Erik Meijering

153 papers A 2B 3Misc 3Journal 93Unranked 52

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A survey on deep learning for 2D and 3D human pose estimation. Artif. Intell. Rev. Marsha Mariya Kappan, Eduardo Benítez Sandoval, Erik Meijering, Francisco Cruz
2026	J	`jnl`	CiSeg: Unsupervised Cross-Modality Adaptation for 3D Medical Image Segmentation via Causal Intervention. IEEE Trans. Medical Imaging Peiqing Lv, Yaonan Wang, Min Liu, Zhe Zhang, Yunfeng Ma, Licheng Liu, Erik Meijering
2026	J	`jnl`	Curvi-Tracker: Curvilinear structure segmentation refinement by iterative tracking. Pattern Recognit. Zhan Heng, Maurice Pagnucco, Erik Meijering, Yang Song
2026	J	`jnl`	EPDiff: Erasure Perception Diffusion Model for Unsupervised Anomaly Detection in Preoperative Multimodal Images. IEEE Trans. Medical Imaging Jiazheng Wang, Min Liu, Wenting Shen, Renjie Ding, Yaonan Wang, Erik Meijering
2026	J	`jnl`	Leveraging Vision-Language Embeddings for Zero-Shot Learning in Histopathology Images. IEEE J. Biomed. Health Informatics Md Mamunur Rahaman, Ewan K. A. Millar, Erik Meijering
2025	J	`jnl`	A Survey on Multimodal Music Emotion Recognition. CoRR Rashini Liyanarachchi, Aditya Joshi, Erik Meijering
2025	J	`jnl`	A novel approach to skin lesion segmentation using transformer attention and focal modulation. Eng. Appl. Artif. Intell. Tariq Mahmood Khan, Dawn Lin, Shahzaib Iqbal, Erik Meijering
2025	—	`conf`	Accelerating Medical Image Analysis on Edge Devices: A Study with MobileOne Architecture. PerCom Workshops Dev Gala, Jinam Keniya, Harsha Varun Marisetty, Manik Gupta, Tanmay Tulsidas Verlekar, Erik Meijering, Ashwin Srinivasan
2025	J	`jnl`	Edge deep learning in computer vision and medical diagnostics: a comprehensive survey. Artif. Intell. Rev. Yiwen Xu, Tariq M. Khan, Yang Song, Erik Meijering
2025	Misc	`conf`	Enhancing Change Detection in Remote Sensing: Integrating Synthetic Data with Semi-Supervised Learning. ICASSP Yafei Luo, Erik Meijering, Yang Song
2025	J	`jnl`	GRAPHITE: Graph-Based Interpretable Tissue Examination for Enhanced Explainability in Breast Cancer Histopathology. CoRR Raktim Kumar Mondol, Ewan K. A. Millar, Peter H. Graham, Lois Browne, Arcot Sowmya, Erik Meijering
2025	J	`jnl`	GRAPHITE: Graph-based interpretable tissue examination for enhanced explainability in breast cancer histopathology. Comput. Biol. Medicine Raktim Kumar Mondol, Ewan K. A. Millar, Peter H. Graham, Lois Browne, Arcot Sowmya, Erik Meijering
2025	J	`jnl`	Improving cross-domain generalizability of medical image segmentation using uncertainty and shape-aware continual test-time domain adaptation. Medical Image Anal. Jiayi Zhu, Bart Bolsterlee, Yang Song, Erik Meijering
2025	J	`jnl`	Leveraging Vision-Language Embeddings for Zero-Shot Learning in Histopathology Images. CoRR Md Mamunur Rahaman, Ewan K. A. Millar, Erik Meijering
2025	J	`jnl`	MBUNeXt: Multibranch Encoder Aggregation Network Based on Layer-Fusion Strategy for Multimodal Brain Tumor Segmentation. IEEE Trans. Neural Networks Learn. Syst. Qinghao Liu, Yuehao Zhu, Min Liu, Zhao Yao, Yaonan Wang, Erik Meijering
2025	J	`jnl`	Multiscope topology learning with conditional updating for airway segmentation. Pattern Anal. Appl. Yan Hu, Erik Meijering, Yang Song
2025	J	`jnl`	Multiview Integration Network for Multitask Robotic Surgical Scene Analysis. IEEE Trans. Instrum. Meas. Wenting Shen, Yaonan Wang, Min Liu, Jiazheng Wang, Renjie Ding, Zhe Zhang, Erik Meijering
2025	J	`jnl`	TBConvL-Net: A hybrid deep learning architecture for robust medical image segmentation. Pattern Recognit. Shahzaib Iqbal, Tariq Mahmood Khan, Syed Saud Naqvi, Asim Naveed, Erik Meijering
2024	—	`conf`	AC-UNet: Adaptive Connection UNet for White Matter Tract Segmentation Through Neural Architecture Search. ISBI Yanming Zhu, Ari Tchetchenian, Xuefei Yin, Alan Wee-Chung Liew, Yang Song, Erik Meijering
2024	J	`jnl`	Attention-Enhanced Lightweight Hourglass Network for Human Pose Estimation. CoRR Marsha Mariya Kappan, Eduardo Benítez Sandoval, Erik Meijering, Francisco Cruz
2024	J	`jnl`	BioFusionNet: Deep Learning-Based Survival Risk Stratification in ER+ Breast Cancer Through Multifeature and Multimodal Data Fusion. CoRR Raktim Kumar Mondol, Ewan K. A. Millar, Arcot Sowmya, Erik Meijering
2024	J	`jnl`	BioFusionNet: Deep Learning-Based Survival Risk Stratification in ER+ Breast Cancer Through Multifeature and Multimodal Data Fusion. IEEE J. Biomed. Health Informatics Raktim Kumar Mondol, Ewan K. A. Millar, Arcot Sowmya, Erik Meijering
2024	J	`jnl`	Brain Image Segmentation for Ultrascale Neuron Reconstruction via an Adaptive Dual-Task Learning Network. IEEE Trans. Medical Imaging Min Liu, Shuhan Wu, Runze Chen, Zhuangdian Lin, Yaonan Wang, Erik Meijering
2024	J	`jnl`	Deep Joint Denoising and Detection for Enhanced Intracellular Particle Analysis. CoRR Yao Yao, Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Erik Meijering
2024	J	`jnl`	Deep multimodal saliency parcellation of cerebellar pathways: linking microstructure and individual function through explainable multitask learning. CoRR Ari Tchetchenian, Leo R. Zekelman, Yuqian Chen, Jarrett Rushmore, Fan Zhang, Edward H. Yeterian, Nikos Makris, Yogesh Rathi, Erik Meijering, Yang Song, Lauren J. O'Donnell
2024	J	`jnl`	ESDMR-Net: A lightweight network with expand-squeeze and dual multiscale residual connections for medical image segmentation. Eng. Appl. Artif. Intell. Tariq Mahmood Khan, Syed Saud Naqvi, Erik Meijering
2024	—	`conf`	Histopathology Image Classification Using Supervised Contrastive Deep Learning. ISBI Md Mamunur Rahaman, Ewan K. A. Millar, Erik Meijering
2024	J	`jnl`	Hybrid dual mean-teacher network with double-uncertainty guidance for semi-supervised segmentation of magnetic resonance images. Comput. Medical Imaging Graph. Jiayi Zhu, Bart Bolsterlee, Brian V. Y. Chow, Yang Song, Erik Meijering
2024	B	`conf`	LMBF-Net: A Lightweight Multipath Bidirectional Focal Attention Network For Multifeatures Segmentation. ICIP Tariq M. Khan, Shahzaib Iqbal, Syed Saud Naqvi, Imran Razzak, Erik Meijering
2024	J	`jnl`	LMBF-Net: A Lightweight Multipath Bidirectional Focal Attention Network for Multifeatures Segmentation. CoRR Tariq Mahmood Khan, Shahzaib Iqbal, Syed Saud Naqvi, Imran Razzak, Erik Meijering
2024	J	`jnl`	LSKANet: Long Strip Kernel Attention Network for Robotic Surgical Scene Segmentation. IEEE Trans. Medical Imaging Min Liu, Yubin Han, Jiazheng Wang, Can Wang, Yaonan Wang, Erik Meijering
2024	J	`jnl`	MM-SurvNet: Deep Learning-Based Survival Risk Stratification in Breast Cancer Through Multimodal Data Fusion. CoRR Raktim Kumar Mondol, Ewan K. A. Millar, Arcot Sowmya, Erik Meijering
2024	—	`conf`	MM-Survnet: Deep Learning-Based Survival Risk Stratification in Breast Cancer Through Multimodal Data Fusion. ISBI Raktim Kumar Mondol, Ewan K. A. Millar, Arcot Sowmya, Erik Meijering
2024	A	`conf`	Refining Airway Segmentation Through Breakage Filling and Leakage Reduction Using Point Clouds. IROS Yan Hu, Erik Meijering, Yang Song
2024	—	`conf`	Semi-Supervised Variational Autoencoder for Cell Feature Extraction In Multiplexed Immunofluorescence Images. ISBI Piumi Sandarenu, Julia Chen, Iveta Slapetova, Lois Browne, Peter H. Graham, Alexander Swarbrick, Ewan K. A. Millar, Yang Song, Erik Meijering
2024	J	`jnl`	Semi-supervised variational autoencoder for cell feature extraction in multiplexed immunofluorescence images. CoRR Piumi Sandarenu, Julia Chen, Iveta Slapetova, Lois Browne, Peter H. Graham, Alexander Swarbrick, Ewan K. A. Millar, Yang Song, Erik Meijering
2024	J	`jnl`	SwinPA-Net: Swin Transformer-Based Multiscale Feature Pyramid Aggregation Network for Medical Image Segmentation. IEEE Trans. Neural Networks Learn. Syst. Hao Du, Jiazheng Wang, Min Liu, Yaonan Wang, Erik Meijering
2024	J	`jnl`	TAFM-Net: A Novel Approach to Skin Lesion Segmentation Using Transformer Attention and Focal Modulation. CoRR Tariq Mahmood Khan, Dawn Lin, Shahzaib Iqbal, Erik Meijering
2024	J	`jnl`	TBConvL-Net: A Hybrid Deep Learning Architecture for Robust Medical Image Segmentation. CoRR Shahzaib Iqbal, Tariq Mahmood Khan, Syed Saud Naqvi, Asim Naveed, Erik Meijering
2024	—	`conf`	Vascular Topology Rectification Network for Automated Retinal Artery/Vein Segmentation. ISBI Zhan Heng, Maurice Pagnucco, Erik Meijering, Yang Song
2023	J	`jnl`	3D Soma Detection in Large-Scale Whole Brain Images via a Two-Stage Neural Network. IEEE Trans. Medical Imaging Xiaodan Wei, Qinghao Liu, Min Liu, Yaonan Wang, Erik Meijering
2023	J	`jnl`	A Compound Loss Function With Shape Aware Weight Map for Microscopy Cell Segmentation. IEEE Trans. Medical Imaging Yanming Zhu, Xuefei Yin, Erik Meijering
2023	J	`jnl`	Branch Aggregation Attention Network for Robotic Surgical Instrument Segmentation. IEEE Trans. Medical Imaging Wenting Shen, Yaonan Wang, Min Liu, Jiazheng Wang, Renjie Ding, Zhe Zhang, Erik Meijering
2023	J	`jnl`	Breast Cancer Histopathology Image based Gene Expression Prediction using Spatial Transcriptomics data and Deep Learning. CoRR Md Mamunur Rahaman, Ewan K. A. Millar, Erik Meijering
2023	J	`jnl`	Cancer Survival Prediction From Whole Slide Images With Self-Supervised Learning and Slide Consistency. IEEE Trans. Medical Imaging Lei Fan, Arcot Sowmya, Erik Meijering, Yang Song
2023	J	`jnl`	Deep Learning in Diverse Intelligent Sensor Based Systems. Sensors Yanming Zhu, Min Wang, Xuefei Yin, Jue Zhang, Erik Meijering, Jiankun Hu
2023	J	`jnl`	Deep learning in mesoscale brain image analysis: A review. Comput. Biol. Medicine Runze Chen, Min Liu, Weixun Chen, Yaonan Wang, Erik Meijering
2023	J	`jnl`	ESDMR-Net: A Lightweight Network With Expand-Squeeze and Dual Multiscale Residual Connections for Medical Image Segmentation. CoRR Tariq Mahmood Khan, Syed Saud Naqvi, Erik Meijering
2023	J	`jnl`	FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare. CoRR Karim Lekadir, Aasa Feragen, Abdul Joseph Fofanah, Alejandro F. Frangi, Alena Buyx, Anais Emelie, Andrea Lara, Antonio R. Porras, An-Wen Chan, Arcadi Navarro, Ben Glocker, Benard Ohene Botwe, Bishesh Khanal, Brigit Beger, Carol C. Wu, Celia Cintas, Curtis P. Langlotz, Daniel Rueckert, Deogratias Mzurikwao, Dimitrios I. Fotiadis, Doszhan Zhussupov, Enzo Ferrante, Erik Meijering, Eva Weicken, Fabio A. González, Folkert W. Asselbergs, Fred W. Prior, Gabriel P. Krestin, Gary S. Collins, Geletaw Sahle Tegenaw, Georgios Kaissis, Gianluca Misuraca, Gianna Tsakou, Girish Dwivedi, Haridimos Kondylakis, Harsha Jayakody, Henry C. Woodruff, Hugo J. W. L. Aerts, Ian Walsh, Ioanna Chouvarda, Irène Buvat, Islem Rekik, James S. Duncan, Jayashree Kalpathy-Cramer, Jihad Zahir, Jinah Park, John Mongan, Judy W. Gichoya, Julia A. Schnabel, et al.
2023	J	`jnl`	Feature Enhancer Segmentation Network (FES-Net) for Vessel Segmentation. CoRR Tariq Mahmood Khan, Muhammad Arsalan, Shahzaib Iqbal, Imran Razzak, Erik Meijering
2023	Misc	`conf`	Feature Enhancer Segmentation Network (FES-Net)for Vessel Segmentation. DICTA Tariq Mahmood Khan, Muhammad Arsalan, Shahzaib Iqbal, Imran Razzak, Erik Meijering
2023	J	`jnl`	From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process. Mag. Selin Aviyente, Alejandro F. Frangi, Erik Meijering, Arrate Muñoz-Barrutia, Michael Liebling, Dimitri Van De Ville, Jean-Christophe Olivo-Marin, Jelena Kovacevic, Michael Unser
2023	J	`jnl`	Fully Elman Neural Network: A Novel Deep Recurrent Neural Network Optimized by an Improved Harris Hawks Algorithm for Classification of Pulmonary Arterial Wedge Pressure. CoRR Masoud Fetanat, Michael C. Stevens, Pankaj Jain, Christopher Hayward, Erik Meijering, Nigel H. Lovell
2023	J	`jnl`	Hybrid Dual Mean-Teacher Network With Double-Uncertainty Guidance for Semi-Supervised Segmentation of MRI Scans. CoRR Jiayi Zhu, Bart Bolsterlee, Brian V. Y. Chow, Yang Song, Erik Meijering
2023	J	`jnl`	IKD+: Reliable Low Complexity Deep Models For Retinopathy Classification. CoRR Shreyas Bhat Brahmavar, Rohit Rajesh, Tirtharaj Dash, Lovekesh Vig, Tanmay Tulsidas Verlekar, Md Mahmudul Hasan, Tariq Mahmood Khan, Erik Meijering, Ashwin Srinivasan
2023	B	`conf`	IKD+: Reliable Low Complexity Deep Models for Retinopathy Classification. ICIP Shreyas Bhat Brahmavar, Rohit Rajesh, Tirtharaj Dash, Lovekesh Vig, Tanmay Tulsidas Verlekar, Md Mahmudul Hasan, Tariq Mahmood Khan, Erik Meijering, Ashwin Srinivasan
2023	J	`jnl`	Imbalanced classification for protein subcellular localization with multilabel oversampling. Bioinform. Priyanka Rana, Arcot Sowmya, Erik Meijering, Yang Song
2023	—	`conf`	Large-Kernel Attention Network with Distance Regression and Topological Self-correction for Airway Segmentation. AI (1) Yan Hu, Erik Meijering, Yang Song
2023	—	`conf`	Membranous Urethral Reconstruction and Segmentation in Multiplanar T2W MRI Images. ISBI Kuruparan Shanmugalingam, Daniel Aaron Moses, Arcot Sowmya, Erik Meijering
2023	—	`conf`	Prostate Segmentation Using Multiparametric and Multiplanar Magnetic Resonance Images. MLMI@MICCAI (1) Kuruparan Shanmugalingam, Arcot Sowmya, Daniel Aaron Moses, Erik Meijering
2023	J	`jnl`	Simple and robust depth-wise cascaded network for polyp segmentation. Eng. Appl. Artif. Intell. Tariq Mahmood Khan, Muhammad Arsalan, Imran Razzak, Erik Meijering
2023	—	`conf`	Uncertainty and Shape-Aware Continual Test-Time Adaptation for Cross-Domain Segmentation of Medical Images. MICCAI (3) Jiayi Zhu, Bart Bolsterlee, Brian V. Y. Chow, Yang Song, Erik Meijering
2023	J	`jnl`	Understanding metric-related pitfalls in image analysis validation. CoRR Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
2023	J	`jnl`	hist2RNA: An efficient deep learning architecture to predict gene expression from breast cancer histopathology images. CoRR Raktim Kumar Mondol, Ewan K. A. Millar, Peter H. Graham, Lois Browne, Arcot Sowmya, Erik Meijering
2022	J	`jnl`	A 3D Tubular Flux Model for Centerline Extraction in Neuron Volumetric Images. IEEE Trans. Medical Imaging Xuan Wang, Min Liu, Yaonan Wang, Jiawang Fan, Erik Meijering
2022	—	`conf`	Attention Guided Deep Supervision Model for Prostate Segmentation in Multisite Heterogeneous MRI Data. MIDL Kuruparan Shanmugalingam, Arcot Sowmya, Daniel Aaron Moses, Erik Meijering
