Eran Halperin - RankMe

102 papers A* 14B 20C 1Misc 1Journal 59Unranked 7

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Guided Discrete Diffusion for Electronic Health Record Generation. Trans. Mach. Learn. Res. Jun Han, Zixiang Chen, Yongqian Li, Yiwen Kou, Eran Halperin, Robert E. Tillman, Quanquan Gu
2025	A*	`conf`	Memorize and Rank: Elevating Large Language Models for Clinical Diagnosis Prediction. AAAI Mingyu Derek Ma, Xiaoxuan Wang, Yijia Xiao, Anthony Cuturrufo, Vijay S. Nori, Eran Halperin, Wei Wang
2025	J	`jnl`	Memorize and Rank: Elevating Large Language Models for Clinical Diagnosis Prediction. CoRR Mingyu Derek Ma, Xiaoxuan Wang, Yijia Xiao, Anthony Cuturrufo, Vijay S. Nori, Eran Halperin, Wei Wang
2024	J	`jnl`	Guided Discrete Diffusion for Electronic Health Record Generation. CoRR Zixiang Chen, Jun Han, Yongqian Li, Yiwen Kou, Eran Halperin, Robert E. Tillman, Quanquan Gu
2024	J	`jnl`	Personalized mood prediction from patterns of behavior collected with smartphones. npj Digit. Medicine Brunilda Balliu, Chris Douglas, Darsol Seok, Liat Shenhav, Yue Wu, Doxa Chatzopoulou, William Kaiser, Victor Chen, Jennifer Kim, Sandeep Deverasetty, Inna Arnaudova, Robert Gibbons, Eliza Congdon, Michelle G. Craske, Nelson B. Freimer, Eran Halperin, Sriram Sankararaman, Jonathan Flint
2023	—	`conf`	Collecting data when missingness is unknown: a method for improving model performance given under-reporting in patient populations. CHIL Kevin Wu, Dominik Dahlem, Christopher Hane, Eran Halperin, James Zou
2023	J	`jnl`	Surpassing GPT-4 Medical Coding with a Two-Stage Approach. CoRR Zhichao Yang, Sanjit Singh Batra, Joel Stremmel, Eran Halperin
2023	—	`conf`	Understanding and Predicting the Effect of Environmental Factors on People with Type 2 Diabetes. CHIL Kailas Vodrahalli, Gregory D. Lyng, Brian L. Hill, Kimmo Kärkkäinen, Jeffrey Hertzberg, James Zou, Eran Halperin
2023	J	`jnl`	XAIQA: Explainer-Based Data Augmentation for Extractive Question Answering. CoRR Joel Stremmel, Ardavan Saeedi, Hamid Hassanzadeh, Sanjit S. Batra, Jeffrey Hertzberg, Jaime Murillo, Eran Halperin
2022	J	`jnl`	Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS Comput. Biol. Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R. Garud
2022	—	`conf`	Extend and Explain: Interpreting Very Long Language Models. ML4H@NeurIPS Joel Stremmel, Brian L. Hill, Jeffrey Hertzberg, Jaime Murillo, Llewelyn Allotey, Eran Halperin
2022	J	`jnl`	Extend and Explain: Interpreting Very Long Language Models. CoRR Joel Stremmel, Brian L. Hill, Jeffrey Hertzberg, Jaime Murillo, Llewelyn Allotey, Eran Halperin
2021	J	`jnl`	Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. npj Digit. Medicine Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, SriniVas R. Sadda, Eran Halperin
2021	J	`jnl`	The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis. Frontiers Bioinform. Elior Rahmani, Brandon Jew, Eran Halperin
2021	J	`jnl`	Virtual reality-based conflict resolution: The impact of immersive 360° video on changing view points and moral judgment in the context of violent intergroup conflict. New Media Soc. Béatrice S. Hasler, Daniel H. Landau, Yossi Hasson, Noa Schori-Eyal, Jonathan Giron, Jonathan Levy, Eran Halperin, Doron Friedman
2020	J	`jnl`	Compositional Lotka-Volterra describes microbial dynamics in the simplex. PLoS Comput. Biol. Tyler A. Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe'er
2019	B	`conf`	Distinguishing Biological from Technical Sources of Variation Using a Combination of Methylation Datasets. RECOMB Mike Thompson, Zeyuan Johnson Chen, Elior Rahmani, Eran Halperin
2019	J	`jnl`	Modeling the temporal dynamics of the gut microbial community in adults and infants. PLoS Comput. Biol. Liat Shenhav, Ori Furman, Leah Briscoe, Mike Thompson, Justin D. Silverman, Itzhak Mizrahi, Eran Halperin
2018	J	`jnl`	Faucet: streaming de novo assembly graph construction. Bioinform. Roye Rozov, Gil Goldshlager, Eran Halperin, Ron Shamir
2018	B	`conf`	Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic Studies. RECOMB Elior Rahmani, Regev Schweiger, Saharon Rosset, Sriram Sankararaman, Eran Halperin
2018	J	`jnl`	Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. J. Comput. Biol. Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin
2017	B	`conf`	A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. RECOMB Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin
2017	J	`jnl`	Association testing of bisulfite-sequencing methylation data via a Laplace approximation. Bioinform. Omer Weissbrod, Elior Rahmani, Regev Schweiger, Saharon Rosset, Eran Halperin
2017	J	`jnl`	GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Bioinform. Elior Rahmani, Reut Yedidim, Liat Shenhav, Regev Schweiger, Omer Weissbrod, Noah Zaitlen, Eran Halperin
2017	J	`jnl`	Recycler: an algorithm for detecting plasmids from de novo assembly graphs. Bioinform. Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, Ron Shamir
2017	B	`conf`	Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. RECOMB Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin
2015	J	`jnl`	A Note on the Relations Between Spatio-Genetic Models. J. Comput. Biol. Yael Baran, Eran Halperin
2015	J	`jnl`	Inferring parental genomic ancestries using pooled semi-Markov processes. Bioinform. James Y. Zou, Eran Halperin, Esteban Gonzàlez Burchard, Sriram Sankararaman
2015	C	`conf`	Multiple-Ancestor Localization for Recently Admixed Individuals. WABI Yaron Margalit, Yael Baran, Eran Halperin
2014	J	`jnl`	EPIQ - efficient detection of SNP-SNP epistatic interactions for quantitative traits. Bioinform. Ya'ara Arkin, Elior Rahmani, Marcus E. Kleber, Reijo Laaksonen, Winfried März, Eran Halperin
2014	J	`jnl`	Fast lossless compression via cascading Bloom filters. BMC Bioinform. Roye Rozov, Ron Shamir, Eran Halperin
2014	J	`jnl`	Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE). PLoS Comput. Biol. Doron Shem-Tov, Eran Halperin
2013	J	`jnl`	Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin
2013	J	`jnl`	CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. J. Comput. Biol. Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
2013	B	`conf`	Learning Natural Selection from the Site Frequency Spectrum. RECOMB Roy Ronen, Nitin Udpa, Eran Halperin, Vineet Bafna
2013	J	`jnl`	Probabilistic Inference of Viral Quasispecies Subject to Recombination. J. Comput. Biol. Armin Töpfer, Osvaldo Zagordi, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel
2013	B	`conf`	eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. RECOMB Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin
2013	J	`jnl`	eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. J. Comput. Biol. Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Christine F. Skibola, Eleazar Eskin, Eran Halperin
2012	B	`conf`	CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. RECOMB Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
2012	J	`jnl`	Fast and accurate inference of local ancestry in Latino populations. Bioinform. Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin
2012	J	`jnl`	Haplotype reconstruction using perfect phylogeny and sequence data. BMC Bioinform. Anatoly Efros, Eran Halperin
2012	J	`jnl`	Joint Analysis of Multiple Metagenomic Samples. PLoS Comput. Biol. Yael Baran, Eran Halperin
2012	J	`jnl`	MGMR: leveraging RNA-Seq population data to optimize expression estimation. BMC Bioinform. Roye Rozov, Eran Halperin, Ron Shamir
2012	B	`conf`	Probabilistic Inference of Viral Quasispecies Subject to Recombination. RECOMB Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel
2011	J	`jnl`	Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. J. Comput. Biol. Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
