ICIC (3)
Zhonglie Wang, Rui Yan, Jie Liu, Yudong Liu, Fei Ren, Chunhou Zheng, Fa Zhang
2020 J jnl
Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography.
BMC Bioinform.
Lun Li, Renmin Han, Zhaotian Zhang, Tiande Guo, Zhiyong Liu, Fa Zhang
2020 — conf
Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography.
ISBRA
Shan Gao, Renmin Han, Xiangrui Zeng, Xuefeng Cui, Zhiyong Liu, Min Xu, Fa Zhang
2020 — conf
Eco-friendly Dynamic Task Scheduling for Regional Data Center.
e-Energy
Avinab Marahatta, Ce Chi, Kaixuan Ji, Carlos Juiz, Fa Zhang, Zhiyong Liu
2020 — conf
Energy Efficient Scheduling Based on Marginal Cost and Task Grouping in Data Centers.
e-Energy
Kaixuan Ji, Ce Chi, Avinab Marahatta, Fa Zhang, Zhiyong Liu
2020 — conf
Jointly Optimizing the IT and Cooling Systems for Data Center Energy Efficiency based on Multi-Agent Deep Reinforcement Learning.
e-Energy
Ce Chi, Kaixuan Ji, Avinab Marahatta, Penglei Song, Fa Zhang, Zhiyong Liu
2020 — conf
LR-Net: A Multi-task Model Using Relationship-based Contour Information to Enhance the Semantic Segmentation of Cancer Regions.
BIBM
Baorong Shi, Hong Zhang, Rui Yan, Wang Jing, Jinfeng Zang, Fa Zhang
2020 — conf
NANet: Nuclei-Aware Network for Grading of Breast Cancer in HE Stained Pathological Images.
BIBM
Rui Yan, Jintao Li, Xiaosong Rao, Zhilong Lv, Chunhou Zheng, Jinjin Dou, Xiaowen Wang, Fei Ren, Fa Zhang
2020 B conf
PStream: Priority-Based Stream Scheduling for Heterogeneous Paths in Multipath-QUIC.
ICCCN
Xiang Shi, Lin Wang, Fa Zhang, Biyu Zhou, Zhiyong Liu
2020 — conf
PriorityBucket: A Multipath-QUIC Scheduler on Accelerating First Rendering Time in Page Loading.
e-Energy
Xiang Shi, Fa Zhang, Zhiyong Liu
2020 J jnl
SHREC 2020: Classification in cryo-electron tomograms.
Comput. Graph.
Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, Remco C. Veltkamp, Friedrich Förster, Yu Hao, Xiaohua Wan, Xuefeng Cui, Fa Zhang, Emmanuel Moebel, Xiao Wang, Daisuke Kihara, Xiangrui Zeng, Min Xu, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak
2019 J jnl
A joint method for marker-free alignment of tilt series in electron tomography.
Bioinform.
Renmin Han, Zhipeng Bao, Xiangrui Zeng, Tongxin Niu, Fa Zhang, Min Xu, Xin Gao
2019 J jnl
A market-oriented incentive mechanism for emergency demand response in colocation data centers.
Sustain. Comput. Informatics Syst.
Youshi Wang, Fa Zhang, Ce Chi, Shaolei Ren, Fangming Liu, Rui Wang, Zhiyong Liu
2019 J jnl
AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction.
Bioinform.
Renmin Han, Xiaohua Wan, Lun Li, Albert F. Lawrence, Peng Yang, Yu Li, Sheng Wang, Fei Sun, Zhiyong Liu, Xin Gao, Fa Zhang
2019 — conf
Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Weighted 3D Markov Random Field.
BIBM
Zhilong Lv, Rui Yan, Xinyu Liu, Zhongke Wu, Yicheng Zhu, Shiwei Sun, Fa Zhang, Xingce Wang, Xiaohua Wan
2019 — conf
Classification in Cryo-Electron Tomograms.
