Eric P. Hoffman

43 papers A 2C 4Journal 25Unranked 11
YearRankTypeTitle / Venue / Authors
2015 J jnl
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform.
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
2014 J jnl
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol.
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
2014 — conf
Predicting age at loss of ambulation in Duchenne muscular dystrophy with deep phenotypic measures.
GlobalSIP
Yinxue Wang, Luca Bello, Yue Wang, Craig M. McDonald, Eric P. Hoffman, Guoqiang Yu
2013 J jnl
The CAM software for nonnegative blind source separation in R-Java.
J. Mach. Learn. Res.
Niya Wang, Fan Meng, Li Chen, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Yue Joseph Wang
2012 J jnl
Computational analysis of muscular dystrophy sub-types using a novel integrative scheme.
Neurocomputing
Chen Wang, Sook Shin Ha, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman
2011 J jnl
DDN: a caBIG
Bioinform.
Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Joseph Wang
2011 J jnl
Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform.
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Huai Li, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
2011 J jnl
PUGSVM: a caBIG
Bioinform.
Guoqiang Yu, Huai Li, Sook Shin Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang
2010 C conf
Computational Analysis of Muscular Dystrophy Sub-types Using a Novel Integrative Scheme.
ICMLA
Chen Wang, Sook Shin Ha, Yue Joseph Wang, Jianhua Xuan, Eric P. Hoffman
2010 J jnl
Knowledge-guided gene ranking by coordinative component analysis.
BMC Bioinform.
Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke
2010 J jnl
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res.
Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Joseph Wang
2010 J jnl
Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform.
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
2009 J jnl
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
Int. J. Data Min. Bioinform.
Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman
2009 J jnl
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinform.
Bai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
2009 J jnl
GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories.
IEEE Trans. Vis. Comput. Graph.
Bo Hyoung Kim, Bongshin Lee, Susan Knoblach, Eric P. Hoffman, Jinwook Seo
2009 J jnl
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des.
Li Chen, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman, Rebecca B. Riggins, Robert Clarke
2008 — conf
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
BIOCOMP
Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
2008 — conf
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
BIOCOMP
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
2008 — conf
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
BCBGC
Jianghui Xiong, Chen Wang, Bai Zhang, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke, Jianhua Xuan
2008 — conf
Integrative Network Component Analysis for Regulatory Network Reconstruction.
ISBRA
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
2008 J jnl
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform.
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke
2008 J jnl
Motif-directed network component analysis for regulatory network inference.
BMC Bioinform.
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
2008 — conf
Reliability Analysis of Transcriptional Regulatory Networks.
BCBGC
Chen Wang, Jianhua Xuan, Li Chen, Eric P. Hoffman, Robert Clarke
2008 — conf
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
ISBRA
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
2008 J jnl
caBIG
BMC Bioinform.
Yitan Zhu, Huai Li, David J. Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang
2007 C conf
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis.
ICMLA
Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan
2007 J jnl
Gene Selection for Multiclass Prediction by Weighted Fisher Criterion.
EURASIP J. Bioinform. Syst. Biol.
Jianhua Xuan, Yue Joseph Wang, Yibin Dong, Yuanjian Feng, Bin Wang, Javed I. Khan, Marina Bakay, Zuyi Wang, Lauren Pachman, Sara Winokur, Yi-Wen Chen, Robert Clarke, Eric P. Hoffman
2007 — conf
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
BIOCOMP
Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang
2006 J jnl
An interactive power analysis tool for microarray hypothesis testing and generation.
Bioinform.
Jinwook Seo, Heather Gordish-Dressman, Eric P. Hoffman
2006 — conf
Latent Variable and nICA Modeling of Pathway Gene Module Composite.
EMBC
Ting Gong, Yitan Zhu, Jianhua Xuan, Huai Li, Robert Clarke, Eric P. Hoffman, Yue Wang
2006 C conf
ModVis: An information visualization tool for gene module discovery.
CAINE
Justin Molineaux, Jianhua Xuan, Ting Gong, Yitan Zhu, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
2006 J jnl
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinform.
Zuyi Wang, Yue Joseph Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, Eric P. Hoffman
2006 — conf
Phenotypic-Specific Gene Module Discovery using a Diagnostic Tree and caBIGTM VISDA.
EMBC
Yitan Zhu, Zuyi Wang, Yuanjian Feng, Jianhua Xuan, David J. Miller, Eric P. Hoffman, Yue Wang
2006 J jnl
Probe set algorithms: is there a rational best bet?
BMC Bioinform.
Jinwook Seo, Eric P. Hoffman
2005 — ch.
Gene Selection by Weighted Fisher criterion for Multiclass Prediction.
Advances in Bioinformatics and Its Applications
Jianhua Xuan, Yibin Dong, Javed I. Khan, Robert Clarke, Eric P. Hoffman, Yue Wang
2005 C conf
Normalization of Microarray Data by Iterative Nonlinear Regression.
BIBE
Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
2004 J jnl
Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.
Bioinform.
Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman, Eric P. Hoffman
2004 — conf
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling.
ICPR (2)
Jianhua Xuan, Yibin Dong, Javed I. Khan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
2004 J jnl
The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.
Nucleic Acids Res.
Josephine Chen, Po Zhao, Donald Massaro, Linda B. Clerch, Richard R. Almon, Debra C. DuBois, William J. Jusko, Eric P. Hoffman
2003 A conf
Interactive color mosaic and dendrogram displays for signal/noise optimization in microarray data analysis.
ICME
Jinwook Seo, Marina Bakay, Po Zhao, Yi-Wen Chen, Priscilla Clarkson, Ben Shneiderman, Eric P. Hoffman
2002 J jnl
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs.
BMC Bioinform.
Rehannah H. A. Borup, Stefano Toppo, Yi-Wen Chen, Tanya M. Teslovich, Gerolamo Lanfranchi, Giorgio Valle, Eric P. Hoffman
2002 J jnl
Sources of variability and effect of experimental approach on expression profiling data interpretation.
BMC Bioinform.
Marina Bakay, Yi-Wen Chen, Rehannah H. A. Borup, Po Zhao, Kanneboyina Nagaraju, Eric P. Hoffman
1994 A conf
Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers.
ISMB
Dhiraj K. Pathak, Eric P. Hoffman, Mark W. Perlin