Eugene W. Myers

87 papers A* 5A 1B 12C 1Journal 55Unranked 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
Evaluation of sequencing reads at scale using rdeval.
Bioinform.
Giulio Formenti, Bonhwang Koo, Marco Sollitto, Jennifer Balacco, Nadolina Brajuka, Richard Burhans, Erick Duarte, Alice Giani, Kirsty McCaffrey, Jack A. Medico, Eugene W. Myers, Patrik Smeds, Anton Nekrutenko, Erich D. Jarvis
2023 J jnl
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
BMC Bioinform.
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy
2022 — conf
Estimation of Optical Aberrations in 3D Microscopic Bioimages.
ICFSP
Kira Vinogradova, Eugene W. Myers
2022 J jnl
Estimation of Optical Aberrations in 3D Microscopic Bioimages.
CoRR
Kira Vinogradova, Eugene W. Myers
2021 J jnl
Finding long tandem repeats in long noisy reads.
Bioinform.
Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers
2020 J jnl
Fast and accurate aberration estimation from 3D bead images using convolutional neural networks.
CoRR
Debayan Saha, Uwe Schmidt, Qinrong Zhang, Aurelien Barbotin, Qi Hu, Na Ji, Martin J. Booth, Martin Weigert, Eugene W. Myers
2018 J jnl
Biobeam - Multiplexed wave-optical simulations of light-sheet microscopy.
PLoS Comput. Biol.
Martin Weigert, Kaushikaram Subramanian, Sebastian T. Bundschuh, Eugene W. Myers, Moritz Kreysing
2018 J jnl
The genome of
Nat.
Markus A. Grohme, Siegfried Schloissnig, Andrei Rozanski, Martin Pippel, George R. Young, Sylke Winkler, Holger Brandl, Ian Henry, Andreas Dahl, Sean Powell, Michael Hiller, Eugene W. Myers, Jochen C. Rink
2017 A* conf
Efficient Algorithms for Moral Lineage Tracing.
ICCV
Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres
2017 J jnl
Efficient Algorithms for Moral Lineage Tracing.
CoRR
Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres
2017 J jnl
PreMosa: extracting 2D surfaces from 3D microscopy mosaics.
Bioinform.
Corinna Blasse, Stephan Saalfeld, Raphaël Etournay, Andreas Sagner, Suzanne Eaton, Eugene W. Myers
2016 J jnl
A history of DNA sequence assembly.
it Inf. Technol.
Eugene W. Myers
2016 A conf
Mapping Auto-context Decision Forests to Deep ConvNets for Semantic Segmentation.
BMVC
David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother
2016 A* conf
Moral Lineage Tracing.
CVPR
Florian Jug, Evgeny Levinkov, Corinna Blasse, Eugene W. Myers, Bjoern Andres
2015 J jnl
BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.
Neuroinformatics
Yinan Wan, Fuhui Long, Lei Qu, Hang Xiao, Michael Hawrylycz, Eugene W. Myers, Hanchuan Peng
2015 J jnl
Moral Lineage Tracing.
CoRR
Florian Jug, Evgeny Levinkov, Corinna Blasse, Eugene W. Myers, Bjoern Andres
2015 J jnl
Relating Cascaded Random Forests to Deep Convolutional Neural Networks for Semantic Segmentation.
CoRR
David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother
2013 J jnl
Fast and robust optical flow for time-lapse microscopy using super-voxels.
Bioinform.
Fernando Amat, Eugene W. Myers, Philipp J. Keller
2013 J jnl
Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging.
BMC Bioinform.
Saket Navlakha, Parvez Ahammad, Eugene W. Myers
2012 J jnl
Automated Tracking of Whiskers in Videos of Head Fixed Rodents.
PLoS Comput. Biol.
Nathan G. Clack, Daniel H. O'Connor, Daniel Huber, Leopoldo T. Petreanu, Andrew Hires, Simon Peron, Karel Svoboda, Eugene W. Myers
2011 — conf
3D Neuron Tip Detection in Volumetric Microscopy Images.
BIBM
Min Liu, Hanchuan Peng, Amit K. Roy-Chowdhury, Eugene W. Myers
2011 J jnl
Anisotropic path searching for automatic neuron reconstruction.
Medical Image Anal.
Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng
2011 J jnl
Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models.
Neuroinformatics
Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers
2011 J jnl
Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions.
Neuroinformatics
Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers
2011 J jnl
Simultaneous recognition and segmentation of cells: application in
Bioinform.
Lei Qu, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers, Hanchuan Peng
2010 J jnl
Automated tracking and analysis of centrosomes in early
Bioinform.
Steffen Jaensch, Markus Decker, Anthony A. Hyman, Eugene W. Myers
2010 — conf
Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching.
MICCAI (2)
Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng
2009 J jnl
VANO: a volume-object image annotation system.
Bioinform.
Hanchuan Peng, Fuhui Long, Eugene W. Myers
2008 J jnl
Straightening
Bioinform.
Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers
2007 — conf
Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans.
ISBI
Fuhui Long, Hanchuan Peng, Eugene W. Myers
2007 — conf
Straightening Worm Images.
ISBI
Hanchuan Peng, Fuhui Long, Eugene W. Myers
2007 J jnl
Two algorithms for LCS Consecutive Suffix Alignment.
J. Comput. Syst. Sci.
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
2006 — conf
Clustering gene expression patterns of fly embryos.
ISBI
Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers
2006 J jnl
Efficient
J. Comput. Biol.
Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
2006 — conf
Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers.
ISMB (Supplement of Bioinformatics)
Tien-ho Lin, Eugene W. Myers, Eric P. Xing
2005 — conf
A motif-based framework for recognizing sequence families.
ISMB (Supplement of Bioinformatics)
Roded Sharan, Eugene W. Myers
2005 B conf
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length.
RECOMB
Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
2005 — conf
PILER: identification and classification of genomic repeats.
ISMB (Supplement of Bioinformatics)
Robert C. Edgar, Eugene W. Myers
2005 — conf
The fragment assembly string graph.
ECCB/JBI
Eugene W. Myers
2004 B conf
Comparing
RECOMB
Hanchuan Peng, Eugene W. Myers
2004 B conf
Two Algorithms for LCS Consecutive Suffix Alignment.
CPM
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
2004 — conf
Whole Genome Sequencing, Comparative Genomics, and Systems Biology.
CSB
Eugene W. Myers
2002 J jnl
The greedy path-merging algorithm for contig scaffolding.
J. ACM
Daniel H. Huson, Knut Reinert, Eugene W. Myers
2001 C conf
Comparing Assemblies Using Fragments and Mate-Pairs.
WABI
Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
2001 — conf
Design of a compartmentalized shotgun assembler for the human genome.
ISMB (Supplement of Bioinformatics)
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
2001 B conf
The greedy path-merging algorithm for sequence assembly.
RECOMB
Daniel H. Huson, Knut Reinert, Eugene W. Myers
1999 B conf
Algorithms for whole genome shotgun sequencing.
RECOMB
Eric L. Anson, Eugene W. Myers
1998 J jnl
Identifying Satellites and Periodic Repetitions in Biological Sequences.
J. Comput. Biol.
Marie-France Sagot, Eugene W. Myers
1998 B conf
Identifying satellites in nucleic acid sequences.
RECOMB
Marie-France Sagot, Eugene W. Myers
1998 J jnl
Incremental String Comparison.
SIAM J. Comput.
Gad M. Landau, Eugene W. Myers, Jeanette P. Schmidt
1998 B conf
Reporting Exact and Approximate Regular Expression Matches.
CPM
Eugene W. Myers, Paulo Oliva, Katia S. Guimarães
1998 J jnl
Xlandscape: the graphical display of word frequencies in sequences.
Bioinform.
Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo
1997 J jnl
Algorithms for Computing and Integrating Physical Maps Using Unique Probes.
J. Comput. Biol.
Mudita Jain, Eugene W. Myers
1997 B conf
Algorithms for computing and integrating physical maps using unique probes.
RECOMB
Mudita Jain, Eugene W. Myers
1997 J jnl
ReAligner: A Program for Refining DNA Sequence Multi-Alignments.
J. Comput. Biol.
Eric L. Anson, Eugene W. Myers
1997 B conf
ReAligner: a program for refining DNA sequence multi-alignments.
RECOMB
Eric L. Anson, Eugene W. Myers
1996 J jnl
A Subquadratic Algorithm for Approximate Limited Expression Matching.