3DOR@Eurographics
Ilja Gubins, Gijs van der Schot, Remco C. Veltkamp, Friedrich Förster, Xuefeng Du, Xiangrui Zeng, Zhenxi Zhu, Lufan Chang, Min Xu, Emmanuel Moebel, Antonio Martínez-Sánchez, Charles Kervrann, Tuan Manh Lai, Xusi Han, Genki Terashi, Daisuke Kihara, Benjamin A. Himes, Xiaohua Wan, Jingrong Zhang, Shan Gao, Yu Hao, Zhilong Lv, Xiaohua Wan, Zhidong Yang, Zijun Ding, Xuefeng Cui, Fa Zhang
2019 — conf
Classifying Mixed Patterns of Proteins in High-Throughput Microscopy Images Using Deep Neural Networks.
ICIC (1)
Enze Zhang, Boheng Zhang, Shaohan Hu, Fa Zhang, Xiaohua Wan
2019 — conf
DM-SIRT: A Distributed Method for Multi-tilt Reconstruction in Electron Tomography.
ISBRA
Zihao Wang, Jingrong Zhang, Xintong Liu, Zhiyong Liu, Xiaohua Wan, Fa Zhang
2019 J jnl
Energy-Aware Fault-Tolerant Dynamic Task Scheduling Scheme for Virtualized Cloud Data Centers.
Mob. Networks Appl.
Avinab Marahatta, Youshi Wang, Fa Zhang, Arun Kumar Sangaiah, Sumarga Kumar Sah Tyagi, Zhiyong Liu
2019 B conf
FStream: Flexible Stream Scheduling and Prioritizing in Multipath-QUIC.
ICPADS
Xiang Shi, Lin Wang, Fa Zhang, Zhiyong Liu
2019 — conf
Integration of Multimodal Data for Breast Cancer Classification Using a Hybrid Deep Learning Method.
ICIC (1)
Rui Yan, Fei Ren, Xiaosong Rao, Baorong Shi, Tiange Xiang, Lingling Zhang, Yudong Liu, Jun Liang, Chunhou Zheng, Fa Zhang
2019 J jnl
PABO: Mitigating congestion via packet bounce in data center networks.
Comput. Commun.
Xiang Shi, Lin Wang, Fa Zhang, Kai Zheng, Max Mühlhäuser, Zhiyong Liu
2019 J jnl
PIXER: an automated particle-selection method based on segmentation using a deep neural network.
BMC Bioinform.
Jingrong Zhang, Zihao Wang, Yu Chen, Renmin Han, Zhiyong Liu, Fei Sun, Fa Zhang
2019 — conf
Predicting Tumor Mutational Burden from Liver Cancer Pathological Images Using Convolutional Neural Network.
BIBM
Hong Zhang, Fa Zhang, Fei Ren, Zhonglie Wang, Xiaosong Rao, Li Li, Junbo Hao, Rui Yan, Jiancheng Luo, Ming Du
2018 — conf
A Hybrid Convolutional and Recurrent Deep Neural Network for Breast Cancer Pathological Image Classification.
BIBM
Rui Yan, Fei Ren, Zihao Wang, Lihua Wang, Yubo Ren, Yudong Liu, Xiaosong Rao, Chunhou Zheng, Fa Zhang
2018 J jnl
A fast fiducial marker tracking model for fully automatic alignment in electron tomography.
Bioinform.
Renmin Han, Fa Zhang, Xin Gao
2018 — ed.
Bioinformatics Research and Applications - 14th International Symposium, ISBRA 2018, Beijing, China, June 8-11, 2018, Proceedings
ISBRA
Fa Zhang, Zhipeng Cai, Pavel Skums, Shihua Zhang
2018 J jnl
DLBI: Deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy.
CoRR
Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Mingshu Zhang, Ming Fan, Lihua Li, Xin Gao, Renmin Han
2018 J jnl
DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy.
Bioinform.
Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Mingshu Zhang, Ming Fan, Lihua Li, Xin Gao, Renmin Han
2018 — conf
Energy-aware Fault-tolerant Scheduling Scheme based on Intelligent Prediction Model for Cloud Data Center.
IGSC
Avinab Marahatta, Ce Chi, Fa Zhang, Zhiyong Liu
2018 — conf
Fiducial marker detection via deep learning approach for electron tomography.
BIBM
Yu Hao, Renmin Han, Xiaohua Wan, Fa Zhang, Shiwei Sun
2018 J jnl
ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer.
J. Comput. Biol.
Zihao Wang, Yu Chen, Jingrong Zhang, Lun Li, Xiaohua Wan, Zhiyong Liu, Fei Sun, Fa Zhang
2018 — conf
Memory-Efficient and Stabilizing Management System and Parallel Methods for RELION Using CUDA and MPI.
ISBRA
Jingrong Zhang, Zihao Wang, Yu Chen, Zhiyong Liu, Fa Zhang
2018 — conf
Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics Application.
BIBM
Zihao Wang, Mingzhe Zhang, Jingrong Zhang, Rui Yan, Xiaohua Wan, Zhiyong Liu, Fa Zhang, Xuefeng Cui
2018 J jnl
PABO: A Link-Layer Congestion Mitigation Mechanism Based on Packet Bounce.
CoRR
Xiang Shi, Lin Wang, Fa Zhang, Kai Zheng, Max Mühlhäuser, Zhiyong Liu
2018 J jnl
SegET: Deep Neural Network with Rich Contextual Features for Cellular Structures Segmentation in Electron Tomography Image.
CoRR
Enze Zhang, Fa Zhang, Zhiyong Liu, Xiaohua Wan, Lifa Zhu
2017 — conf
A Fully Automatic Geometric Parameters Determining Method for Electron Tomography.
ISBRA
Yu Chen, Zihao Wang, Lun Li, Xiaohua Wan, Fei Sun, Fa Zhang
2017 J jnl
A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM.
IEEE ACM Trans. Comput. Biol. Bioinform.
Fa Zhang, Yu Chen, Fei Ren, Xuan Wang, Zhiyong Liu, Xiaohua Wan
2017 — conf
Accelerating Electron Tomography Reconstruction Algorithm ICON Using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer.
ISBRA
Zihao Wang, Yu Chen, Jingrong Zhang, Lun Li, Xiaohua Wan, Zhiyong Liu, Fei Sun, Fa Zhang
2017 — conf
Cost Reduction in Hybrid Clouds for Enterprise Computing.
ICDCS Workshops
Biyu Zhou, Fa Zhang, Jie Wu, Zhiyong Liu
2017 — conf
Energy efficiency in colocation data centers: A joint incentive mechanism approach.
IGSC
Youshi Wang, Fa Zhang, Shaolei Ren, Fangming Liu, Rui Wang, Zhiyong Liu
2017 C conf
Hardness of Routing for Minimizing Superlinear Polynomial Cost in Directed Graphs.
TAMC
Yangguang Shi, Fa Zhang, Zhiyong Liu
2017 J jnl
Joint Optimization of Operational Cost and Performance Interference in Cloud Data Centers.
IEEE Trans. Cloud Comput.
Xibo Jin, Fa Zhang, Lin Wang, Songlin Hu, Biyu Zhou, Zhiyong Liu
2017 B conf
Joint Optimization of Server and Network Resource Utilization in Cloud Data Centers.
GLOBECOM
Biyu Zhou, Jie Wu, Lin Wang, Fa Zhang, Zhiyong Liu
2017 B conf
Online Flow Scheduling with Deadline for Energy Conservation in Data Center Networks.
ICPADS
Biyu Zhou, Jie Wu, Lin Wang, Fa Zhang, Zhiyong Liu
2017 — conf
PABO: Congestion mitigation via packet bounce.
ICC
Xiang Shi, Lin Wang, Fa Zhang, Kai Zheng, Zhiyong Liu
2017 C conf
Real-time Task Scheduling for joint energy efficiency optimization in data centers.
ISCC
Youshi Wang, Fa Zhang, Rui Wang, Yangguang Shi, Hua Guo, Zhiyong Liu
2017 C conf
Resource optimization for survivable embedding of virtual clusters in cloud data centers.
IPCCC
Biyu Zhou, Jie Wu, Fa Zhang, Zhiyong Liu
2017 J jnl
Towards the Tradeoffs in Designing Data Center Network Architectures.
IEEE Trans. Parallel Distributed Syst.
Dawei Li, Jie Wu, Zhiyong Liu, Fa Zhang
2016 — conf
COMRANCE: A rapid method for Network-on-Chip design space exploration.
IGSC
Mingzhe Zhang, Yangguang Shi, Fa Zhang, Zhiyong Liu
2016 J jnl
Green Data Centers: A Survey, Perspectives, and Future Directions.
CoRR
Xibo Jin, Fa Zhang, Athanasios V. Vasilakos, Zhiyong Liu
2016 J jnl
HDEER: A Distributed Routing Scheme for Energy-Efficient Networking.
IEEE J. Sel. Areas Commun.
Biyu Zhou, Fa Zhang, Lin Wang, Chenying Hou, Antonio Fernández Anta, Athanasios V. Vasilakos, Youshi Wang, Jie Wu, Zhiyong Liu
2016 — conf
aWGRS: Automates paired-end whole genome re-sequencing data analysis framework.
BIBM
Xiujuan Sun, Fa Zhang, Xiaohua Wan, Jinzhi Zhang
2015 B conf
Dual-centric Data Center Network Architectures.
ICPP
Dawei Li, Jie Wu, Zhiyong Liu, Fa Zhang
2015 J jnl
Multi-resource Energy-efficient Routing in Cloud Data Centers with Networks-as-a-Service.
CoRR
Lin Wang, Antonio Fernández Anta, Fa Zhang, Jie Wu, Zhiyong Liu
2015 C conf
Multi-resource energy-efficient routing in cloud data centers with network-as-a-service.
ISCC
Lin Wang, Antonio Fernández Anta, Fa Zhang, Jie Wu, Zhiyong Liu
2015 J jnl
Randomized oblivious integral routing for minimizing power cost.
Theor. Comput. Sci.
Yangguang Shi, Fa Zhang, Jie Wu, Zhiyong Liu
2015 J jnl
Scheduling for energy minimization on restricted parallel processors.
J. Parallel Distributed Comput.
Xibo Jin, Fa Zhang, Liya Fan, Ying Song, Zhiyong Liu
2015 Misc conf
Truthful Strategy and Resource Integration for Multi-tenant Data Center Demand Response.
FAW
Youshi Wang, Fa Zhang, Zhiyong Liu
2014 J jnl
A Joint Optimization of Operational Cost and Performance Interference in Cloud Data Centers.
CoRR
Xibo Jin, Fa Zhang, Lin Wang, Songlin Hu, Biyu Zhou, Zhiyong Liu
2014 — conf
A Parallel Scheme for Three-Dimensional Reconstruction in Large-Field Electron Tomography.
ISBRA
Jingrong Zhang, Xiaohua Wan, Fa Zhang, Fei Ren, Xuan Wang, Zhiyong Liu
2014 — conf
An Improved Correlation Method Based on Rotation Invariant Feature for Automatic Particle Selection.
ISBRA
Yu Chen, Fei Ren, Xiaohua Wan, Xuan Wang, Fa Zhang
2014 C conf
DEER: A distributed routing scheme for achieving network energy efficiency.
LANMAN
Biyu Zhou, Lin Wang, Fa Zhang, Xibo Jin, Zhiyong Liu
2014 A conf
Energy-Efficient Flow Scheduling and Routing with Hard Deadlines in Data Center Networks.
ICDCS
Lin Wang, Fa Zhang, Kai Zheng, Athanasios V. Vasilakos, Shaolei Ren, Zhiyong Liu
2014 J jnl
Energy-Efficient Flow Scheduling and Routing with Hard Deadlines in Data Center Networks.
CoRR
Lin Wang, Fa Zhang, Kai Zheng, Athanasios V. Vasilakos, Shaolei Ren, Zhiyong Liu
2014 J jnl
GreenDCN: A General Framework for Achieving Energy Efficiency in Data Center Networks.
IEEE J. Sel. Areas Commun.
Lin Wang, Fa Zhang, Jordi Arjona Aroca, Athanasios V. Vasilakos, Kai Zheng, Chenying Hou, Dan Li, Zhiyong Liu
2014 J jnl
Improving the Load Balance of MapReduce Operations based on the Key Distribution of Pairs.
