Eric Rivals - RankMe

75 papers A* 2B 13C 4Misc 3Journal 45Unranked 8

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Incremental computation of the set of period sets. Theor. Comput. Sci. Eric Rivals
2025	J	`jnl`	Algorithms to reconstruct past indels: The deletion-only parsimony problem. PLoS Comput. Biol. Jordan Moutet, Eric Rivals, Fabio Pardi
2025	J	`jnl`	Convergence of the Number of Period sets in Strings. Algorithmica Eric Rivals, Michelle Sweering, Pengfei Wang
2025	—	`conf`	Counting Overlapping Pairs of Words. COCOON (2) Eric Rivals, Pengfei Wang
2025	—	`conf`	Incremental Computation of the Set of Period Sets. SOFSEM (2) Eric Rivals
2024	J	`jnl`	Counting overlapping pairs of strings. CoRR Eric Rivals, Pengfei Wang
2024	J	`jnl`	Incremental computation of the set of period sets. CoRR Eric Rivals
2023	J	`jnl`	Computing Phylo-$k$k-Mers. IEEE ACM Trans. Comput. Biol. Bioinform. Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi
2023	A*	`conf`	Convergence of the Number of Period Sets in Strings. ICALP Eric Rivals, Michelle Sweering, Pengfei Wang
2023	J	`jnl`	EPIK: precise and scalable evolutionary placement with informative Bioinform. Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals
2023	Misc	`conf`	Periodicity of Degenerate Strings. PSC Estéban Gabory, Eric Rivals, Michelle Sweering, Hilde Verbeek, Pengfei Wang
2023	J	`jnl`	Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model. PLoS Comput. Biol. Carole Chevalier, Jérôme Dorignac, Yahaya Ibrahim, Armelle Choquet, Alexandre David, Julie Ripoll, Eric Rivals, Frédéric Geniet, Nils-Ole Walliser, John Palmeri, Andrea Parmeggiani, Jean-Charles Walter
2023	J	`jnl`	dipwmsearch: a Python package for searching di-PWM motifs. Bioinform. Marie Mille, Julie Ripoll, Bastien Cazaux, Eric Rivals
2022	J	`jnl`	Convergence of the number of period sets in strings. CoRR Eric Rivals, Michelle Sweering, Pengfei Wang
2021	B	`conf`	A Linear Time Algorithm for Constructing Hierarchical Overlap Graphs. CPM Sangsoo Park, Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals
2021	J	`jnl`	A Linear Time Algorithm for Constructing Hierarchical Overlap Graphs. CoRR Sangsoo Park, Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals
2021	J	`jnl`	PEWO: a collection of workflows to benchmark phylogenetic placement. Bioinform. Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals
2021	J	`jnl`	Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. Bioinform. Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi
2020	C	`conf`	Efficient Construction of Hierarchical Overlap Graphs. SPIRE Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals
2020	J	`jnl`	Greedy-reduction from Shortest Linear Superstring to Shortest Circular Superstring. CoRR Bastien Cazaux, Eric Rivals
2020	J	`jnl`	Hierarchical Overlap Graph. Inf. Process. Lett. Bastien Cazaux, Eric Rivals
2019	J	`jnl`	AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees. Bioinform. Bastien Cazaux, Guillaume Castel, Eric Rivals
2019	B	`conf`	Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding. CPM Bastien Cazaux, Eric Rivals
2019	J	`jnl`	Linking indexing data structures to de Bruijn graphs: Construction and update. J. Comput. Syst. Sci. Bastien Cazaux, Thierry Lecroq, Eric Rivals
2018	—	`conf`	Fast and Accurate Genome-Scale Identification of DNA-Binding Sites. BIBM David Martin, Vincent Maillol, Eric Rivals
2018	J	`jnl`	Hierarchical Overlap Graph. CoRR Bastien Cazaux, Eric Rivals
2018	B	`conf`	Practical lower and upper bounds for the Shortest Linear Superstring. SEA Bastien Cazaux, Samuel Juhel, Eric Rivals
2018	J	`jnl`	Relationship between superstring and compression measures: New insights on the greedy conjecture. Discret. Appl. Math. Bastien Cazaux, Eric Rivals
2018	J	`jnl`	Strong link between BWT and XBW via Aho-Corasick automaton and applications to Run-Length Encoding. CoRR Bastien Cazaux, Eric Rivals
2018	B	`conf`	Superstrings with multiplicities. CPM Bastien Cazaux, Eric Rivals
2017	J	`jnl`	Accurate self-correction of errors in long reads using de Bruijn graphs. Bioinform. Leena Salmela, Riku Walve, Eric Rivals, Esko Ukkonen
2017	B	`conf`	Full Compressed Affix Tree Representations. DCC Rodrigo Cánovas, Eric Rivals
2017	—	`conf`	Rearrangement Scenarios Guided by Chromatin Structure. RECOMB-CG Sylvain Pulicani, Pijus Simonaitis, Eric Rivals, Krister M. Swenson
2017	J	`jnl`	The Compressed Overlap Index. CoRR Rodrigo Cánovas, Bastien Cazaux, Eric Rivals
2016	J	`jnl`	A linear time algorithm for Shortest Cyclic Cover of Strings. J. Discrete Algorithms Bastien Cazaux, Eric Rivals
2016	J	`jnl`	Read mapping on de Bruijn graphs. BMC Bioinform. Antoine Limasset, Bastien Cazaux, Eric Rivals, Pierre Peterlongo
2016	B	`conf`	Shortest DNA Cyclic Cover in Compressed Space. DCC Bastien Cazaux, Rodrigo Cánovas, Eric Rivals
2016	C	`conf`	Superstring Graph: A New Approach for Genome Assembly. AAIM Bastien Cazaux, Gustavo Sacomoto, Eric Rivals
2016	J	`jnl`	The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings. Discret. Appl. Math. Bastien Cazaux, Eric Rivals
2015	C	`conf`	Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree. LATA Bastien Cazaux, Thierry Lecroq, Eric Rivals
2015	J	`jnl`	YOC, A new strategy for pairwise alignment of collinear genomes. BMC Bioinform. Raluca Uricaru, Célia Michotey, Hélène Chiapello, Eric Rivals
2014	Misc	`conf`	Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings. PSC Bastien Cazaux, Eric Rivals
2014	B	`conf`	From Indexing Data Structures to de Bruijn Graphs. CPM Bastien Cazaux, Thierry Lecroq, Eric Rivals
2014	J	`jnl`	LoRDEC: accurate and efficient long read error correction. Bioinform. Leena Salmela, Eric Rivals
2014	J	`jnl`	Reverse engineering of compact suffix trees and links: A novel algorithm. J. Discrete Algorithms Bastien Cazaux, Eric Rivals
2013	—	`conf`	Scalable and Versatile ISBRA Niko Välimäki, Eric Rivals
2012	J	`jnl`	A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections. ERCIM News Eric Rivals, Nicolas Philippe, Mikaël Salson, Martine Léonard, Therese Commes, Thierry Lecroq
2011	—	`conf`	Approximate Common Intervals in Multiple Genome Comparison. BIBM Annie Chateau, Pierre Riou, Eric Rivals
2011	J	`jnl`	Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps. J. Comput. Biol. Raluca Uricaru, Alban Mancheron, Eric Rivals
2011	J	`jnl`	Querying large read collections in main memory: a versatile data structure. BMC Bioinform. Nicolas Philippe, Mikaël Salson, Thierry Lecroq, Martine Léonard, Therese Commes, Eric Rivals
