Eric C. Rouchka

56 papers A 4C 7Journal 35Unranked 10

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation. Nucleic Acids Res. Jae Yeon Hwang, Sungbo Jung, Tae Lim Kook, Eric C. Rouchka, Jinwoong Bok, Juw Won Park
2018	J	`jnl`	DRETools: A tool-suite for differential RNA editing detection. F1000Research Tyler Weirick, Patrick J. Trainor, Eric C. Rouchka, Andrew P. DeFilippis, Shizuka Uchida
2017	—	`conf`	Circular RNA Detection from High-throughput Sequencing. RACS Mohamed Chaabane, Eric C. Rouchka, Juw Won Park
2017	J	`jnl`	Correction to: Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2017: bioinformatics. BMC Bioinform. Eric C. Rouchka, Julia Chariker, David Tieri, Juw Won Park
2017	J	`jnl`	Identification of successful mentoring communities using network-based analysis of mentor-mentee relationships across Nobel laureates. Scientometrics Julia H. Chariker, Yihang Zhang, John R. Pani, Eric C. Rouchka
2017	J	`jnl`	Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. BMC Bioinform. Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai
2016	J	`jnl`	Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains
2016	—	`conf`	Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets. ICCABS Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka
2016	J	`jnl`	rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic Acids Res. Juw Won Park, Sungbo Jung, Eric C. Rouchka, Yu-Ting Tseng, Yi Xing
2015	—	`conf`	A less biased analysis of metalloproteins' coordination geometries. BCB Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N. B. Moseley
2015	J	`jnl`	Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015. BMC Bioinform. Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison
2014	—	`conf`	A comparison of combined p-value methods for gene differential expression using RNA-seq data. BCB Abdallah M. Eteleeb, Hunter N. B. Moseley, Eric C. Rouchka
2014	J	`jnl`	Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014. BMC Bioinform. Eric C. Rouchka, Julia H. Chariker
2014	J	`jnl`	Transcriptomic characterization of short duration endoplasmic reticulum stress on cultured human proximal tubule cells. BMC Bioinform. Yan Zhang, Michelle Barati, Ignacio Munoz, Ming Li, Danny Wilkey, Eric C. Rouchka, Michael Merchant
2014	J	`jnl`	UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm? BMC Bioinform. Benjamin J. Harrison, Robert M. Flight, Abdallah M. Eteleeb, Eric C. Rouchka, Jeffrey C. Petruska
2013	—	`conf`	An Island-Based Approach for Differential Expression Analysis. BCB Abdallah Eteleeb, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
2013	J	`jnl`	Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013. BMC Bioinform. Eric C. Rouchka, Robert M. Flight
2012	J	`jnl`	AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities. BMC Bioinform. Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
2012	—	`conf`	Finding Data in DNA: Computer Forensic Investigations of Living Organisms. ICDF2C Marc Beck, Eric C. Rouchka, Roman V. Yampolskiy
2012	—	`conf`	Poster: Image registration and visualization tool for in-situ gene expression images. ICCABS Ernur Saka, Eric C. Rouchka
2012	J	`jnl`	Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. BMC Bioinform. Eric C. Rouchka, Robert M. Flight, Hunter N. B. Moseley
2012	J	`jnl`	RNASeq profiling of UTR expression during neuronal plasticity. BMC Bioinform. Benjamin J. Harrison, Robert M. Flight, Abdallah Eteleeb, Eric C. Rouchka, Jeffrey C. Petruska
2012	J	`jnl`	Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration. BMC Bioinform. Gopinath Rajadinakaran, Huifang Sun, Claire Rinehart, Eric C. Rouchka, Michael E. Smith
2011	C	`conf`	A Heuristic Algorithm for Detecting Intercellular Interactions. BIBE Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
2011	J	`jnl`	Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics. BMC Bioinform. Dazhuo Li, Eric C. Rouchka
2011	C	`conf`	Interval Trees for Detection of Overlapping Genetic Entities. BIBE Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
