Eric Bonnet

13 papers Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
GNNenrich: a novel method for pathway enrichment analysis based on graph neural network.
Bioinform.
Mallek Mziou-Sallami, Pierrick Roger, Arnaud Gloaguen, Claire Dandine-Roulland, Thierry Jiogho Ngaho, Solène Brohard, Kévin Muret, Florian Sandron, Eric Bonnet, Jean-Francois Deleuze, Edith Le Floch, Vincent Meyer
2020 J jnl
RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis.
Database J. Biol. Databases Curation
Vidisha Singh, George D. Kalliolias, Marek Ostaszewski, Maëva Veyssiere, Eleftherios Pilalis, Piotr Gawron, Alexander Mazein, Eric Bonnet, Elisabeth Petit-Teixeira, Anna Niarakis
2019 J jnl
Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.
Briefings Bioinform.
Arnau Montagud, Pauline Traynard, Loredana Martignetti, Eric Bonnet, Emmanuel Barillot, Andrei Yu. Zinovyev, Laurence Calzone
2016 J jnl
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages.
R J.
Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Yu. Zinovyev, Eric Bonnet
2015 J jnl
Integrative Multi-omics Module Network Inference with Lemon-Tree.
PLoS Comput. Biol.
Eric Bonnet, Laurence Calzone, Tom Michoel
2015 J jnl
NaviCell Web Service for network-based data visualization.
Nucleic Acids Res.
Eric Bonnet, Eric Viara, Inna Kuperstein, Laurence Calzone, David P. A. Cohen, Emmanuel Barillot, Andrei Yu. Zinovyev
2013 J jnl
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
BMC Syst. Biol.
Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, Andrei Yu. Zinovyev
2013 J jnl
OCSANA: optimal combinations of interventions from network analysis.
Bioinform.
Paola Vera-Licona, Eric Bonnet, Emmanuel Barillot, Andrei Yu. Zinovyev
2010 J jnl
Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.
Bioinform.
Eric Bonnet, Tom Michoel, Yves Van de Peer
2010 J jnl
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bioinform.
Eric Bonnet, Ying He, Kenny Billiau, Yves Van de Peer
2007 J jnl
Validating module network learning algorithms using simulated data.
BMC Bioinform.
Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
2006 — conf
Scalable hardware accelerator for comparing DNA and protein sequences.
Infoscale
Philippe Faes, Bram Minnaert, Mark Christiaens, Eric Bonnet, Yvan Saeys, Dirk Stroobandt, Yves Van de Peer
2004 J jnl
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
Bioinform.
Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer