Ender Konukoglu

220 papers A* 16A 2B 1Journal 132Unranked 64

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Single-Parameter Factor-Graph Image Prior. CoRR Tianyang Wang, Ender Konukoglu, Hans-Andrea Loeliger
2026	J	`jnl`	Semi-Supervised Few-Shot Adaptation of Vision-Language Models. CoRR Julio Silva-Rodríguez, Ender Konukoglu
2026	J	`jnl`	Spatial Autoregressive Modeling of DINOv3 Embeddings for Unsupervised Anomaly Detection. CoRR Ertunc Erdil, Nico Schulthess, Guney I. Tombak, Ender Konukoglu
2025	—	`conf`	A Large-Scale Dataset of Gaussian Splats and Their Self-Supervised Pretraining. 3DV Qi Ma, Yue Li, Bin Ren, Nicu Sebe, Ender Konukoglu, Theo Gevers, Luc Van Gool, Danda Pani Paudel
2025	J	`jnl`	A Multi-Centric Anthropomorphic 3D CT Phantom-Based Benchmark Dataset for Harmonization. CoRR Mohammadreza Amirian, Michael Bach, Oscar Alfonso Jiménez del Toro, Christoph Aberle, Roger Schaer, Vincent Andrearczyk, Jean-Félix Maestrati, María Martin Asiain, Kyriakos Flouris, Markus M. Obmann, Clarisse Dromain, Benoît Dufour, Pierre-Alexandre Poletti, Hendrik von Tengg-Kobligk, Rolf Hügli, Martin Kretzschmar, Hatem Alkadhi, Ender Konukoglu, Henning Müller, Bram Stieltjes, Adrien Depeursinge
2025	J	`jnl`	Anatomy Might Be All You Need: Forecasting What to Do During Surgery. CoRR Gary Sarwin, Alessandro Carretta, Victor E. Staartjes, Matteo Zoli, Diego Mazzatenta, Luca Regli, Carlo Serra, Ender Konukoglu
2025	—	`conf`	Anomaly Detection by Clustering DINO Embeddings Using a Dirichlet Process Mixture. MICCAI (3) Nico Schulthess, Ender Konukoglu
2025	J	`jnl`	Anomaly Detection by Clustering DINO Embeddings using a Dirichlet Process Mixture. CoRR Nico Schulthess, Ender Konukoglu
2025	J	`jnl`	CamSAM2: Segment Anything Accurately in Camouflaged Videos. CoRR Yuli Zhou, Guolei Sun, Yawei Li, Yuqian Fu, Luca Benini, Ender Konukoglu
2025	J	`jnl`	CityLoc: 6DoF Pose Distributional Localization for Text Descriptions in Large-Scale Scenes with Gaussian Representation. CoRR Qi Ma, Runyi Yang, Bin Ren, Nicu Sebe, Ender Konukoglu, Luc Van Gool, Danda Pani Paudel
2025	—	`conf`	Conformal Forecasting for Surgical Instrument Trajectory. MICCAI (9) Sara Sangalli, Gary Sarwin, Ertunc Erdil, Carlo Serra, Alessandro Carretta, Victor E. Staartjes, Ender Konukoglu
2025	J	`jnl`	Conformal forecasting for surgical instrument trajectory. CoRR Sara Sangalli, Gary Sarwin, Ertunc Erdil, Alessandro Carretta, Victor E. Staartjes, Carlo Serra, Ender Konukoglu
2025	A*	`conf`	Exploiting Temporal State Space Sharing for Video Semantic Segmentation. CVPR Syed Ariff Syed Hesham, Yun Liu, Guolei Sun, Henghui Ding, Jing Yang, Ender Konukoglu, Xue Geng, Xudong Jiang
2025	J	`jnl`	Exploiting Temporal State Space Sharing for Video Semantic Segmentation. CoRR Syed Ariff Syed Hesham, Yun Liu, Guolei Sun, Henghui Ding, Jing Yang, Ender Konukoglu, Xue Geng, Xudong Jiang
