Eoin Fahy

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Playbook workflow builder: Interactive construction of bioinformatics workflows.
PLoS Comput. Biol.
Daniel J. B. Clarke, John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, Anna I. Byrd, Mano Ram Maurya, Sumana Srinivasan, Keyang Yu, Varduhi Petrosyan, Matthew E. Roth, Miroslav Milinkov, Charles Hadley King, Jeet Kiran Vora, Jonathon Keeney, Christopher Nemarich, William Khan, Alexander Lachmann, Nasheath Ahmed, Alexandra Agris, Juncheng Pan, Srinivasan Ramachandran, Eoin Fahy, Emmanuel Esquivel, Aleksandar Mihajlovic, Bosko Jevtic, Vuk Milinovic, Sean Kim, Patrick McNeely, Tianyi Wang, Eric Wenger, Miguel A. Brown, Alexander Sickler, Yuankun Zhu, Sherry L. Jenkins, Philip D. Blood, Deanne M. Taylor, Adam C. Resnick, Raja Mazumder, Aleksandar Milosavljevic, Shankar Subramaniam, Avi Ma'ayan
2021 J jnl
LipidFinder 2.0: advanced informatics pipeline for lipidomics discovery applications.
Bioinform.
Jorge Álvarez-Jarreta, Patricia Rodrigues, Eoin Fahy, Anne O'connor, Anna Price, Caroline Gaud, Simon Andrews, H. Paul Benton, Gary Siuzdak, Jade I Hawksworth, Maria Valdivia-Garcia, Stuart M. Allen, Valerie B. O'Donnell
2019 J jnl
LipidFinder on LIPID MAPS: peak filtering, MS searching and statistical analysis for lipidomics.
Bioinform.
Eoin Fahy, Jorge Álvarez-Jarreta, Christopher J. Brasher, An Nguyen, Jade I Hawksworth, Patricia Rodrigues, Sven Meckelmann, Stuart M. Allen, Valerie B. O'Donnell
2016 J jnl
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.
J. Cheminformatics
Yannick Djoumbou, Roman Eisner, Craig Knox, Leonid L. Chepelev, Janna Hastings, Gareth I. Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart
2016 J jnl
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.
Nucleic Acids Res.
Manish Sud, Eoin Fahy, Dawn Cotter, Kenan Azam, Ilango Vadivelu, Charles F. Burant, Arthur Edison, Oliver Fiehn, Richard M. Higashi, K. Sreekumaran Nair, Susan Sumner, Shankar Subramaniam
2013 J jnl
A combined omics study on activated macrophages - enhanced role of STATs in apoptosis, immunity and lipid metabolism.
Bioinform.
Ashok Reddy Dinasarapu, Shakti Gupta, Mano Ram Maurya, Eoin Fahy, Jun Min, Manish Sud, Merril J. Gersten, Christopher K. Glass, Shankar Subramaniam
2012 J jnl
Template-based combinatorial enumeration of virtual compound libraries for lipids.
J. Cheminformatics
Manish Sud, Eoin Fahy, Shankar Subramaniam
2007 J jnl
LIPID MAPS online tools for lipid research.
Nucleic Acids Res.
Eoin Fahy, Manish Sud, Dawn Cotter, Shankar Subramaniam
2007 J jnl
LMSD: LIPID MAPS structure database.
Nucleic Acids Res.
Manish Sud, Eoin Fahy, Dawn Cotter, Alex Brown, Edward A. Dennis, Christopher K. Glass, Alfred H. Merrill Jr., Robert C. Murphy, Christian R. H. Raetz, David W. Russell, Shankar Subramaniam
2004 J jnl
MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.
Bioinform.
Chittibabu Guda, Eoin Fahy, Shankar Subramaniam
2004 J jnl
MITOPRED: a web server for the prediction of mitochondrial proteins.
Nucleic Acids Res.
Chittibabu Guda, Purnima Guda, Eoin Fahy, Shankar Subramaniam
2004 J jnl
MitoProteome: mitochondrial protein sequence database and annotation system.
Nucleic Acids Res.
Dawn Cotter, Purnima Guda, Eoin Fahy, Shankar Subramaniam