2022	J	`jnl`	Deep Learning in Biological Image and Signal Processing [From the Guest Editors]. IEEE Signal Process. Mag. Erik Meijering, Vince D. Calhoun, Gloria Menegaz, David J. Miller, Jong Chul Ye
2022	J	`jnl`	Deep-Learning-Based Automated Neuron Reconstruction From 3D Microscopy Images Using Synthetic Training Images. IEEE Trans. Medical Imaging Weixun Chen, Min Liu, Hao Du, Miroslav Radojevic, Yaonan Wang, Erik Meijering
2022	J	`jnl`	DeepRayburst for Automatic Shape Analysis of Tree-Like Structures in Biomedical Images. IEEE J. Biomed. Health Informatics Yi Jiang, Weixun Chen, Min Liu, Yaonan Wang, Erik Meijering
2022	—	`conf`	Fast FF-to-FFPE Whole Slide Image Translation via Laplacian Pyramid and Contrastive Learning. MICCAI (2) Lei Fan, Arcot Sowmya, Erik Meijering, Yang Song
2022	J	`jnl`	Fully Elman Neural Network: A Novel Deep Recurrent Neural Network Optimized by an Improved Harris Hawks Algorithm for Classification of Pulmonary Arterial Wedge Pressure. IEEE Trans. Biomed. Eng. Masoud Fetanat, Michael C. Stevens, Pankaj Jain, Christopher Hayward, Erik Meijering, Nigel H. Lovell
2022	—	`conf`	Hybrid Attentive Unet for Segmentation of Lower Leg Muscles and Bones From MRI Scans For Musculoskeletal Research. ISBI Jiayi Zhu, Bart Bolsterlee, Brian V. Y. Chow, Yang Song, Erik Meijering
2022	—	`conf`	Imbalanced Cell-Cycle Classification Using Wgan-Div and Mixup. ISBI Priyanka Rana, Arcot Sowmya, Erik Meijering, Yang Song
2022	J	`jnl`	MKIS-Net: A Light-Weight Multi-Kernel Network for Medical Image Segmentation. CoRR Tariq Mahmood Khan, Muhammad Arsalan, Antonio Robles-Kelly, Erik Meijering
2022	J	`jnl`	Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger
2022	—	`conf`	Neural Network Compression by Joint Sparsity Promotion and Redundancy Reduction. ICONIP (1) Tariq Mahmood Khan, Syed Saud Naqvi, Antonio Robles-Kelly, Erik Meijering
2022	J	`jnl`	Neural Network Compression by Joint Sparsity Promotion and Redundancy Reduction. CoRR Tariq Mahmood Khan, Syed Saud Naqvi, Antonio Robles-Kelly, Erik Meijering
2022	—	`conf`	Parallel Sinogram and Image Framework With Co-Training Strategy for Metal Artifact Reduction in Tooth Ct Images. ISBI Yan Hu, Yongsheng Pan, Yang Song, Erik Meijering, Zhiming Cui, Yue Zhao, Zhongxiang Ding, Min Zhu, Dinggang Shen
2022	J	`jnl`	Structure-Guided Segmentation for 3D Neuron Reconstruction. IEEE Trans. Medical Imaging Bo Yang, Min Liu, Yaonan Wang, Kang Zhang, Erik Meijering
2021	J	`jnl`	3D Neuron Microscopy Image Segmentation via the Ray-Shooting Model and a DC-BLSTM Network. IEEE Trans. Medical Imaging Yi Jiang, Weixun Chen, Min Liu, Yaonan Wang, Erik Meijering
2021	J	`jnl`	Automatic improvement of deep learning-based cell segmentation in time-lapse microscopy by neural architecture search. Bioinform. Yanming Zhu, Erik Meijering
2021	—	`conf`	Deep Representation Learning for Image-Based Cell Profiling. MLMI@MICCAI Wenzhao Wei, Sacha Haidinger, John G. Lock, Erik Meijering
2021	—	`conf`	Deformable Convolution and Semi-supervised Learning in Point Clouds for Aneurysm Classification and Segmentation. ICONIP (6) Yan Hu, Erik Meijering, Yong Xia, Yang Song
2021	J	`jnl`	Efficient 3D Junction Detection in Biomedical Images Based on a Circular Sampling Model and Reverse Mapping. IEEE J. Biomed. Health Informatics Lan Shen, Min Liu, Chao Wang, Changhao Guo, Erik Meijering, Yaonan Wang
2021	—	`conf`	Learning Visual Features by Colorization for Slide-Consistent Survival Prediction from Whole Slide Images. MICCAI (8) Lei Fan, Arcot Sowmya, Erik Meijering, Yang Song
