Evan E. Eichler

24 papers B 5Misc 1Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
SVbyEye: a visual tool to characterize structural variation among whole-genome assemblies.
Bioinform.
David Porubsky, Xavi Guitart, Dongahn Yoo, Philip C. Dishuck, William T. Harvey, Evan E. Eichler
2024 J jnl
Identification and annotation of centromeric hypomethylated regions with CDR-Finder.
Bioinform.
Francesco Kumara Mastrorosa, Keisuke Oshima, Allison N. Rozanski, William T. Harvey, Evan E. Eichler, Glennis Logsdon
2023 J jnl
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads.
Bioinform.
Philip C. Dishuck, Allison N. Rozanski, Glennis Logsdon, David Porubsky, Evan E. Eichler
2022 J jnl
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps.
Bioinform.
Mitchell R. Vollger, Peter Kerpedjiev, Adam M. Phillippy, Evan E. Eichler
2018 J jnl
Strand-seq enables reliable separation of long reads by chromosome via expectation maximization.
Bioinform.
Maryam Ghareghani, David Porubsky, Ashley D. Sanders, Sascha Meiers, Evan E. Eichler, Jan O. Korbel, Tobias Marschall
2017 B conf
Resolving Multicopy Duplications de novo Using Polyploid Phasing.
RECOMB
Mark J. P. Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler
2017 J jnl
denovo-db: a compendium of human de novo variants.
Nucleic Acids Res.
Tychele Turner, Qian Yi, Niklas Krumm, John Huddleston, Kendra Hoekzema, Holly A. Stessman, Anna-Lisa Doebley, Raphael A. Bernier, Deborah A. Nickerson, Evan E. Eichler
2014 J jnl
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.
Bioinform.
Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp
2014 J jnl
The contribution of
Nat.
Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler
2014 J jnl
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.
Nucleic Acids Res.
Faraz Hach, Iman Sarrafi, Farhad Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2012 J jnl
Sensitive and fast mapping of di-base encoded reads.
Bioinform.
Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan
2011 J jnl
Sensitive and fast mapping of di-base encoded reads.
Bioinform.
Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan
2011 B conf
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes.
RECOMB
Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp
2010 J jnl
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
Bioinform.
Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp
2010 J jnl
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
Bioinform.
Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2010 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Can Alkan, Michael Brudno, Evan E. Eichler, Maricel G. Kann, Süleyman Cenk Sahinalp
2010 J jnl
Targeted interrogation of copy number variation using SCIMMkit.
Bioinform.
Troy Zerr, Gregory M. Cooper, Evan E. Eichler, Deborah A. Nickerson
2009 B conf
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.
RECOMB
Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2007 J jnl
Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data.
PLoS Comput. Biol.
Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Süleyman Cenk Sahinalp, Evan E. Eichler
2005 J jnl
Manipulating multiple sequence alignments via MaM and WebMaM.
Nucleic Acids Res.
Can Alkan, Eray Tüzün, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp
2004 J jnl
Identifying Uniformly Mutated Segments within Repeats.
J. Bioinform. Comput. Biol.
Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün
2004 J jnl
The Role of Unequal Crossover in Alpha-Satellite DNA Evolution: A Computational Analysis.
J. Comput. Biol.
Can Alkan, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp, Eray Tüzün
2002 B conf
Recent duplication, evolution and assembly of the human genome.
RECOMB
Evan E. Eichler
2002 B conf
Statistical Identification of Uniformly Mutated Segments within Repeats.
CPM
Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün