Eugenio Cinquemani

43 papers Journal 17Unranked 23
YearRankTypeTitle / Venue / Authors
2026 J jnl
Optimal control of vitamin-mediated algal-bacterial co-cultures under optogenetic regulation.
Autom.
Rand Asswad, Walid Djema, Olivier Bernard, Jean-Luc Gouzé, Eugenio Cinquemani
2025 — conf
Single-and multi-objective performance optimization of an algal-bacterial synthetic process.
CDC
Rand Asswad, Jean-Luc Gouzé, Eugenio Cinquemani
2024 — conf
Inference of Tree-Structured Auto-Regressive Models of Gene Expression Parameters from Generation-Snapshot Data.
ECC
Emrys Reginato, Aline Marguet, Eugenio Cinquemani
2024 — conf
Kalman-based approaches for online estimation of bioreactor dynamics from fluorescent reporter measurements.
ECC
Rand Asswad, Eugenio Cinquemani, Jean-Luc Gouzé
2024 — conf
Optimization of microalgae biosynthesis via controlled algal-bacterial symbiosis.
CDC
Rand Asswad, Walid Djema, Olivier Bernard, Jean-Luc Gouzé, Eugenio Cinquemani
2021 — ed.
Computational Methods in Systems Biology - 19th International Conference, CMSB 2021, Bordeaux, France, September 22-24, 2021, Proceedings
CMSB
Eugenio Cinquemani, Loïc Paulevé
2020 J jnl
Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs.
PLoS Comput. Biol.
Marco Mauri, Jean-Luc Gouzé, Hidde de Jong, Eugenio Cinquemani
2019 — book
Identification, estimation and control of gene expression and metabolic network dynamics. (Identification, estimation et contrôle des dynamiques d'expression génique et des réseaux métaboliques).
Eugenio Cinquemani
2019 J jnl
Inheritance and variability of kinetic gene expression parameters in microbial cells: modeling and inference from lineage tree data.
Bioinform.
Aline Marguet, Marc Lavielle, Eugenio Cinquemani
2019 — conf
Optimal control of bacterial growth for metabolite production: The role of timing and costs of control.
ECC
Eugenio Cinquemani, Francis Mairet, I. Yegorov, Hidde de Jong, Jean-Luc Gouzé
2019 J jnl
Stochastic reaction networks with input processes: Analysis and application to gene expression inference.
Autom.
Eugenio Cinquemani
2017 J jnl
Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data.
Bioinform.
Eugenio Cinquemani, Valérie Laroute, Muriel Cocaign-Bousquet, Hidde de Jong, Delphine Ropers
2016 — ed.
Hybrid Systems Biology - 5th International Workshop, HSB 2016, Grenoble, France, October 20-21, 2016, Proceedings
HSB
Eugenio Cinquemani, Alexandre Donzé
2016 — conf
On Observability and Reconstruction of Promoter Activity Statistics from Reporter Protein Mean and Variance Profiles.
HSB
Eugenio Cinquemani
2016 J jnl
What Population Reveals about Individual Cell Identity: Single-Cell Parameter Estimation of Models of Gene Expression in Yeast.
PLoS Comput. Biol.
Artémis Llamosi, Andrés M. González-Vargas, Cristian Versari, Eugenio Cinquemani, Giancarlo Ferrari-Trecate, Pascal Hersen, Grégory Batt
2015 J jnl
Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data.
PLoS Comput. Biol.
Diana Stefan, Corinne Pinel, Stéphane Pinhal, Eugenio Cinquemani, Johannes Geiselmann, Hidde de Jong
2015 J jnl
Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments.
Bioinform.
Maria Anna Rapsomaniki, Eugenio Cinquemani, Nickolaos-Nikiforos Giakoumakis, Panagiotis Kotsantis, John Lygeros, Zoi Lygerou
2015 — conf
Reconstructing Statistics of Promoter Switching from Reporter Protein Population Snapshot Data.
HSB
Eugenio Cinquemani
2015 — conf
Reconstruction of promoter activity statistics from reporter protein population snapshot data.
CDC
Eugenio Cinquemani
2014 — conf
Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach.
CMSB
Lakshmeesh R. M. Maruthi, Ilya Tkachev, Alfonso Carta, Eugenio Cinquemani, Pascal Hersen, Grégory Batt, Alessandro Abate
2013 — conf
Identification of biological models from single-cell data: A comparison between mixed-effects and moment-based inference.