2021	J	`jnl`	Leveraging Image Complexity in Macro-Level Neural Network Design for Medical Image Segmentation. CoRR Tariq Mahmood Khan, Syed Saud Naqvi, Erik Meijering
2021	—	`conf`	Multi-Label Classification Based On Subcellular Region-Guided Feature Description For Protein Localisation. ISBI Priyanka Rana, Erik Meijering, Arcot Sowmya, Yang Song
2021	J	`jnl`	Spherical-Patches Extraction for Deep-Learning-Based Critical Points Detection in 3D Neuron Microscopy Images. IEEE Trans. Medical Imaging Weixun Chen, Min Liu, Qi Zhan, Yinghui Tan, Erik Meijering, Miroslav Radojevic, Yaonan Wang
2020	—	`conf`	Automated Quantitative Analysis of Microglia in Bright-Field Images of Zebrafish. ISBI Samuël N. Geurts, Nynke Oosterhof, Laura E. Kuil, Herma C. van der Linde, Tjakko J. van Ham, Erik Meijering
2020	J	`jnl`	Deep-learning method for data association in particle tracking. Bioinform. Yao Yao, Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Erik Meijering
2020	—	`conf`	Neural Architecture Search for Microscopy Cell Segmentation. MLMI@MICCAI Yanming Zhu, Erik Meijering
2019	J	`jnl`	3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Trans. Medical Imaging Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
2019	J	`jnl`	Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning. Neuroinformatics Gadea Mata, Miroslav Radojevic, Carlos Fernandez-Lozano, Ihor Smal, Niels Werij, Miguel Morales, Erik Meijering, Julio Rubio
2019	J	`jnl`	Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation. Neuroinformatics Miroslav Radojevic, Erik Meijering
2019	J	`jnl`	Bayesian Polytrees With Learned Deep Features for Multi-Class Cell Segmentation. IEEE Trans. Image Process. Hamid Fehri, Ali Gooya, Yuanjun Lu, Erik Meijering, Simon A. Johnston, Alejandro F. Frangi
2019	—	`conf`	Facilitating Data Association In Particle Tracking Using Autoencoding And Score Matching. ISBI Ihor Smal, Yao Yao, Niels Galjart, Erik Meijering
2019	—	`conf`	Nerve Fiber Segmentation in Bright-Field Microscopy Images of Skin Biopsies Using Deep Learning. ISBI Herman Bergwerf, Malik Bechakra, Ihor Smal, Joost L. M. Jongen, Erik Meijering
2018	—	`conf`	Accurate estimation of intracellular dynamics and underlying spatial structures using hierarchical trajectory smoothing. ISBI Ihor Smal, Niels Galjart, Erik Meijering
2018	—	`conf`	Deep neural networks for data association in particle tracking. ISBI Yao Yao, Ihor Smal, Erik Meijering
2018	—	`conf`	Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks. ISBI Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
2018	J	`jnl`	Spotlight on Bioimaging and Signal Processing [In the Spotlight]. IEEE Signal Process. Mag. Erik Meijering, Arrate Muñoz-Barrutia
2017	J	`jnl`	Automated neuron tracing using probability hypothesis density filtering. Bioinform. Miroslav Radojevic, Erik Meijering
2017	—	`conf`	Gaussian processes for trajectory analysis in microtubule tracking applications. ISBI Ihor Smal, Sreya Basu, Laura Sayas, Niels Galjart, Erik Meijering
2017	—	`conf`	Neuron reconstruction from fluorescence microscopy images using sequential Monte Carlo estimation. ISBI Miroslav Radojevic, Erik Meijering
2016	—	`conf`	Automatic detection of neurons in high-content microscope images using machine learning approaches. ISBI Gadea Mata, Miroslav Radojevic, Ihor Smal, Miguel Morales, Erik Meijering, Julio Rubio
2016	J	`jnl`	Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. Neuroinformatics Miroslav Radojevic, Ihor Smal, Erik Meijering
2016	—	`conf`	Poisson Point Processes for Solving Stochastic Inverse Problems in Fluorescence Microscopy. ECCV Workshops (1) Ihor Smal, Erik Meijering
2015	—	`conf`	Advances and Challenges in Dynamic Bioimage Analysis. BIOSTEC Erik Meijering
2015	—	`conf`	Automated neuron morphology reconstruction using fuzzy-logic detection and Bayesian tracing algorithms. ISBI Miroslav Radojevic, Ihor Smal, Erik Meijering
2015	J	`jnl`	From DIADEM to BigNeuron. Neuroinformatics Hanchuan Peng, Erik Meijering, Giorgio A. Ascoli
2015	J	`jnl`	Quantitative Bioimaging: Signal Processing in Light Microscopy [From the Guest Editors]. IEEE Signal Process. Mag. Arrate Muñoz-Barrutia, Jelena Kovacevic, Michal Kozubek, Erik Meijering, Braham Parvin
2015	J	`jnl`	Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy. Medical Image Anal. Ihor Smal, Erik Meijering
2015	J	`jnl`	Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling. IEEE Signal Process. Mag. Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek
2014	J	`jnl`	A benchmark for comparison of cell tracking algorithms. Bioinform. Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
2014	Misc	`conf`	An adaptive distributed resampling algorithm with non-proportional allocation. ICASSP Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
2014	—	`conf`	Fuzzy logic based detection of neuron bifurcations in microscopy images. ISBI Miroslav Radojevic, Ihor Smal, Wiro J. Niessen, Erik Meijering
2013	J	`jnl`	PPF - A Parallel Particle Filtering Library. CoRR Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
2013	J	`jnl`	Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. CoRR Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
2013	—	`conf`	Super-Resolution Reconstruction Using Cross-Scale Self-similarity in Multi-slice MRI. MICCAI (3) Esben Plenge, Dirk H. J. Poot, Wiro J. Niessen, Erik Meijering
2012	J	`jnl`	Cell Segmentation: 50 Years Down the Road [Life Sciences]. IEEE Signal Process. Mag. Erik Meijering
2012	—	`conf`	Reconstruction and quantification of neuronal morphology. ISBI Erik Meijering
2012	J	`jnl`	Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI. Medical Image Anal. Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Piotr Wielopolski, Adriaan Moelker, Tirza Springeling, Monique Bernsen, Wiro J. Niessen, Erik Meijering
2012	B	`conf`	Super-resolution in MRI: better images faster? Image Processing Esben Plenge, Dirk H. J. Poot, Monique Bernsen, Gyula Kotek, Gavin Houston, Piotr Wielopolski, Louise van der Weerd, Wiro J. Niessen, Erik Meijering
2012	—	`conf`	Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. ISBI Artem Khmelinskii, Esben Plenge, Peter Kok, Oleh Dzyubachyk, Dirk H. J. Poot, E. Suidgeest, Charl P. Botha, Wiro J. Niessen, Louise van der Weerd, Erik Meijering, Boudewijn P. F. Lelieveldt
2011	—	`conf`	Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. ISBI Noemí Carranza-Herrezuelo, Ihor Smal, Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering
2011	—	`conf`	Quantitative comparison of tracking methods for motion analysis in tagged MRI. ISBI Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik Meijering
2011	—	`conf`	Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI. MICCAI (1) Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy. IEEE Trans. Medical Imaging Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci. Bioinform. Oleh Dzyubachyk, Jeroen Essers, Wiggert A. van Cappellen, Céline Baldeyron, Akiko Inagaki, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy". IEEE Trans. Medical Imaging Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters. IEEE Trans. Image Process. Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Wiro J. Niessen, Erik Meijering
