Eric Tannier

60 papers B 3C 5Misc 2Journal 38Unranked 4
YearRankTypeTitle / Venue / Authors
2022 J jnl
Phylogenetic reconciliation.
PLoS Comput. Biol.
Hugo Menet, Vincent Daubin, Eric Tannier
2022 J jnl
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation.
Bioinform.
Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier
2020 J jnl
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Bioinform.
Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons
2020 J jnl
Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages.
Bioinform.
Adrián A. Davín, Théo Tricou, Eric Tannier, Damien M. de Vienne, Gergely J. Szöllosi
2019 J jnl
Gene tree reconciliation including transfers with replacement is NP-hard and FPT.
J. Comb. Optim.
Damir Hasic, Eric Tannier
2018 J jnl
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.
BMC Genom.
Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard
2018 J jnl
RecPhyloXML: a format for reconciled gene trees.
Bioinform.
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
2017 J jnl
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes.
Algorithms Mol. Biol.
Guillaume Fertin, Géraldine Jean, Eric Tannier
2017 J jnl
Gene tree reconciliation including transfers with replacement is hard and FPT.
CoRR
Damir Hasic, Eric Tannier
2017 J jnl
Gene tree species tree reconciliation with gene conversion.
CoRR
Damir Hasic, Eric Tannier
2017 J jnl
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.
Bioinform.
Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca
2016 C conf
Comparative Genomics on Artificial Life.
CiE
Priscila Biller, Carole Knibbe, Guillaume Beslon, Eric Tannier
2016 C conf
Genome Rearrangements on Both Gene Order and Intergenic Regions.
WABI
Guillaume Fertin, Géraldine Jean, Eric Tannier
2016 J jnl
Genome rearrangements with indels in intergenes restrict the scenario space.
BMC Bioinform.
Laurent Bulteau, Guillaume Fertin, Eric Tannier
2016 — ch.
Sorting Signed Permutations by Reversal (Reversal Sequence).
Encyclopedia of Algorithms
Eric Tannier
2015 — book
Foundations of Coding - Compression, Encryption, Error Correction.
Jean-Guillaume Dumas, Jean-Louis Roch, Eric Tannier, Sébastien Varrette
2015 J jnl
Moments of genome evolution by Double Cut-and-Join.
BMC Bioinform.
Priscila Biller, Laurent Guéguen, Eric Tannier
2015 J jnl
Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies.
BMC Bioinform.
Magali Semeria, Eric Tannier, Laurent Guéguen
2014 J jnl
Counting and sampling SCJ small parsimony solutions.
Theor. Comput. Sci.
István Miklós, Sándor Z. Kiss, Eric Tannier
2013 — ch.
Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later.
Models and Algorithms for Genome Evolution
Cédric Chauve, Nadia El-Mabrouk, Laurent Guéguen, Magali Semeria, Eric Tannier
2013 J jnl
FPSAC: fast phylogenetic scaffolding of ancient contigs.
Bioinform.
Ashok Rajaraman, Eric Tannier, Cédric Chauve
2013 J jnl
Gene tree correction guided by orthology.
BMC Bioinform.
Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk
2013 J jnl
Lateral gene transfer, rearrangement, reconciliation.
BMC Bioinform.
Murray Patterson, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
2013 C conf
Linearization of ancestral multichromosomal genomes.
CTW
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2013 — book
Models and Algorithms for Genome Evolution
Cédric Chauve, Nadia El-Mabrouk, Eric Tannier
2013 J jnl
On sampling SCJ rearrangement scenarios
CoRR
István Miklós, Sándor Z. Kiss, Eric Tannier
2012 J jnl
ANGES: reconstructing ANcestral GEnomeS maps.
Bioinform.
Bradley R. Jones, Ashok Rajaraman, Eric Tannier, Cédric Chauve
2012 J jnl
Approximating the number of Double Cut-and-Join scenarios.
Theor. Comput. Sci.
István Miklós, Eric Tannier
2012 J jnl
Evolution of gene neighborhoods within reconciled phylogenies.
Bioinform.
Sèverine Bérard, Coralie Gallien, Bastien Boussau, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
2012 J jnl
Linearization of ancestral multichromosomal genomes.
BMC Bioinform.
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2012 C conf
Preserving Inversion Phylogeny Reconstruction.
WABI
Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier
2011 — book
Evolution Combinatoire, Algorithmique des Chromosomes.
Eric Tannier
2011 J jnl
Mapping ancestral genomes with massive gene loss: A matrix sandwich problem.
Bioinform.
Haris Gavranovic, Cédric Chauve, Jérôme Salse, Eric Tannier
2011 J jnl
Reconstructing the architecture of the ancestral amniote genome.
Bioinform.
Aïda Ouangraoua, Eric Tannier, Cédric Chauve
2010 J jnl
Bayesian sampling of genomic rearrangement scenarios via double cut and join.
Bioinform.
István Miklós, Eric Tannier
2010 J jnl
Cassis: detection of genomic rearrangement breakpoints.
Bioinform.
Christian Baudet, Claire Lemaitre, Zanoni Dias, Christian Gautier, Eric Tannier, Marie-France Sagot
2010 — ed.
Comparative Genomics - International Workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010. Proceedings
RECOMB-CG
Eric Tannier
2010 J jnl
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.
BMC Bioinform.
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent Daubin
2010 Misc conf
Guided Genome Halving: Provably Optimal Solutions Provide Good Insights into the Preduplication Ancestral Genome of Saccharomyces Cerevisiae.
Pacific Symposium on Biocomputing
Haris Gavranovic, Eric Tannier
2010 J jnl
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II.
J. Comput. Biol.
Cédric Chauve, Haris Gavranovic, Aïda Ouangraoua, Eric Tannier
2009 — book
Combinatorics of Genome Rearrangements.
Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, Stéphane Vialette
2009 J jnl
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes.
J. Comput. Biol.
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
2009 J jnl
Multichromosomal median and halving problems under different genomic distances.
BMC Bioinform.
Eric Tannier, Chunfang Zheng, David Sankoff
2009 — conf
Prediction of Contiguous Regions in the Amniote Ancestral Genome.
ISBRA
Aïda Ouangraoua, Frédéric Boyer, Andrew W. McPherson, Eric Tannier, Cédric Chauve
2009 — conf
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods.
RECOMB-CG
Eric Tannier
2008 J jnl
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes.
PLoS Comput. Biol.
Cédric Chauve, Eric Tannier
2008 J jnl
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.
IEEE ACM Trans. Comput. Biol. Bioinform.
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
2008 C conf
Multichromosomal Genome Median and Halving Problems.
WABI
Eric Tannier, Chunfang Zheng, David Sankoff
2008 — conf
Perfect DCJ Rearrangement.
RECOMB-CG
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
2008 J jnl
Precise detection of rearrangement breakpoints in mammalian chromosomes.
BMC Bioinform.
Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot
2008 B conf
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem.
EvoCOP
Renaud Lenne, Christine Solnon, Thomas Stützle, Eric Tannier, Mauro Birattari
2008 — ch.
Sorting Signed Permutations by Reversal (Reversal Sequence).
Encyclopedia of Algorithms
Eric Tannier
2007 J jnl
Advances on sorting by reversals.
Discret. Appl. Math.
Eric Tannier, Anne Bergeron, Marie-France Sagot
2007 J jnl
Evolution under Reversals: Parsimony and Conservation of Common Intervals.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yoan Diekmann, Marie-France Sagot, Eric Tannier
2007 — conf
The Solution Space of Sorting by Reversals.
ISBRA
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
2005 Misc conf
Perfect Sorting by Reversals.
COCOON
Marie-France Sagot, Eric Tannier
2004 J jnl
On Metric Generators of Graphs.
Math. Oper. Res.
András Sebö, Eric Tannier
2004 B conf
Sorting by Reversals in Subquadratic Time.
CPM
Eric Tannier, Marie-France Sagot
2003 J jnl
On a modular domination game.
Theor. Comput. Sci.
Sylvain Gravier, Mehdi Mhalla, Eric Tannier
2001 B conf
Connected Joins in Graphs.
IPCO
András Sebö, Eric Tannier