Ergin Soysal

17 papers B 1Misc 5Journal 7Unranked 3
YearRankTypeTitle / Venue / Authors
2019 J jnl
Cohort selection for clinical trials: n2c2 2018 shared task track 1.
J. Am. Medical Informatics Assoc.
Amber Stubbs, Michele Filannino, Ergin Soysal, Samuel Henry, Özlem Uzuner
2019 — conf
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP.
MedInfo
Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu
2018 J jnl
CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
J. Am. Medical Informatics Assoc.
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu
2018 J jnl
DataMed - an open source discovery index for finding biomedical datasets.
J. Am. Medical Informatics Assoc.
Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu
2017 J jnl
A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).
J. Am. Medical Informatics Assoc.
Yonghui Wu, Joshua C. Denny, S. Trent Rosenbloom, Randolph A. Miller, Dario A. Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu
2017 Misc conf
CLAMP - A User-Centric Clinical Natural Language Processing Toolkit.
AMIA
Hua Xu, Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu
2017 — conf
Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients.
CRI
Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu
2016 Misc conf
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System.
AMIA
Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016 Misc conf
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.
AMIA
Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016 J jnl
Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature.
BMC Syst. Biol.
Yaoyun Zhang, Heng-Yi Wu, Jun Xu, Jingqi Wang, Ergin Soysal, Lang Li, Hua Xu
2015 J jnl
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.
BMC Syst. Biol.
Liang-Chin Huang, Ergin Soysal, W. Jim Zheng, Zhongming Zhao, Hua Xu, Jingchun Sun
2015 Misc conf
Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system.
AMIA
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Hua Xu
2015 — conf
UTH-CCB: The Participation of the SemEval 2015 Challenge - Task 14.
SemEval@NAACL-HLT
Jun Xu, Yaoyun Zhang, Jingqi Wang, Yonghui Wu, Min Jiang, Ergin Soysal, Hua Xu
2014 Misc conf
Identifying Metastases from Pathology Reports in Lung Cancer Patients.
AMIA
Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu
2012 B conf
Security Standards for Electronic Health Records.
ASONAM
Öznur Esra Par, Ergin Soysal
2010 J jnl
Design and evaluation of an ontology based information extraction system for radiological reports.
Comput. Biol. Medicine
Ergin Soysal, Ilyas Cicekli, Nazife Baykal
2010 — —
Ontology based information extraction on free text radiological reports using natural language processing approach ; Serbest metin radyoloji raporlarından, doğal dil işleme yaklaşımları kullanılarak ontoloji temelli enformasyon çıkarımı.
Ergin Soysal