Eroma Abeysinghe

34 papers B 1Misc 1Journal 4Unranked 28

Year	Rank	Type	Title / Venue / Authors
2024	—	`conf`	Enhancing Research Productivity: Seamless Integration of Personal Devices and HPC Resources with the Cybershuttle Notebook Gateway. PEARC Yasith Jayawardana, Dimuthu Wannipurage, Eroma Abeysinghe, Suresh Marru
2024	J	`jnl`	Python/NEURON code for simulating biophysically realistic thalamocortical dynamics during sleep. Softw. Impacts Christian G. Fink, Pavel Sanda, Logan Bayer, Eroma Abeysinghe, Maxim Bazhenov, Giri P. Krishnan
2023	—	`conf`	Airavata Metascheduler: A Reliable, Fault Tolerant, and Resource-Aware Job Scheduling Service. PEARC Isuru Ranawaka, Eroma Abeysinghe, Dimuthu Wannipurage, Dinuka De Silva, Emre H. Brookes, Suresh Marru, Marcus Christie, Sudhakar Pamidighantam, Marlon E. Pierce
2023	—	`conf`	Cybershuttle: An End-to-End Cyberinfrastructure Continuum to Accelerate Discovery in Science and Engineering. PEARC Suresh Marru, Marlon E. Pierce, Beth Plale, Sudhakar Pamidighantam, Dimuthu Wannipurage, Marcus Christie, Isuru Ranawaka, Eroma Abeysinghe, Rob Quick, Emad Tajkhorshid, Seid Koric, Jim Basney, Mariano Spivak, Barry Isralewitz, Rafael C. Bernardi, Diego Enry Barreto Gomes, Giri P. Krishnan, Maxim Bazhenov, Shava Smallen, Amit Majumdar, Anton Arkhipov, Kael Dai, Xiao-Ping Liu, Kenneth Yoshimoto
2023	—	`conf`	Defining a Cyberinfrastructure for Plasma Science and Space Weather Simulations. PEARC Eroma Abeysinghe, Cameron W. Smith, Liang Wang, James Juno, Matthew McCall, Marlon E. Pierce, Mark S. Shephard
2022	—	`conf`	Building the RNAMake Gateway on PATh: a Student-Led Design Project. PEARC Dinuka De Silva, Derek Weitzel, Joseph Yesselman, Marcus Christie, Robert Quick, Eroma Abeysinghe, Marlon E. Pierce
2022	J	`jnl`	Experiences with managing data parallel computational workflows for High-throughput Fragment Molecular Orbital (FMO) Calculations. CoRR Dimuthu Wannipurage, Indrajit Deb, Eroma Abeysinghe, Sudhakar Pamidighantam, Suresh Marru, Marlon E. Pierce, Aaron T. Frank
2022	—	`conf`	SimVascular Gateway for Education and Research. PEARC Justin Tran, Eroma Abeysinghe, John F. LaDisa Jr., Alison L. Marsden, Marlon E. Pierce
2021	J	`jnl`	A Multi-Protocol, Secure, and Dynamic Data Storage Integration Frameworkfor Multi-tenanted Science Gateway Middleware. CoRR Dimuthu Wannipurage, Isuru Ranawaka, Eroma Abeysinghe, Marcus Christie, Suresh Marru, Marlon E. Pierce
2021	B	`conf`	User-Centric Design and Evolvable Architecture for Science Gateways: A Case Study. CCGRID Suresh Marru, Tanya Kuruvilla, Eroma Abeysinghe, Donald F. McMullen, Marlon E. Pierce, David Gene Morgan, Steven L. Tait, Roger W. Innes
2020	—	`conf`	A Science Gateway for Simulating the Economics of Carbon Sequestration Technologies: SimCCS2.0. PEARC Sudhakar Pamidighantam, Jun Wang, Marcus Christie, Eroma Abeysinghe, Kevin M. Ellett, Ryan Kammer, Sean Yaw, Richard S. Middleton, Brendan A. Hoover
2020	—	`conf`	An extensible Django-based web portal for Apache Airavata. PEARC Marcus Christie, Suresh Marru, Eroma Abeysinghe, Dimuthu Upeksha, Sudhakar Pamidighantam, Stephen Paul Adithela, Eldho Mathulla, Aarushi Bisht, Shivam Rastogi, Marlon E. Pierce
2020	—	`conf`	FutureWater Indiana: A science gateway for spatio-temporal modeling of water in Wabash basin with a focus on climate change. PEARC Jennifer R. Dierauer, Chen Zhu, Lei Gong, Alan Walsh, Sudhakar Pamidighantam, Jun Wang, Marcus Christie, Eroma Abeysinghe
2020	J	`jnl`	Managing authentication and authorization in distributed science gateway middleware. Future Gener. Comput. Syst. Marcus A. Christie, Anuj Bhandar, Supun Nakandala, Suresh Marru, Eroma Abeysinghe, Sudhakar Pamidighantam, Marlon E. Pierce
2020	—	`conf`	Online Single-cell RNA-seq Data Denoising with Transfer Learning. PEARC Bowei Kang, Eroma Abeysinghe, Divyansh Agarwal, Quanli Wang, Sudhakar Pamidighantam, Mo Huang, Nancy Ruonan Zhang, Jingshu Wang
2020	—	`conf`	TopPIC Gateway: A Web Gateway for Top-Down Mass Spectrometry Data Interpretation. PEARC In Kwon Choi, Eroma Abeysinghe, Eric Coulter, Suresh Marru, Marlon E. Pierce, Xiaowen Liu
2019	—	`conf`	Experiences from scaling scale Science Gateway operations. PEARC Suresh Marru, Marlon E. Pierce, Eroma Abeysinghe, Sudhakar Pamidighantam, Marcus Christie, Dimuthu Wannipurage
2019	—	`conf`	Implementing a Flexible, Fault Tolerant Job Management System for Science Gateways. PEARC Dimuthu Wannipurage, Suresh Marru, Marlon E. Pierce, Eroma Abeysinghe, Sudhakar Pamidighantam, Marcus Christie, Gourav Shenoy, Ajinkya Dhamnaskar, Lahiru Jayathilaka
2019	—	`conf`	InterACTWEL Science Gateway for Adaptation Planning in Food-Energy-Water Sectors of Local Communities. PEARC Meghna Babbar-Sebens, Samuel J. Rivera, Eroma Abeysinghe, Suresh Marru, Marlon E. Pierce, Eric Coulter, Majid Farahani, Dimuthu Wannipurage, Marcus Christie
2019	—	`conf`	LSU Computational System Biology Gateway for Education. PEARC Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce
2019	—	`conf`	The Distant Reader: Tool for Reading. PEARC Eric Lease Morgan, Eroma Abeysinghe, Sudhakar Pamidighantam, Eric Coulter, Suresh Marru, Marlon E. Pierce
2019	—	`conf`	The USD Science Gateway: A Bridge Between Research and Advanced Computing. PEARC Adison A. Kleinsasser, Sudhakar Pamidighantam, Douglas M. Jennewein, Joseph D. Madison, Marcus Christie, Eroma Abeysinghe, Suresh Marru, Marlon E. Pierce
2018	—	`conf`	A New Science Gateway to Provide Decision Support on Carbon Capture and Storage Technologies. PEARC Yinzhi Wang, Sudhakar Pamidighantam, Sean Yaw, Eroma Abeysinghe, Suresh Marru, Marcus Christie, Kevin M. Ellett, Marlon E. Pierce, Richard S. Middleton
2018	—	`conf`	Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata. PEARC Zhong Wang, Marcus A. Christie, Eroma Abeysinghe, Tinyi Chu, Suresh Marru, Marlon E. Pierce, Charles G. Danko
2018	—	`conf`	PHASTA Science Gateway for High Performance Computational Fluid Dynamics. PEARC Cameron W. Smith, Eroma Abeysinghe, Suresh Marru, Kenneth E. Jansen
2018	—	`conf`	Science Gateway Implementation at the University of South Dakota: Applications in Research and Education. PEARC Joseph D. Madison, Eroma Abeysinghe, Sudhakar Pamidighantam, Suresh Marru, Marcus Christie, Douglas M. Jennewein, Marlon E. Pierce
2018	—	`conf`	Searching the Sequence Read Archive using Jetstream and Wrangler. PEARC Kyle Levi, Mats Rynge, Eroma Abeysinghe, Robert A. Edwards
2018	—	`conf`	Simplifying Access to Campus Resources at Southern Illinois University with a Science Gateway. PEARC Sai Susheel Sunkara, Chet Langin, Marlon E. Pierce, Eroma Abeysinghe, Sudhakar Pamidighantam, Suresh Marru
2018	—	`conf`	Supporting Science Gateways Using Apache Airavata and SciGaP Services. PEARC Marlon E. Pierce, Suresh Marru, Eroma Abeysinghe, Sudhakar Pamidighantam, Marcus Christie, Dimuthu Wannipurage
2018	—	`conf`	The CSBG - LSU Gateway: Web based Hosted Gateway for Computational System Biology Application Tools from Louisiana State University. PEARC Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce
2018	—	`conf`	Using a Science Gateway to Deliver SimVascular Software as a Service for Classroom Instruction. PEARC Nathan M. Wilson, Suresh Marru, Eroma Abeysinghe, Marcus A. Christie, Gabriel D. Maher, Adam R. Updegrove, Marlon E. Pierce, Alison L. Marsden
2017	—	`conf`	The PHASTA Science Gateway: Web-based Execution of Adaptive Computational Fluid Dynamics Simulations. PEARC Cameron W. Smith, Eroma Abeysinghe
2016	—	`conf`	Anatomy of the SEAGrid Science Gateway. XSEDE Supun Nakandala, Sudhakar Pamidighantam, Shameera Yodage, Nipurn Doshi, Eroma Abeysinghe, Chathuri Peli Kankanamalage, Suresh Marru, Marlon E. Pierce
2016	Misc	`conf`	Community Science Exemplars in SEAGrid Science Gateway: Apache Airavata Based Implementation of Advanced Infrastructure. ICCS Sudhakar Pamidighantam, Supun Nakandala, Eroma Abeysinghe, Chathuri Wimalasena, Shameera Rathnayaka, Suresh Marru, Marlon E. Pierce