2010	—	`conf`	Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps. RECOMB-CG Raluca Uricaru, Alban Mancheron, Eric Rivals
2010	J	`jnl`	Reliable Bacterial Genome Comparison Tools. ERCIM News Eric Rivals, Alban Mancheron, Raluca Uricaru
2009	C	`conf`	mpscan: Fast Localisation of Multiple Reads in Genomes. WABI Eric Rivals, Leena Salmela, Petteri Kiiskinen, Petri Kalsi, Jorma Tarhio
2008	J	`jnl`	Hardness of optimal spaced seed design. J. Comput. Syst. Sci. François Nicolas, Eric Rivals
2007	J	`jnl`	Detecting microsatellites within genomes: significant variation among algorithms. BMC Bioinform. Sébastien O. Leclercq, Eric Rivals, Philippe Jarne
2007	J	`jnl`	Detection of recombination in variable number tandem repeat sequences. South Afr. Comput. J. Ezekiel F. Adebiyi, Eric Rivals
2007	J	`jnl`	Longest common subsequence problem for unoriented and cyclic strings. Theor. Comput. Sci. François Nicolas, Eric Rivals
2006	B	`conf`	Tiling an Interval of the Discrete Line. CPM Olivier Bodini, Eric Rivals
2005	B	`conf`	Hardness of Optimal Spaced Seed Design. CPM François Nicolas, Eric Rivals
2005	J	`jnl`	Hardness results for the center and median string problems under the weighted and unweighted edit distances. J. Discrete Algorithms François Nicolas, Eric Rivals
2004	J	`jnl`	A Survey On Algorithmic Aspects Of Tandem Repeats Evolution. Int. J. Found. Comput. Sci. Eric Rivals
2004	J	`jnl`	STAR: an algorithm to Search for Tandem Approximate Repeats. Bioinform. Olivier Delgrange, Eric Rivals
2003	J	`jnl`	Combinatorics of periods in strings. J. Comb. Theory A Eric Rivals, Sven Rahmann
2003	J	`jnl`	Comparison of Minisatellites. J. Comput. Biol. Sèverine Bérard, Eric Rivals
2003	B	`conf`	Complexities of the Centre and Median String Problems. CPM François Nicolas, Eric Rivals
2003	J	`jnl`	On The Distribution Of The Number Of Missing Words In Random Texts. Comb. Probab. Comput. Sven Rahmann, Eric Rivals
2002	B	`conf`	Comparison of minisatellites. RECOMB Sèverine Bérard, Eric Rivals
2001	A*	`conf`	Combinatorics of Periods in Strings. ICALP Eric Rivals, Sven Rahmann
2000	B	`conf`	Exact and Efficient Computation of the Expected Number of Missing and Common Words in Random Texts. CPM Sven Rahmann, Eric Rivals
1999	Misc	`conf`	Location of Repetitive Regions in Sequences By Optimizing A Compression Method. Pacific Symposium on Biocomputing Olivier Delgrange, Max Dauchet, Eric Rivals
1999	J	`jnl`	Transformation distances: a family of dissimilarity measures based on movements of segments. Bioinform. Jean-Stéphane Varré, Jean-Paul Delahaye, Eric Rivals
1998	J	`jnl`	Optimal Representation in Average Using Kolmogorov Complexity. Theor. Comput. Sci. Eric Rivals, Jean-Paul Delahaye
1998	—	`conf`	The transformation distance: A dissimilarity measure based an movements of segments. German Conference on Bioinformatics Jean-Stéphane Varré, Jean-Paul Delahaye, Eric Rivals
1997	J	`jnl`	Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences. Comput. Appl. Biosci. Eric Rivals, Olivier Delgrange, Jean-Paul Delahaye, Max Dauchet, Marie-Odile Delorme, Alain Hénaut, Emmanuelle Ollivier
1996	B	`conf`	A Guaranteed Compression Scheme for Repetitive DNA Sequences. Data Compression Conference Eric Rivals, Jean-Paul Delahaye, Max Dauchet, Olivier Delgrange