2011	J	`jnl`	Meta-analysis of gene expression changes in response to radiation exposure. BMC Bioinform. John Kirtley, Eric C. Rouchka, Robert M. Flight, Palaniappan Sethu, John W. Eaton, Robert S. Keynton
2011	J	`jnl`	Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. BMC Bioinform. Eric C. Rouchka, Robert M. Flight, Ramin Homayouni
2011	J	`jnl`	Reduced HyperBF Networks: Regularization by Explicit Complexity Reduction and Scaled Rprop-Based Training. IEEE Trans. Neural Networks Rami N. Mahdi, Eric C. Rouchka
2011	J	`jnl`	categoryCompare: high-throughput data meta-analysis using gene annotations. BMC Bioinform. Robert M. Flight, Jeffrey C. Petruska, Benjamin J. Harrison, Eric C. Rouchka
2010	C	`conf`	A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering. ICMLA Dazhuo Li, Fahim Mohammad, Eric C. Rouchka
2010	J	`jnl`	Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data. BMC Bioinform. Eric C. Rouchka, Diego E. Montoya-Durango, Vilius Stribinskis, Kenneth S. Ramos, Ted Kalbfleisch
2010	J	`jnl`	DNA-based random number generation in security circuitry. Biosyst. Christy M. Gearheart, Benjamin Arazi, Eric C. Rouchka
2010	J	`jnl`	Design of a DNA-based shift register. BMC Bioinform. Christy M. Gearheart, Eric C. Rouchka, Benjamin Arazi
2010	—	`conf`	Phylogenomic Analysis Using Bayesian Congruence Measuring. BICoB Dazhuo Li, Eric C. Rouchka, Patrick Shafto
2010	J	`jnl`	Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010. BMC Bioinform. Eric C. Rouchka, Robert M. Flight, Claire Rinehart
2010	J	`jnl`	Statistical analysis of multiple significance test methods for differential proteomics. BMC Bioinform. Bing Wang, Fahim Mohammad, Jun Zhang, Xinmin Yin, Eric C. Rouchka, Xiang Zhang
2009	—	`conf`	Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements. BICoB Eric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper
2009	C	`conf`	Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU. SNPD Dar-Jen Chang, Ahmed H. Desoky, Ming Ouyang, Eric C. Rouchka
2009	C	`conf`	Feature Selection in Cancer Classification from mRNA Data Based on Localized Dimension Reduction. ICMLA Rami N. Mahdi, Eric C. Rouchka
2009	J	`jnl`	Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009. BMC Bioinform. Eric C. Rouchka, Julia Krushkal
2008	J	`jnl`	Buffered codons in human transcriptional units. BMC Bioinform. Rami N. Mahdi, Eric C. Rouchka
2008	C	`conf`	Model Based Unsupervised Learning Guided by Abundant Background Samples. ICMLA Rami N. Mahdi, Eric C. Rouchka
2008	J	`jnl`	Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008. BMC Bioinform. Eric C. Rouchka, Julia Krushkal, Daniel Goldowitz
2008	J	`jnl`	Random number generation for DNA-based security circuitry. BMC Bioinform. Christy M. Bogard, Eric C. Rouchka, Benjamin Arazi
2008	J	`jnl`	Techniques for the analysis of trichome BMC Bioinform. Joseph Morris, Eric C. Rouchka, David Schultz
2007	C	`conf`	Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction. CIBCB Kuo-Chen Li, Dar-Jen Chang, Eric C. Rouchka, Yuan Yan Chen
2007	J	`jnl`	rMotifGen: random motif generator for DNA and protein sequences. BMC Bioinform. Eric C. Rouchka, C. Timothy Hardin
2006	J	`jnl`	Aligning DNA sequences using dynamic programming. ACM Crossroads Eric C. Rouchka
2005	A	`conf`	Comparison of Current BLAST Software on Nucleotide Sequences. IPDPS I. Elizabeth Cha, Eric C. Rouchka
2005	—	`conf`	DNA motif detection using particle swarm optimization and expectation-maximization. SIS C. Timothy Hardin, Eric C. Rouchka
2005	J	`jnl`	MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays. BMC Bioinform. Eric C. Rouchka, Abdelnaby Khalyfa, Nigel G. F. Cooper
2003	J	`jnl`	Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res. William A. Thompson, Eric C. Rouchka, Charles E. Lawrence
2000	A	`conf`	UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States
1999	A	`conf`	Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB Thomas W. Blackwell, Eric C. Rouchka, David J. States
1998	A	`conf`	Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB Eric C. Rouchka, David J. States