CoRR
Liya Fan, Bo Gao, Xi Sun, Fa Zhang, Zhiyong Liu
2014 C conf
Joint power optimization through VM placement and flow scheduling in data centers.
IPCCC
Dawei Li, Jie Wu, Zhiyong Liu, Fa Zhang
2014 J jnl
OS4M: Achieving Global Load Balance of MapReduce Workload by Scheduling at the Operation Level.
CoRR
Liya Fan, Bo Gao, Fa Zhang, Zhiyong Liu
2014 Misc conf
Oblivious Integral Routing for Minimizing the Quadratic Polynomial Cost.
FAW
Yangguang Shi, Fa Zhang, Zhiyong Liu
2014 B conf
Polylogarithmic Competitive Algorithm for Energy Minimization in Optical WDM Networks.
ICNP
Yangguang Shi, Fa Zhang, Zhiyong Liu
2013 J jnl
A General Framework for Achieving Energy Efficiency in Data Center Networks
CoRR
Lin Wang, Fa Zhang, Jordi Arjona Aroca, Athanasios V. Vasilakos, Kai Zheng, Chenying Hou, Dan Li, Zhiyong Liu
2013 B conf
A Universally Stable and Energy-Efficient Scheduling Protocol for Packet Switching Network.
NCA
Yangguang Shi, Fa Zhang, Zhiyong Liu
2013 J jnl
A fast calculation strategy of density function in ISAF reconstruction algorithm.
Sci. China Inf. Sci.
Gongming Wang, Fa Zhang, Qi Chu, Liya Fan, Fei Sun, Zhiyong Liu
2013 J jnl
A hop-by-hop energy efficient distributed routing scheme.
SIGMETRICS Perform. Evaluation Rev.
Chenying Hou, Fa Zhang, Antonio Fernández Anta, Lin Wang, Zhiyong Liu
2013 — conf
Discrete Min-Energy Scheduling on Restricted Parallel Processors.
IPDPS Workshops
Xibo Jin, Fa Zhang, Zhiyong Liu
2013 J jnl
Energy-Efficient Scheduling with Time and Processors Eligibility Restrictions
CoRR
Xibo Jin, Fa Zhang, Ying Song, Liya Fan, Zhiyong Liu
2013 — conf
Energy-Efficient Scheduling with Time and Processors Eligibility Restrictions.
Euro-Par
Xibo Jin, Fa Zhang, Ying Song, Liya Fan, Zhiyong Liu
2013 B conf
Improving the Network Energy Efficiency in MapReduce Systems.
ICCCN
Lin Wang, Fa Zhang, Zhiyong Liu
2013 B conf
Incorporating Rate Adaptation Into Green Networking for Future Data Centers.
NCA
Lin Wang, Fa Zhang, Chenying Hou, Jordi Arjona Aroca, Zhiyong Liu
2013 J jnl
Iterative Methods in Large Field Electron Microscope Tomography.
SIAM J. Sci. Comput.
Xiaohua Wan, Sebastien Phan, Albert F. Lawrence, Fa Zhang, Renmin Han, Zhiyong Liu, Mark H. Ellisman
2013 J jnl
Joint virtual machine assignment and traffic engineering for green data center networks.
SIGMETRICS Perform. Evaluation Rev.
Lin Wang, Fa Zhang, Athanasios V. Vasilakos, Chenying Hou, Zhiyong Liu
2013 B conf
Risk management for virtual machines consolidation in data centers.
GLOBECOM
Xibo Jin, Fa Zhang, Songlin Hu, Zhiyong Liu
2013 J jnl
Routing for Energy Minimization with Discrete Cost Functions
CoRR
Lin Wang, Antonio Fernández Anta, Fa Zhang, Chenying Hou, Zhiyong Liu
2012 J jnl
An Accelerated ISAF Algorithm with the Fast Mapping Strategy.
J. Comput.
Gongming Wang, Fa Zhang, Fei Sun, Zhiyong Liu
2012 J jnl
An effective approximation algorithm for the Malleable Parallel Task Scheduling problem.
J. Parallel Distributed Comput.
Liya Fan, Fa Zhang, Gongming Wang, Zhiyong Liu
2012 C conf
Energy-Efficient Network Routing with Discrete Cost Functions.