2011	J	`jnl`	Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin
2011	B	`conf`	Pedigree Reconstruction Using Identity by Descent. RECOMB Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin
2011	J	`jnl`	Pedigree Reconstruction Using Identity by Descent. J. Comput. Biol. Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin
2010	B	`conf`	Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. RECOMB Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
2010	J	`jnl`	Haplotype Inference in Complex Pedigrees. J. Comput. Biol. Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp
2010	J	`jnl`	miRNAkey: a software for microRNA deep sequencing analysis. Bioinform. Roy Ronen, Ido Gan, Shira Modai, Alona Sukacheov, Gideon Dror, Eran Halperin, Noam Shomron
2009	B	`conf`	Haplotype Inference in Complex Pedigrees. RECOMB Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp
2009	J	`jnl`	Increasing the Power of Association Studies by Imputation-based Sparse Tag SNP Selection. Commun. Inf. Syst. Ofir Davidovich, Eran Halperin, Gad Kimmel, Ron Shamir
2009	J	`jnl`	Inference of locus-specific ancestry in closely related populations. Bioinform. Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin
2008	B	`conf`	On the Inference of Ancestries in Admixed Populations. RECOMB Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan
2007	A*	`conf`	A rigorous analysis of population stratification with limited data. SODA Kamalika Chaudhuri, Eran Halperin, Satish Rao, Shuheng Zhou
2007	J	`jnl`	Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice. IEEE ACM Trans. Comput. Biol. Bioinform. Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz
2007	B	`conf`	An Efficient and Accurate Graph-Based Approach to Detect Population Substructure. RECOMB Srinath Sridhar, Satish Rao, Eran Halperin
2007	J	`jnl`	HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling. Bioinform. Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin
2007	J	`jnl`	Integrality Ratio for Group Steiner Trees and Directed Steiner Trees. SIAM J. Comput. Eran Halperin, Guy Kortsarz, Robert Krauthgamer, Aravind Srinivasan, Nan Wang
2006	J	`jnl`	A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions. J. Bioinform. Comput. Biol. Eleazar Eskin, Roded Sharan, Eran Halperin
2006	J	`jnl`	An improved approximation algorithm for vertex cover with hard capacities. J. Comput. Syst. Sci. Rajiv Gandhi, Eran Halperin, Samir Khuller, Guy Kortsarz, Aravind Srinivasan
2006	—	`conf`	Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction. ICALP (1) Guy E. Blelloch, Kedar Dhamdhere, Eran Halperin, R. Ravi, Russell Schwartz, Srinath Sridhar
2006	J	`jnl`	HAPLOFREQ-Estimating Haplotype Frequencies Efficiently. J. Comput. Biol. Eran Halperin, Elad Hazan
2006	B	`conf`	SNP and Haplotype Analysis - Algorithms and Applications. CPM Eran Halperin
2006	Misc	`conf`	Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees. International Conference on Computational Science (2) Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz
2005	J	`jnl`	Asymmetric J. ACM Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy Kortsarz, Robert Krauthgamer, Joseph Naor
2005	B	`conf`	HAPLOFREQ - Estimating Haplotype Frequencies E.ciently. RECOMB Eran Halperin, Elad Hazan
2005	J	`jnl`	Performance aspects of distributed caches using TTL-based consistency. Theor. Comput. Sci. Edith Cohen, Eran Halperin, Haim Kaplan
2005	—	`conf`	Tag SNP selection in genotype data for maximizing SNP prediction accuracy. ISMB (Supplement of Bioinformatics) Eran Halperin, Gad Kimmel, Ron Shamir
2005	J	`jnl`	The minimum-entropy set cover problem. Theor. Comput. Sci. Eran Halperin, Richard M. Karp
2004	A*	`conf`	Asymmetric k-center is log STOC Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy Kortsarz, Joseph Naor
2004	J	`jnl`	Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinform. Eran Halperin, Eleazar Eskin
2004	J	`jnl`	MAX CUT in cubic graphs. J. Algorithms Eran Halperin, Dror Livnat, Uri Zwick
2004	B	`conf`	Perfect phylogeny and haplotype assignment. RECOMB Eran Halperin, Richard M. Karp
2004	A*	`conf`	The Minimum-Entropy Set Cover Problem. ICALP Eran Halperin, Richard M. Karp
2003	A*	`conf`	A stochastic process on the hypercube with applications to peer-to-peer networks. STOC Micah Adler, Eran Halperin, Richard M. Karp, Vijay V. Vazirani
2003	A*	`conf`	An Improved Approximation Algorithm for Vertex Cover with Hard Capacities. ICALP Rajiv Gandhi, Eran Halperin, Samir Khuller, Guy Kortsarz, Aravind Srinivasan
2003	—	`conf`	Detecting protein sequence conservation via metric embeddings. ISMB (Supplement of Bioinformatics) Eran Halperin, Jeremy Buhler, Richard M. Karp, Robert Krauthgamer, Ben Westover
2003	J	`jnl`	Handling Long Targets and Errors in Sequencing by Hybridization. J. Comput. Biol. Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir
2003	A*	`conf`	Integrality ratio for group Steiner trees and directed steiner trees. SODA Eran Halperin, Guy Kortsarz, Robert Krauthgamer, Aravind Srinivasan, Nan Wang
2003	B	`conf`	Large scale reconstruction of haplotypes from genotype data. RECOMB Eleazar Eskin, Eran Halperin, Richard M. Karp
2003	A*	`conf`	Polylogarithmic inapproximability. STOC Eran Halperin, Robert Krauthgamer
2003	J	`jnl`	Reachability and Distance Queries via 2-Hop Labels. SIAM J. Comput. Edith Cohen, Eran Halperin, Haim Kaplan, Uri Zwick
2003	J	`jnl`	Tight lower bounds for the asymmetric k-center problem Electron. Colloquium Comput. Complex. Eran Halperin, Guy Kortsarz, Robert Krauthgamer
2002	J	`jnl`	A unified framework for obtaining improved approximation algorithms for maximum graph bisection problems. Random Struct. Algorithms Eran Halperin, Uri Zwick
2002	J	`jnl`	Coloring k-colorable graphs using relatively small palettes. J. Algorithms Eran Halperin, Ram Nathaniel, Uri Zwick
2002	B	`conf`	Handling long targets and errors in sequencing by hybridization. RECOMB Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir
2002	—	`conf`	Improved Approximation Algorithms for the Partial Vertex Cover Problem. APPROX Eran Halperin, Aravind Srinivasan
2002	J	`jnl`	Improved Approximation Algorithms for the Vertex Cover Problem in Graphs and Hypergraphs. SIAM J. Comput. Eran Halperin
2002	A*	`conf`	MAX CUT in cubic graphs. SODA Eran Halperin, Dror Livnat, Uri Zwick
2002	A*	`conf`	Reachability and distance queries via 2-hop labels. SODA Edith Cohen, Eran Halperin, Haim Kaplan, Uri Zwick
2001	B	`conf`	A Unified Framework for Obtaining Improved Approximation Algorithms for Maximum Graph Bisection Problems. IPCO Eran Halperin, Uri Zwick
2001	J	`jnl`	Approximation Algorithms for MAX 4-SAT and Rounding Procedures for Semidefinite Programs. J. Algorithms Eran Halperin, Uri Zwick
2001	J	`jnl`	Coloring k-colorable graphs using relatively small palettes CoRR Eran Halperin, Ram Nathaniel, Uri Zwick
2001	A*	`conf`	Coloring k-colorable graphs using smaller palettes. SODA Eran Halperin, Ram Nathaniel, Uri Zwick
2001	A*	`conf`	Combinatorial approximation algorithms for the maximum directed cut problem. SODA Eran Halperin, Uri Zwick
2001	A*	`conf`	Performance Aspects of Distributed Caches Using TTL-Based Consistency. ICALP Edith Cohen, Eran Halperin, Haim Kaplan
2000	A*	`conf`	Improved approximation algorithms for the vertex cover problem in graphs and hypergraphs. SODA Eran Halperin
1999	B	`conf`	Approximation Algorithms for MAX 4-SAT and Rounding Procedures for Semidefinite Programs. IPCO Eran Halperin, Uri Zwick
1999	J	`jnl`	FramePlus: aligning DNA to protein sequences. Bioinform. Eran Halperin, Simchon Faigler, Raveh Gill-More
1998	J	`jnl`	Bipartite subgraphs of integer weighted graphs. Discret. Math. Noga Alon, Eran Halperin