Eric Y. Chuang

37 papers Journal 27Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
Ensemble-MIL: deep learning-based ensemble framework for biomarker prediction from histopathological images in colorectal cancer.
Biomed. Signal Process. Control.
Geng-Yun Tien, Yu-Chia Chen, Liang-Chuan Lai, Tzu-Pin Lu, Mong-Hsun Tsai, Eric Y. Chuang, Hsiang-Han Chen
2024 J jnl
NURECON: A Novel Online System for Determining Nutrition Requirements Based on Microbial Composition.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhao-Qi Hu, Yuan-Mao Hung, Li-Han Chen, Liang-Chuan Lai, Min-Hsiung Pan, Eric Y. Chuang, Mong-Hsun Tsai
2023 J jnl
Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data.
J. Biomed. Informatics
Amrita Chattopadhyay, Chien-Yueh Lee, Ying-Cheng Shen, Kuan-Chen Lu, Tzu-Hung Hsiao, Ching-Heng Lin, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
2023 J jnl
Twnbiome: a public database of the healthy Taiwanese gut microbiome.
BMC Bioinform.
Amrita Chattopadhyay, Chien-Yueh Lee, Ya-Chin Lee, Chiang-Lin Liu, Hsin-Kuang Chen, Yung-Hua Li, Liang-Chuan Lai, Mong-Hsun Tsai, Yen-Hsuan Ni, Han-Mo Chiu, Tzu-Pin Lu, Eric Y. Chuang
2022 J jnl
16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences.
Frontiers Bioinform.
Yu-Peng Hsieh, Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang
2022 J jnl
CLIN_SKAT: an R package to conduct association analysis using functionally relevant variants.
BMC Bioinform.
Amrita Chattopadhyay, Ching-Yu Shih, Yu-Chen Hsu, Jyh-Ming Jimmy Juang, Eric Y. Chuang, Tzu-Pin Lu
2022 J jnl
Join Classifier of Type and Index Mutation on Lung Cancer DNA Using Sequential Labeling Model.
IEEE Access
Untari Novia Wisesty, Ayu Purwarianti, Adi Pancoro, Amrita Chattopadhyay, Nam Nhut Phan, Eric Y. Chuang, Tati Rajab Mengko
2022 J jnl
To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences.
Comput. Biol. Medicine
Yuan-Mao Hung, Wei-Ni Lyu, Ming-Lin Tsai, Chiang-Lin Liu, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang
2021 J jnl
ATTRACTIVE - An Auto-Updating Database for Experimental Protocols in Regenerative Medicine.
IEEE Access
Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang
2021 J jnl
CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer.
Database J. Biol. Databases Curation
Amrita Chattopadhyay, Zi Han Teoh, Chi-Yun Wu, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Chia-Hsin Wu, Tzu-Pin Lu, Eric Y. Chuang
2021 J jnl
High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data.
Briefings Bioinform.
Nam Nhut Phan, Amrita Chattopadhyay, Tsui-Ting Lee, Hsiang-I Yin, Tzu-Pin Lu, Liang-Chuan Lai, Hsiao-Lin Hwa, Mong-Hsun Tsai, Eric Y. Chuang
2021 J jnl
RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kuan-Hao Chao, Yi-Wen Hsiao, Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
2019 J jnl
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases.
Database J. Biol. Databases Curation
Chien-Yueh Lee, Amrita Chattopadhyay, Li-Mei Chiang, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
2019 J jnl
anamiR: integrated analysis of MicroRNA and gene expression profiling.
BMC Bioinform.
Ti-Tai Wang, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
2018 J jnl
Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yu-Chiao Chiu, Tzu-Hung Hsiao, Li-Ju Wang, Yidong Chen, Eric Y. Chuang
2018 J jnl
CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system.
Database J. Biol. Databases Curation
Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
2017 J jnl
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.
BMC Bioinform.
Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen
2017 J jnl
iGC - an integrated analysis package of gene expression and copy number alteration.
BMC Bioinform.
Yi-Pin Lai, Liang-Bo Wang, Wei-An Wang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
2016 J jnl
A simple gene set-based method accurately predicts the synergy of drug pairs.
BMC Syst. Biol.
Yu-Ching Hsu, Yu-Chiao Chiu, Yidong Chen, Tzu-Hung Hsiao, Eric Y. Chuang
2015 — conf
Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme.
BIBM
Yu-Chiao Chiu, Kai-Wen Liang, Tzu-Hung Hsiao, Yidong Chen, Eric Y. Chuang
2015 — conf
Patho-finder - A fast and accurate program for pathogen identification through RNA-seq.
BIBM
Chin-Ting Wu, Tzu-Hung Hsiao, Yu-Chiao Chiu, Yu-Ching Hsu, Eric Y. Chuang, Yidong Chen
2014 J jnl
Estrogen receptor status prediction by gene component regression: a comparative study.
Int. J. Data Min. Bioinform.
Chi-Cheng Huang, Shih-Hsin Tu, Heng-Hui Lien, Jaan-Yeh Jeng, Jung-Sen Liu, Ching-Shui Huang, Liang-Chuan Lai, Eric Y. Chuang
2013 — conf
Characterization of conditions for competing endogenous RNA regulation in GBM.
GENSiPS
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
2013 J jnl
Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients.
Int. J. Data Min. Bioinform.
Pei-Chun Chen, Tzu-Pin Lu, Jung-Chih Chang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Eric Y. Chuang
2013 J jnl
Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis.
Adv. Bioinformatics
Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen
2013 J jnl
Identification of reproducible gene expression signatures in lung adenocarcinoma.
BMC Bioinform.
Tzu-Pin Lu, Eric Y. Chuang, James J. Chen
2013 — conf
Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme.
BIBM
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
2012 — conf
Using gene sets to identify putative drugs for breast cancer.
BIBM
Tzu-Hung Hsiao, Hung-I Harry Chen, Yidong Chen, Yu-Heng Chen, Eric Y. Chuang
2011 J jnl
DBCAT: Database of CpG Islands and Analytical Tools for Identifying Comprehensive Methylation Profiles in Cancer Cells.
J. Comput. Biol.
Hsien-Chi Kuo, Po-Yu Lin, Ting-Chiun Chung, Chin-Mei Chao, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang
2010 — conf
Comparison of triple negative breast cancer between Asian and western data sets.
BIBM Workshops
Lee H. Chen, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Wen-Hung Kuo, King-Jen Chang, Eric Y. Chuang
2010 — conf
Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patients.
BIBM
Jung-Chih Chang, Tzu-Pin Lu, Eric Y. Chuang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Pei-Chun Chen
2010 — conf
Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma.
BIBM
Tzu-Pin Lu, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang
2010 — conf
Projecting partial least square and principle component regression across microarray studies.
BIBM Workshops
Chi-Cheng Huang, Heng-Hui Lien, Eric Y. Chuang, Shih-Hsin Tu, Ching-Shui Huang, Liang-Chuan Lai
2010 — conf
Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinoma.
BIBM
Jo-Yang Lu, Eric Y. Chuang, Chuhsing Kate Hsiao, Mong-Hsun Tsai, Liang-Chuan Lai, Pei-Chun Chen
2008 J jnl
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.
Bioinform.
Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen
2008 J jnl
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.
Bioinform.
Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen
2004 J jnl
Correcting log ratios for signal saturation in cDNA microarrays.
Bioinform.
Lori E. Dodd, Edward L. Korn, Lisa M. McShane, G. V. R. Chandramouli, Eric Y. Chuang