TAMC
Lin Wang, Antonio Fernández Anta, Fa Zhang, Chenying Hou, Zhiyong Liu
2012 J jnl
High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs.
BMC Bioinform.
Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu
2011 — conf
A fast mapping method in the ISAF reconstruction algorithm.
EMBC
Gongming Wang, Fa Zhang, Qi Chu, Fei Sun, Zhiyong Liu
2011 — conf
High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs.
ISBRA
Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu
2011 — conf
Time-Slot Energy-Efficient Scheduling Algorithm for Capacity Limited Networks.
GreenCom
Chenying Hou, Fa Zhang, Lin Wang, Zhiyong Liu
2010 — conf
An accurate, automatic method for markerless alignment of electron tomographic images.
BIBM
Qi Chu, Fa Zhang, Kai Zhang, Xiaohua Wan, Mingwei Chen, Zhiyong Liu
2010 — conf
Protein Sequence Alignment Algorithm Based on Hybrid Profile Information.
BIOCOMP
Yan Jia, Ziyang Chen, Xuan Wang, Fa Zhang
2010 — conf
Protein classification using family profiles.
FSKD
Yugang Li, Yao Lu, Fa Zhang, Zhenge Qiu, Zhiyong Liu
2009 — conf
A New Method for Remote Protein Classification.
BMEI
Yugang Li, Zhiyong Liu, Fa Zhang, Zhenge Qiu
2009 — ch.
A Self-adaptive Greedy Scheduling Scheme for a Multi-Objective Optimization on Identical Parallel Machines.
Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing
Liya Fan, Fa Zhang, Gongming Wang, Bo Yuan, Zhiyong Liu
2009 J jnl
A framework to refine particle clusters produced by EMAN.
Bioinform.
Liya Fan, Fa Zhang, Gongming Wang, Zhiyong Liu
2009 Misc conf
An effective scheduling algorithm for Linear Makespan Minimization on Unrelated Parallel Machines.
HiPC
Liya Fan, Fa Zhang, Gongming Wang, Zhiyong Liu
2009 B conf
Modified Simultaneous Algebraic Reconstruction Technique and its Parallelization in Cryo-electron Tomography.
ICPADS
Xiaohua Wan, Fa Zhang, Zhiyong Liu
2008 — conf
An improvement method based on OrthoMCL by adding the domain information.
BIOCOMP
Xinyu Que, Fa Zhang, Shengzhong Feng, Bo Yuan, Zhiyong Liu
2007 Misc conf
Improved structural modeling based on conserved domain clusters and structure-anchored alignments.
SAC
Fa Zhang, Lin Xu, Zhiyong Liu, Bo Yuan
2007 C conf
Using Domain-Based Structural Ensemble to Improve Structure Modeling.
BIBE
Fa Zhang, Zhaoyun Ma, Zhiyong Liu, Bo Yuan
2006 A conf
A method to improve structural modeling based on conserved domain clusters.
IPDPS
Fa Zhang, Lin Xu, Bo Yuan
2006 C conf
A method to integrate, assess and characterize the protein-protein interactions.
CIBCB
Fa Zhang, Lin Xu, Jingchun Chen, Zhiyong Liu, Bo Yuan
2006 C conf
A profile-based protein sequence alignment algorithm for a domain clustering database.
CIBCB
Lin Xu, Fa Zhang, Zhiyong Liu
2005 — ch.
Clustering of eukaryotic orthologs based on sequence and Domain Similarities using the Markov Graph-Flow Algorithm.
Advances in Bioinformatics and Its Applications
Hatice Gulcin Ozer, Jingchun Chen, Fa Zhang, Bo Yuan
2005 — ch.
The Construction of Structural Templates for the Modeling of conserved protein Domains.
Advances in Bioinformatics and Its Applications
Fa Zhang, Jingchun Chen, Zhiyong Liu, Bo Yuan
2004 J jnl
Parallel divide and conquer bio-sequence comparison based on smith-waterman algorithm.
Sci. China Ser. F Inf. Sci.
Fa Zhang, Xiangzhen Qiao, Zhiyong Liu