Algorithmica
Sun Wu, Udi Manber, Eugene W. Myers
1996 J jnl
An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score.
SIAM J. Comput.
Sampath Kannan, Eugene W. Myers
1996 B ed.
Combinatorial Pattern Matching, 7th Annual Symposium, CPM 96, Laguna Beach, California, USA, June 10-12, 1996, Proceedings
CPM
Daniel S. Hirschberg, Eugene W. Myers
1995 J jnl
A Note on Scoring Clones Given a Probe Ordering.
J. Comput. Biol.
Mudita Jain, Eugene W. Myers
1995 J jnl
A Subquadratic Algorithm for Approximate Regular Expression Matching.
J. Algorithms
Sun Wu, Udi Manber, Eugene W. Myers
1995 J jnl
Approximate Regular Expression Pattern Matching with Concave Gap Penalties.
Algorithmica
James R. Knight, Eugene W. Myers
1995 J jnl
Combinatiorial Algorithms for DNA Sequence Assembly.
Algorithmica
John D. Kececioglu, Eugene W. Myers
1995 J jnl
Guest Editor's Foreword: Special Issue on Computational Molecular Biology.
Algorithmica
Eugene W. Myers
1995 J jnl
Super-Pattern Matching.
Algorithmica
James R. Knight, Eugene W. Myers
1995 J jnl
Toward Simplifying and Accurately Formulating Fragment Assembly.
J. Comput. Biol.
Eugene W. Myers
1994 J jnl
A Sublinear Algorithm for Approximate Keyword Searching.
Algorithmica
Eugene W. Myers
1993 B conf
An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score.
CPM
Sampath Kannan, Eugene W. Myers
1993 J jnl
Suffix Arrays: A New Method for On-Line String Searches.
SIAM J. Comput.
Udi Manber, Eugene W. Myers
1992 J jnl
A Four Russians Algorithm for Regular Expression Pattern Matching.
J. ACM
Eugene W. Myers
1992 B conf
Approximate Regular Expression Pattern Matching with Concave Gap Penalties.
CPM
James R. Knight, Eugene W. Myers
1989 J jnl
Row Replacement Algorithms for Screen Editors.
ACM Trans. Program. Lang. Syst.
Eugene W. Myers, Webb Miller
1988 J jnl
A Simple Row-replacement Method.
Softw. Pract. Exp.
Webb Miller, Eugene W. Myers
1988 J jnl
A software tool for finding locally optimal alignments in protein and nucleic acid sequences.
Comput. Appl. Biosci.
J. D. Hall, Eugene W. Myers
1988 J jnl
Optimal alignments in linear space.
Comput. Appl. Biosci.
Eugene W. Myers, Webb Miller
1987 J jnl
An Editor for Revision Control.
ACM Trans. Program. Lang. Syst.
Christopher W. Fraser, Eugene W. Myers
1986 J jnl
An O(ND) Difference Algorithm and Its Variations.
Algorithmica
Eugene W. Myers
1986 J jnl
Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences.
Nucleic Acids Res.
Eugene W. Myers, David W. Mount
1986 J jnl
Side-effects in Automatic File Updating.
Softw. Pract. Exp.
Webb Miller, Eugene W. Myers
1985 J jnl
A File Comparison Program.
Softw. Pract. Exp.
Webb Miller, Eugene W. Myers
1985 J jnl
An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem.
SIAM J. Comput.
Eugene W. Myers
1984 — conf
Analyzing and compressing assembly code.
SIGPLAN Symposium on Compiler Construction
Christopher W. Fraser, Eugene W. Myers, Alan L. Wendt
1984 A* conf
Efficient Applicative Data Types.
POPL
Eugene W. Myers
1983 J jnl
An Applicative Random-Access Stack.
Inf. Process. Lett.
Eugene W. Myers
1981 A* conf
A Precise Interprocedural Data Flow Algorithm.
POPL
Eugene W. Myers
1981 A* conf
BIGMAC II: A FORTRAN Language Augmentation Tool.
ICSE
Eugene W. Myers, Leon J. Osterweil
1978 J jnl
Finding All Spanning Trees of Directed and Undirected Graphs.
SIAM J. Comput.
Harold N. Gabow, Eugene W. Myers