Ewy A. Mathé

25 papers Journal 20Unranked 4
YearRankTypeTitle / Venue / Authors
2024 — conf
Aligning Orphanet Classification to Identify Disease Characteristics among Rare Disease Clusters.
BIBM
Sungrim Moon, Jessica Maine, Ewy A. Mathé, Qian Zhu
2024 J jnl
Computational Metabolomics: Towards Molecules, Models, and their Meaning (Dagstuhl Seminar 24181).
Dagstuhl Reports
Timothy M. D. Ebbels, Soha Hassoun, Ewy A. Mathé, Justin J. J. van der Hooft, Haley Chatelaine
2023 J jnl
Clustering rare diseases within an ontology-enriched knowledge graph.
J. Am. Medical Informatics Assoc.
Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A. Mathé
2023 J jnl
Pharos 2023: an integrated resource for the understudied human proteome.
Nucleic Acids Res.
Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea
2023 J jnl
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes.
Bioinform.
John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A. Mathé
2023 — conf
User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG).
MedInfo
Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A. Mathé, Qian Zhu
2022 J jnl
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research.
J. Chem. Inf. Model.
Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A. Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea
2022 J jnl
Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181).
Dagstuhl Reports
Corey Broeckling, Timothy M. D. Ebbels, Ewy A. Mathé, Nicola Zamboni, Cecilia Wieder
2022 J jnl
NCATS Inxight Drugs: a comprehensive and curated portal for translational research.
Nucleic Acids Res.
Vishal B. Siramshetty, Ivan Grishagin, Ðac-Trung Nguyen, Tyler Peryea, Yulia Skovpen, Oleg V. Stroganov, Daniel Katzel, Timothy Sheils, Ajit Jadhav, Ewy A. Mathé, Noel Southall
2022 J jnl
Rare disease-based scientific annotation knowledge graph.
Frontiers Artif. Intell.
Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A. Mathé, Yanji Xu
2021 J jnl
Network analyses in microbiome based on high-throughput multi-omics data.
Briefings Bioinform.
Zhaoqian Liu, Anjun Ma, Ewy A. Mathé, Marlena Merling, Qin Ma, Bingqiang Liu
2021 — conf
Scientific Evidence Based Knowledge Graph in Rare Diseases.
BIBM
Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A. Mathé, Eric Sid
2021 J jnl
Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.
BMC Bioinform.
Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A. Mathé
2021 J jnl
TCRD and Pharos 2021: mining the human proteome for disease biology.
Nucleic Acids Res.
Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea
2020 J jnl
Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.
BMC Bioinform.
Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang
2020 J jnl
Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.
BMC Medical Informatics Decis. Mak.
Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé
2020 J jnl
The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.
BMC Medical Informatics Decis. Mak.
Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé
2019 J jnl
Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge.
BMC Bioinform.
Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang
2019 J jnl
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.
BMC Bioinform.
Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang
2018 J jnl
IntLIM: integration using linear models of metabolomics and gene expression data.
BMC Bioinform.
Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A. Mathé
2018 J jnl
Matchmaking in Bioinformatics.
F1000Research
Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers
2017 J jnl
ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.
Bioinform.
Elizabeth Baskin, Rick Farouni, Ewy A. Mathé
2017 J jnl
ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data.
Bioinform.
Elizabeth Baskin, Rick Farouni, Ewy A. Mathé
2016 — book
Statistical Genomics - Methods and Protocols
Statistical Genomics
Ewy A. Mathé, Sean R. Davis
2008 — conf
Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein.
BIBM
Majid Masso, Ewy A. Mathé, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman