Evangelos A. Coutsias

21 papers Journal 19Unranked 2

Year	Rank	Type	Title / Venue / Authors
2023	—	`conf`	Numerically stable algorithm for Inverse Kinematics of 6R problem and its applications to macrocycles. BCB Xin Cao, Mikhail Ignatov, George Jones, Sara N. Pollock, Evangelos A. Coutsias, Dima Kozakov
2021	J	`jnl`	Kinematic Reconstruction of Cyclic Peptides and Protein Backbones from Partial Data. J. Chem. Inf. Model. Mosavverul Hassan, Evangelos A. Coutsias
2021	J	`jnl`	Protein secondary structure motifs: A kinematic construction. J. Comput. Chem. Mosavverul Hassan, Evangelos A. Coutsias
2020	J	`jnl`	Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4. J. Comput. Aided Mol. Des. Sergei Kotelnikov, Andrey Alekseenko, Cong Liu, Mikhail Ignatov, Dzmitry Padhorny, Emiliano Brini, Mark Lukin, Evangelos A. Coutsias, Ken A. Dill, Dima Kozakov
2019	J	`jnl`	RMSD and Symmetry. J. Comput. Chem. Evangelos A. Coutsias, Michael J. Wester
2018	J	`jnl`	Laguerre-Intersection Method for Implicit Solvation. Int. J. Comput. Geom. Appl. Michelle Hatch Hummel, Bihua Yu, Carlos Simmerling, Evangelos A. Coutsias
2017	J	`jnl`	Characterization of Biomolecular Helices and Their Complementarity Using Geometric Analysis. J. Chem. Inf. Model. Kevin Hauser, Yiqing He, Miguel Garcia-Diaz, Carlos Simmerling, Evangelos A. Coutsias
2017	J	`jnl`	Laguerre-Intersection Method for Implicit Solvation. CoRR Michelle Hatch Hummel, Bihua Yu, Carlos Simmerling, Evangelos A. Coutsias
2016	J	`jnl`	Accurate Nat. Gaurav Bhardwaj, Vikram Khipple Mulligan, Christopher D. Bahl, Jason M. Gilmore, Peta J. Harvey, Olivier Cheneval, Garry W. Buchko, Surya V. S. R. K. Pulavarti, Quentin Kaas, Alexander Eletsky, Po-Ssu Huang, William A. Johnsen, Per Greisen, Gabriel J. Rocklin, Yifan Song, Thomas W. Linsky, Andrew M. Watkins, Stephen A. Rettie, Xianzhong Xu, Lauren P. Carter, Richard Bonneau, James M. Olson, Evangelos A. Coutsias, Colin E. Correnti, Thomas Szyperski, David J. Craik, David Baker
2016	J	`jnl`	Flexibility of Bricard's linkages and other structures via resultants and computer algebra. Math. Comput. Simul. Robert H. Lewis, Evangelos A. Coutsias
2015	J	`jnl`	Bricard flexible octahedra and the canonical cyclohexane. ACM Commun. Comput. Algebra Evangelos A. Coutsias
2011	J	`jnl`	The FALC-Loop web server for protein loop modeling. Nucleic Acids Res. Junsu Ko, Dongseon Lee, Hahnbeom Park, Evangelos A. Coutsias, Julian Lee, Chaok Seok
2008	J	`jnl`	Scaffold Topologies. 1. Exhaustive Enumeration up to Eight Rings. J. Chem. Inf. Model. Sara N. Pollock, Evangelos A. Coutsias, Michael J. Wester, Tudor I. Oprea
2008	J	`jnl`	Scaffold Topologies. 2. Analysis of Chemical Databases. J. Chem. Inf. Model. Michael J. Wester, Sara N. Pollock, Evangelos A. Coutsias, Tharun Kumar Allu, Sorel Muresan, Tudor I. Oprea
2006	—	`conf`	Algorithmic Search for Flexibility Using Resultants of Polynomial Systems. Automated Deduction in Geometry Robert H. Lewis, Evangelos A. Coutsias
2006	J	`jnl`	Spectral element modeling of semiconductor heterostructures. Math. Comput. Model. Gregory von Winckel, Sanjay Krishna, Evangelos A. Coutsias
2005	J	`jnl`	Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller. J. Comput. Chem. Evangelos A. Coutsias, Chaok Seok, Ken A. Dill
2004	J	`jnl`	A kinematic view of loop closure. J. Comput. Chem. Evangelos A. Coutsias, Chaok Seok, Matthew P. Jacobson, Ken A. Dill
2004	J	`jnl`	Using quaternions to calculate RMSD. J. Comput. Chem. Evangelos A. Coutsias, Chaok Seok, Ken A. Dill
1999	J	`jnl`	Pseudospectral Solution of the Two-Dimensional Navier-Stokes Equations in a Disk. SIAM J. Sci. Comput. David J. Torres, Evangelos A. Coutsias
1996	J	`jnl`	An efficient spectral method for ordinary differential equations with rational function coefficients. Math. Comput. Evangelos A. Coutsias, Thomas M. Hagstrom, David J. Torres