Evgeny M. Zdobnov

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2023 J jnl
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity.
Nucleic Acids Res.
Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Mathieu Seppey, Matthew Berkeley, Evgenia V. Kriventseva, Evgeny M. Zdobnov
2022 J jnl
Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart.
PLoS Comput. Biol.
Silas Kieser, Evgeny M. Zdobnov, Mirko Trajkovski
2021 J jnl
OrthoDB in 2020: evolutionary and functional annotations of orthologs.
Nucleic Acids Res.
Evgeny M. Zdobnov, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Matthew Berkeley, Evgenia V. Kriventseva
2020 J jnl
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
BMC Bioinform.
Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue
2020 J jnl
Phigaro: high-throughput prophage sequence annotation.
Bioinform.
Elizaveta V. Starikova, Polina O. Tikhonova, Nikita A. Prianichnikov, Chris M. Rands, Evgeny M. Zdobnov, Elena N. Ilina, Vadim M. Govorun
2019 J jnl
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.
Nucleic Acids Res.
Evgenia V. Kriventseva, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Renata Dias, Felipe A. Simão, Evgeny M. Zdobnov
2017 J jnl
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.
Nucleic Acids Res.
Evgeny M. Zdobnov, Fredrik Tegenfeldt, Dmitry Kuznetsov, Robert M. Waterhouse, Felipe A. Simão, Panagiotis Ioannidis, Mathieu Seppey, Alexis Loetscher, Evgenia V. Kriventseva
2017 J jnl
Understanding key features of bacterial restriction-modification systems through quantitative modeling.
BMC Syst. Biol.
Andjela Rodic, Bojana Blagojevic, Evgeny M. Zdobnov, Magdalena Djordjevic, Marko Djordjevic
2016 J jnl
CEGA - a catalog of conserved elements from genomic alignments.
Nucleic Acids Res.
Aline Dousse, Thomas Junier, Evgeny M. Zdobnov
2015 J jnl
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Bioinform.
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis, Evgenia V. Kriventseva, Evgeny M. Zdobnov
2015 J jnl
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.
Nucleic Acids Res.
Evgenia V. Kriventseva, Fredrik Tegenfeldt, Tom J. Petty, Robert M. Waterhouse, Felipe A. Simão, Igor A. Pozdnyakov, Panagiotis Ioannidis, Evgeny M. Zdobnov
2014 J jnl
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res.
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
2013 J jnl
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs.
Nucleic Acids Res.
Robert M. Waterhouse, Fredrik Tegenfeldt, Jia Li, Evgeny M. Zdobnov, Evgenia V. Kriventseva
2013 J jnl
miRmap web: comprehensive microRNA target prediction online.
Nucleic Acids Res.
Charles E. Vejnar, Matthias Blum, Evgeny M. Zdobnov
2011 J jnl
OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011.
Nucleic Acids Res.
Robert M. Waterhouse, Evgeny M. Zdobnov, Fredrik Tegenfeldt, Jia Li, Evgenia V. Kriventseva
2010 J jnl
Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances.
PLoS Comput. Biol.
Jaebum Kim, Ryan Cunningham, Brian James, Stefan Wyder, Joshua D. Gibson, Oliver Niehuis, Evgeny M. Zdobnov, Hugh M. Robertson, Gene E. Robinson, John H. Werren, Saurabh Sinha
2010 J jnl
The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.
Bioinform.
Thomas Junier, Evgeny M. Zdobnov