F. Alex Feltus

23 papers B 1Misc 1Journal 15Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
GEMDiff: a diffusion workflow bridges between normal and tumor gene expression states: a breast cancer case study.
Briefings Bioinform.
Xusheng Ai, Melissa C. Smith, F. Alex Feltus
2024 Misc conf
Hydra: A Scalable Decentralized P2P Storage Federation for Large Scientific Datasets.
ICNC
Justin Presley, Xi Wang, Xusheng Ai, Tianyuan Yu, Tym Brandel, Proyash Podder, Varun Patil, Alex Afanasyev, F. Alex Feltus, Lixia Zhang, Susmit Shannigrahi
2023 B conf
GNSGA: A Decentralized Data Replication Algorithm for Big Science Data.
IFIP Networking
Xi Wang, Xusheng Ai, F. Alex Feltus, Susmit Shannigrahi
2022 J jnl
AABAC - Automated Attribute Based Access Control for Genomics Data.
CoRR
David Reddick, Justin Presley, F. Alex Feltus, Susmit Shannigrahi
2022 J jnl
Addressing noise in co-expression network construction.
Briefings Bioinform.
Josh J. R. Burns, Benjamin T. Shealy, Mitchell S. Greer, John A. Hadish, Matthew McGowan, Tyler Biggs, Melissa C. Smith, F. Alex Feltus, Stephen P. Ficklin
2022 — conf
Case Study of Attribute Based Access Control for Genomics Data Using Named Data Networking.
CCNC
David Reddick, F. Alex Feltus, Susmit Shannigrahi
2022 J jnl
GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure.
BMC Bioinform.
John A. Hadish, Tyler Biggs, Benjamin T. Shealy, M. Reed Bender, Coleman McKnight, Connor Wytko, Melissa C. Smith, F. Alex Feltus, Loren A. Honaas, Stephen P. Ficklin
2022 J jnl
Hydra - A Federated Data Repository over NDN.
CoRR
Justin Presley, Xi Wang, Tym Brandel, Xusheng Ai, Proyash Podder, Tianyuan Yu, Varun Patil, Lixia Zhang, Alex Afanasyev, F. Alex Feltus, Susmit Shannigrahi
2021 — conf
Intelligent Resource Provisioning for Scientific Workflows and HPC.
WORKS
Benjamin T. Shealy, F. Alex Feltus, Melissa C. Smith
2021 J jnl
Named Data Networking for Genomics Data Management and Integrated Workflows.
Frontiers Big Data
Cameron Ogle, David Reddick, Coleman McKnight, Tyler Biggs, Rini Pauly, Stephen P. Ficklin, F. Alex Feltus, Susmit Shannigrahi
2020 J jnl
Cellular State Transformations Using Deep Learning for Precision Medicine Applications.
Patterns
Colin Targonski, M. Reed Bender, Benjamin T. Shealy, Benafsh Husain, Bill Paseman, Melissa C. Smith, F. Alex Feltus
2020 J jnl
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.
Database J. Biol. Databases Curation
Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, F. Alex Feltus, Stephen P. Ficklin
2019 J jnl
Cellular State Transformations using Generative Adversarial Networks.
CoRR
Colin Targonski, Benjamin T. Shealy, Melissa C. Smith, F. Alex Feltus
2019 J jnl
GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks.
IEEE Access
Benjamin T. Shealy, Josh J. R. Burns, Melissa C. Smith, F. Alex Feltus, Stephen P. Ficklin
2019 — conf
Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences.
PEARC
Mats Rynge, Karan Vahi, Ewa Deelman, Anirban Mandal, Ilya Baldin, Omkar Bhide, Randy W. Heiland, Von Welch, Raquel Hill, William L. Poehlman, F. Alex Feltus
2019 J jnl
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
Database J. Biol. Databases Curation
Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin
2018 J jnl
Maximizing the performance of scientific data transfer by optimizing the interface between parallel file systems and advanced research networks.
Future Gener. Comput. Syst.
Nicholas Mills, F. Alex Feltus, Walter B. Ligon III
2018 — conf
NDN-SCI for managing large scale genomics data.
ICN
Susmit Shannigrahi, Chengyu Fan, Christos Papadopoulos, F. Alex Feltus
2013 J jnl
Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study.
BMC Syst. Biol.
F. Alex Feltus, Stephen P. Ficklin, Scott M. Gibson, Melissa C. Smith
2013 J jnl
Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.
Database J. Biol. Databases Curation
Lacey-Anne Sanderson, Stephen P. Ficklin, Chun-Huai Cheng, Sook Jung, F. Alex Feltus, Kirstin E. Bett, Dorrie Main
2010 — conf
A non-parameter Ising model for network-based identification of differentially expressed genes in recurrent breast cancer patients.
BIBM
Xumeng Li, F. Alex Feltus, Xiaoqian Sun, James Zijun Wang, Feng Luo
2010 — conf
Effectively Integrating Information Content and Structural Relationship to Improve the GO-based Similarity Measure Between Proteins.
BIOCOMP
Bo Li, Feng Luo, James Z. Wang, F. Alex Feltus, Jizhong Zhou
2010 J jnl
Effectively integrating information content and structural relationship to improve the GO-based similarity measure between proteins
CoRR
Bo Li, James Z. Wang, F. Alex Feltus, Jizhong Zhou, Feng Luo