Erik Arner

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
xcore: an R package for inference of gene expression regulators.
BMC Bioinform.
Maciej Migdal, Takahiro Arakawa, Satoshi Takizawa, Masaaki Furuno, Harukazu Suzuki, Erik Arner, Cecilia Lanny Winata, Bogumil Kaczkowski
2021 J jnl
DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment.
PLoS Comput. Biol.
Ramzan Umarov, Yu Li, Erik Arner
2021 J jnl
ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation.
PLoS Comput. Biol.
Ramzan Umarov, Yu Li, Takahiro Arakawa, Satoshi Takizawa, Xin Gao, Erik Arner
2017 J jnl
Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.
Bioinform.
Trisevgeni Rapakoulia, Xin Gao, Yi Huang, Michiel J. L. de Hoon, Mariko Okada-Hatakeyama, Harukazu Suzuki, Erik Arner
2015 J jnl
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.
PLoS Comput. Biol.
Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. M. Semple
2011 — conf
Optimization of turn-back primers in isothermal amplification.
BIBM Workshops
Yasumasa Kimura, Michiel J. L. de Hoon, Shintaro Aoki, Yuri Ishizu, Carsten O. Daub, Alexander Lezhava, Erik Arner, Yoshihide Hayashizaki, Yuki Kawai, Yasushi Kogo
2010 J jnl
NGSView: an extensible open source editor for next-generation sequencing data.
Bioinform.
Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub
2007 J jnl
GRAT - genome-scale rapid alignment tool.
Comput. Methods Programs Biomed.
Ellen Kindlund, Martti T. Tammi, Erik Arner, Daniel Nilsson, Björn Andersson
2006 J jnl
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions.
BMC Bioinform.
Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen Kindlund, Björn Andersson
2004 J jnl
ReDiT: Repeat Discrepancy Tagger-a shotgun assembly finishing aid.
Bioinform.
Martti T. Tammi, Erik Arner, Ellen Kindlund, Björn Andersson
2003 J jnl
TRAP: Tandem Repeat Assembly Program produces improved shotgun assemblies of repetitive sequences.
Comput. Methods Programs Biomed.
Martti T. Tammi, Erik Arner, Björn Andersson
2002 J jnl
Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs.
Bioinform.
Martti T. Tammi, Erik Arner, Tom Britton, Björn Andersson