2010	—	`conf`	Particle filtering methods for motion analysis in tagged MRI. ISBI Ihor Smal, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy. IEEE Trans. Medical Imaging Ihor Smal, Marco Loog, Wiro J. Niessen, Erik Meijering
2009	—	`conf`	Energy Minimization Methods for Cell Motion Correction and Intracellular Analysis in Live-Cell Fluorescence Microscopy. ISBI Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik Meijering
2009	—	`conf`	Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging. ISBI Ihor Smal, Marco Loog, Wiro J. Niessen, Erik Meijering
2008	—	`conf`	A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering. ISBI Ihor Smal, Wiro J. Niessen, Erik Meijering
2008	—	`conf`	Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images. ISBI Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering
2008	J	`jnl`	Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. Medical Image Anal. Ihor Smal, Erik Meijering, Katharina Draegestein, Niels Galjart, Ilya Grigoriev, Anna Akhmanova, M. E. van Royen, Adriaan B. Houtsmuller, Wiro J. Niessen
2008	J	`jnl`	Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis. IEEE Trans. Medical Imaging Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik Meijering
2007	—	`conf`	A Variational Model for Level-set Based Cell Tracking in Time-lapse Fluorescence Microscopy Images. ISBI Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering
2007	—	`conf`	Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images. ISBI Ihor Smal, Wiro J. Niessen, Erik Meijering
2007	—	`conf`	Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging. IPMI Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik Meijering
2006	—	`conf`	Bayesian tracking for fluorescence microscopic imaging. ISBI Ihor Smal, Wiro J. Niessen, Erik Meijering
2006	J	`jnl`	Tracking in molecular bioimaging. IEEE Signal Process. Mag. Erik Meijering, Ihor Smal, Gaudenz Danuser
2005	J	`jnl`	Guest Editorial. IEEE Trans. Image Process. R. Murphy, Erik Meijering, Gaudenz Danuser
2004	—	`conf`	Neurite Tracing in Fluorescence Microscopy Images using Ridge Filtering and Graph Searching: Principles and Validation. ISBI Erik Meijering, Mathews Jacob, J.-C. Floyd Sarria, Pascal Steiner, Harald Hirling, Michael Unser
2004	—	`conf`	VAMPIRE: Improved Method for Automated Center Lumen Line Definition in Atherosclerotic Carotid Arteries in CTA Data. MICCAI (1) Hugo A. F. Gratama van Andel, Erik Meijering, Aad van der Lugt, Henri A. Vrooman, Rik Stokking
2003	—	`conf`	A Novel Approach to Neurite Tracing in Fluorescence Microscopy Images. SIP Erik Meijering, Mathews Jacob, J.-C. Floyd Sarria, Michael Unser
2003	J	`jnl`	A note on cubic convolution interpolation. IEEE Trans. Image Process. Erik Meijering, Michael Unser
2002	J	`jnl`	A chronology of interpolation: from ancient astronomy to modern signal and image processing. Proc. IEEE Erik Meijering
2002	J	`jnl`	Diffusion-enhanced visualization and quantification of vascular anomalies in three-dimensional rotational angiography: Results of an in-vitro evaluation. Medical Image Anal. Erik Meijering, Wiro J. Niessen, Joachim Weickert, Max A. Viergever
2002	J	`jnl`	Prolog to a chronology of interpolation: from ancient astronomy to modern signal and image processing. Proc. IEEE Erik Meijering, Howard Falk
2001	A	`conf`	Evaluation of Diffusion Techniques for Improved Vessel Visualization and Quantification in Three-Dimensional Rotational Angiography. MICCAI Erik Meijering, Wiro J. Niessen, Joachim Weickert, Max A. Viergever