ECC
Andres M. Gonzalez, Jannis Uhlendorf, Joe Schaul, Eugenio Cinquemani, Grégory Batt, Giancarlo Ferrari-Trecate
2013 — conf
State estimation for gene networks with intrinsic and extrinsic noise: A case study on E.coli arabinose uptake dynamics.
ECC
Alfonso Carta, Eugenio Cinquemani
2012 J jnl
Stochastic receding horizon control with output feedback and bounded controls.
Autom.
Peter Hokayem, Eugenio Cinquemani, Debasish Chatterjee, Federico Ramponi, John Lygeros
2011 J jnl
Convexity and convex approximations of discrete-time stochastic control problems with constraints.
Autom.
Eugenio Cinquemani, Mayank Agarwal, Debasish Chatterjee, John Lygeros
2011 J jnl
Identification of metabolic network models from incomplete high-throughput datasets.
Bioinform.
Sara Berthoumieux, Matteo Brilli, Hidde de Jong, Daniel Kahn, Eugenio Cinquemani
2010 J jnl
Identification of genetic network dynamics with unate structure.
Bioinform.
Riccardo Porreca, Eugenio Cinquemani, John Lygeros, Giancarlo Ferrari-Trecate
2010 — conf
Stochastic receding horizon control with output feedback and bounded control inputs.
CDC
Peter Hokayem, Eugenio Cinquemani, Debasish Chatterjee, Federico Ramponi, John Lygeros
2010 — conf
Structural identification of unate-like genetic network models from time-lapse protein concentration measurements.
CDC
Riccardo Porreca, Eugenio Cinquemani, John Lygeros, Giancarlo Ferrari-Trecate
2009 — conf
Canalizing structure of genetic network dynamics: modelling and identification via mixed-integer programming.
CDC
Eugenio Cinquemani, Riccardo Porreca, John Lygeros, Giancarlo Ferrari-Trecate
2009 — conf
Local Identification of Piecewise Deterministic Models of Genetic Networks.
HSCC
Eugenio Cinquemani, Andreas Milias-Argeitis, Sean Summers, John Lygeros
2009 — conf
On convexity of stochastic optimization problems with constraints.
ECC
Mayank Agarwal, Eugenio Cinquemani, Debasish Chatterjee, John Lygeros
2009 — conf
On stochastic control up to a hitting time.
CDC
Debasish Chatterjee, Eugenio Cinquemani, Georgios Chaloulos, John Lygeros
2009 — conf
Probabilistic regulation in stochastic hybrid systems subject to safety constraints.
ADHS
Debasish Chatterjee, Eugenio Cinquemani, John Lygeros
2008 — conf
Numerical analysis of FRAP experiments for DNA replication and repair.
CDC
Eugenio Cinquemani, Vassilis Roukos, Zoi Lygerou, John Lygeros
2008 J jnl
Stochastic dynamics of genetic networks: modelling and parameter identification.
Bioinform.
Eugenio Cinquemani, Andreas Milias-Argeitis, Sean Summers, John Lygeros
2008 J jnl
Subtilin Production by Bacillus Subtilis: Stochastic Hybrid Models and Parameter Identification.
IEEE Trans. Autom. Control.
Eugenio Cinquemani, Riccardo Porreca, Giancarlo Ferrari-Trecate, John Lygeros
2008 J jnl
Wavelet estimation by Bayesian thresholding and model selection.
Autom.
Eugenio Cinquemani, Gianluigi Pillonetto
2007 — conf
A general framework for the identification of jump Markov linear systems.
CDC
Eugenio Cinquemani, Riccardo Porreca, Giancarlo Ferrari-Trecate, John Lygeros
2007 — conf
Parameter identification for stochastic hybrid models of biological interaction networks.
CDC
Eugenio Cinquemani, Riccardo Porreca, Giancarlo Ferrari-Trecate, John Lygeros
2006 J jnl
A superposition principle for the Kalman filter.
Syst. Control. Lett.
Eugenio Cinquemani
2006 — conf
Identification of wood rings from sparse tomographic data.
CDC
Eugenio Cinquemani, Giorgio Picci
2006 J jnl
State estimation in stochastic hybrid Systems with sparse observations.
IEEE Trans. Autom. Control.
Eugenio Cinquemani, Mario Micheli
2004 — conf
Fault detection in a class of stochastic hybrid systems.
CDC
Eugenio Cinquemani, Mario Micheli, Giorgio Picci