2025	A	`conf`	Generalizable Single-Source Cross-Modality Medical Image Segmentation via Invariant Causal Mechanisms. WACV Boqi Chen, Yuanzhi Zhu, Yunke Ao, Sebastiano Caprara, Reto Sutter, Gunnar Rätsch, Ender Konukoglu, Anna Susmelj
2025	A*	`conf`	Generalized Few-shot 3D Point Cloud Segmentation with Vision-Language Model. CVPR Zhaochong An, Guolei Sun, Yun Liu, Runjia Li, Junlin Han, Ender Konukoglu, Serge J. Belongie
2025	J	`jnl`	Generalized Few-shot 3D Point Cloud Segmentation with Vision-Language Model. CoRR Zhaochong An, Guolei Sun, Yun Liu, Runjia Li, Junlin Han, Ender Konukoglu, Serge J. Belongie
2025	J	`jnl`	Learning to segment anatomy and lesions from disparately labeled sources in brain MRI. CoRR Meva Himmetoglu, Ilja Ciernik, Ender Konukoglu
2025	J	`jnl`	Learning to segment anatomy and lesions from disparately labeled sources in brain MRI. Medical Image Anal. Meva Himmetoglu, Ilja Ciernik, Ender Konukoglu
2025	—	`conf`	Leveraging Self-supervised Pretraining Using Transformers for Enhanced Lung Nodule Detection in CT Scans. MLMI@MICCAI Jiaying Liu, Qi Ma, Anna Corti, Valentina D. A. Corino, Luca T. Mainardi, Ender Konukoglu
2025	—	`conf`	Localized FNO for Spatiotemporal Hemodynamic Upsampling in Aneurysm MRI. GRAIL/RIME@MICCAI Kyriakos Flouris, Moritz Halter, Yolanne Yi Ran Lee, Samuel Castonguay, Luuk Jacobs, Pietro Dirix, Jonathan Nestmann, Sebastian Kozerke, Ender Konukoglu
2025	J	`jnl`	Localized FNO for Spatiotemporal Hemodynamic Upsampling in Aneurysm MRI. CoRR Kyriakos Flouris, Moritz Halter, Yolanne Yi Ran Lee, Samuel Castonguay, Luuk Jacobs, Pietro Dirix, Jonathan Nestmann, Sebastian Kozerke, Ender Konukoglu
2025	J	`jnl`	MedVSR: Medical Video Super-Resolution with Cross State-Space Propagation. CoRR Xinyu Liu, Guolei Sun, Cheng Wang, Yixuan Yuan, Ender Konukoglu
2025	A*	`conf`	Multimodality Helps Few-shot 3D Point Cloud Semantic Segmentation. ICLR Zhaochong An, Guolei Sun, Yun Liu, Runjia Li, Min Wu, Ming-Ming Cheng, Ender Konukoglu, Serge J. Belongie
2025	J	`jnl`	Neural Vector Fields for Implicit Surface Representation and Inference. Int. J. Comput. Vis. Edoardo Mello Rella, Ajad Chhatkuli, Ender Konukoglu, Luc Van Gool
2025	J	`jnl`	SceneSplat: Gaussian Splatting-based Scene Understanding with Vision-Language Pretraining. CoRR Yue Li, Qi Ma, Runyi Yang, Huapeng Li, Mengjiao Ma, Bin Ren, Nikola Popovic, Nicu Sebe, Ender Konukoglu, Theo Gevers, Luc Van Gool, Martin R. Oswald, Danda Pani Paudel
2025	J	`jnl`	Tera-MIND: Tera-scale mouse brain simulation via spatial mRNA-guided diffusion. CoRR Jiqing Wu, Ingrid Berg, Yawei Li, Ender Konukoglu, Viktor H. Koelzer
2025	A*	`conf`	Uncertainty modeling for fine-tuned implicit functions. ICLR Anna Susmelj, Mael Macuglia, Natasa Tagasovska, Reto Sutter, Sebastiano Caprara, Jean-Philippe Thiran, Ender Konukoglu
2025	J	`jnl`	When SAM2 meets video camouflaged object segmentation: a comprehensive evaluation and adaptation. Vis. Intell. Yuli Zhou, Guolei Sun, Yawei Li, Guo-Sen Xie, Luca Benini, Ender Konukoglu
2024	—	`conf`	Comparing Stability and Discriminatory Power of Hand-Crafted Versus Deep Radiomics: A 3D-Printed Anthropomorphic Phantom Study. EUVIP Oscar Alfonso Jiménez del Toro, Christoph Aberle, Roger Schaer, Michael Bach, Kyriakos Flouris, Ender Konukoglu, Bram Stieltjes, Markus M. Obmann, André Anjos, Henning Müller, Adrien Depeursinge
2024	J	`jnl`	Diffusion-Based Semantic Segmentation of Lumbar Spine MRI Scans of Lower Back Pain Patients. CoRR Maria Monzon, Thomas Iff, Ender Konukoglu, Catherine R. Jutzeler
2024	—	`conf`	Do Vision Foundation Models Enhance Domain Generalization in Medical Image Segmentation? ECCV Workshops (18) Kerem Cekmeceli, Meva Himmetoglu, Guney I. Tombak, Anna Susmelj, Ertunc Erdil, Ender Konukoglu
2024	J	`jnl`	Do Vision Foundation Models Enhance Domain Generalization in Medical Image Segmentation? CoRR Kerem Cekmeceli, Meva Himmetoglu, Guney I. Tombak, Anna Susmelj, Ertunc Erdil, Ender Konukoglu
2024	J	`jnl`	Editorial for the Special Issue on the 2022 Medical Imaging with Deep Learning Conference. Medical Image Anal. Shadi Albarqouni, Christian F. Baumgartner, Qi Dou, Ender Konukoglu, Bjoern H. Menze, Archana Venkataraman
2024	—	`conf`	Energy-Based Prior Latent Space Diffusion Model for Reconstruction of Lumbar Vertebrae from Thick Slice MRI. DGM4MICCAI@MICCAI Yanke Wang, Yolanne Yi Ran Lee, Aurelio Dolfini, Markus Reischl, Ender Konukoglu, Kyriakos Flouris
2024	J	`jnl`	Energy-Based Prior Latent Space Diffusion model for Reconstruction of Lumbar Vertebrae from Thick Slice MRI. CoRR Yanke Wang, Yolanne Yi Ran Lee, Aurelio Dolfini, Markus Reischl, Ender Konukoglu, Kyriakos Flouris
2024	J	`jnl`	Explicit and data-Efficient Encoding via Gradient Flow. CoRR Kyriakos Flouris, Anna Volokitin, Gustav Bredell, Ender Konukoglu
2024	J	`jnl`	Federated Feature Augmentation and Alignment. IEEE Trans. Pattern Anal. Mach. Intell. Tianfei Zhou, Ye Yuan, Binglu Wang, Ender Konukoglu
2024	J	`jnl`	Generalizable Single-Source Cross-modality Medical Image Segmentation via Invariant Causal Mechanisms. CoRR Boqi Chen, Yuanzhi Zhu, Yunke Ao, Sebastiano Caprara, Reto Sutter, Gunnar Rätsch, Ender Konukoglu, Anna Susmelj
2024	J	`jnl`	Image Segmentation in Foundation Model Era: A Survey. CoRR Tianfei Zhou, Fei Zhang, Boyu Chang, Wenguan Wang, Ye Yuan, Ender Konukoglu, Daniel Cremers
2024	A*	`conf`	Implicit Zoo: A Large-Scale Dataset of Neural Implicit Functions for 2D Images and 3D Scenes. NeurIPS Qi Ma, Danda Pani Paudel, Ender Konukoglu, Luc Van Gool
2024	J	`jnl`	Implicit-Zoo: A Large-Scale Dataset of Neural Implicit Functions for 2D Images and 3D Scenes. CoRR Qi Ma, Danda Pani Paudel, Ender Konukoglu, Luc Van Gool
2024	J	`jnl`	Multimodality Helps Few-Shot 3D Point Cloud Semantic Segmentation. CoRR Zhaochong An, Guolei Sun, Yun Liu, Runjia Li, Min Wu, Ming-Ming Cheng, Ender Konukoglu, Serge J. Belongie
2024	J	`jnl`	QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge. CoRR Hongwei Bran Li, Fernando Navarro, Ivan Ezhov, Amirhossein Bayat, Dhritiman Das, Florian Kofler, Suprosanna Shit, Diana Waldmannstetter, Johannes C. Paetzold, Xiaobin Hu, Benedikt Wiestler, Lucas Zimmer, Tamaz Amiranashvili, Chinmay Prabhakar, Christoph Berger, Jonas Weidner, Michelle Alonso-Basanta, Arif Rashid, Ujjwal Baid, Wesam Adel, Deniz Alis, Bhakti Baheti, Yingbin Bai, Ishaan Bhat, Sabri Can Cetindag, Wenting Chen, Li Cheng, Prasad Dutande, Lara Dular, Mustafa A. Elattar, Ming Feng, Shengbo Gao, Henkjan Huisman, Weifeng Hu, Shubham Innani, Wei Jiat, Davood Karimi, Hugo J. Kuijf, Jin Tae Kwak, Hoang Long Le, Xiang Lia, Huiyan Lin, Tongliang Liu, Jun Ma, Kai Ma, Ting Ma, Ilkay Öksüz, Robbie Holland, Arlindo L. Oliveira, Jimut Bahan Pal, Xuan Pei, Maoying Qiao, Anindo Saha, Raghavendra Selvan, Linlin Shen, João Lourenço Silva, Ziga Spiclin, Sanjay N. Talbar, Dadong Wang, Wei Wang, Xiong Wang, Yin Wang, Ruiling Xia, Kele Xu, Yanwu Yan, Mert Yergin, Shuang Yu, Lingxi Zeng, YingLin Zhang, Jiachen Zhao, Yefeng Zheng, Martin Zukovec, Richard K. G. Do, Anton S. Becker, Amber L. Simpson, Ender Konukoglu, András Jakab, Spyridon Bakas, Leo Joskowicz, Bjoern H. Menze
2024	J	`jnl`	ShapeSplat: A Large-scale Dataset of Gaussian Splats and Their Self-Supervised Pretraining. CoRR Qi Ma, Yue Li, Bin Ren, Nicu Sebe, Ender Konukoglu, Theo Gevers, Luc Van Gool, Danda Pani Paudel
2024	J	`jnl`	Uncertainty modeling for fine-tuned implicit functions. CoRR Anna Susmelj, Mael Macuglia, Natasa Tagasovska, Reto Sutter, Sebastiano Caprara, Jean-Philippe Thiran, Ender Konukoglu
2024	—	`conf`	Video Foundation Model for Medical 3D Segmentation. ToothFairy/3DTeethLand/STS@MICCAI Qi Ma, Guolei Sun, Guney I. Tombak, Shipra Jain, Niko Benjamin Huber, Luc Van Gool, Ender Konukoglu
2024	—	`conf`	Vision-Based Neurosurgical Guidance: Unsupervised Localization and Camera-Pose Prediction. MICCAI (6) Gary Sarwin, Alessandro Carretta, Victor E. Staartjes, Matteo Zoli, Diego Mazzatenta, Luca Regli, Carlo Serra, Ender Konukoglu
2024	J	`jnl`	Vision-Based Neurosurgical Guidance: Unsupervised Localization and Camera-Pose Prediction. CoRR Gary Sarwin, Alessandro Carretta, Victor E. Staartjes, Matteo Zoli, Diego Mazzatenta, Luca Regli, Carlo Serra, Ender Konukoglu
2024	J	`jnl`	When SAM2 Meets Video Camouflaged Object Segmentation: A Comprehensive Evaluation and Adaptation. CoRR Yuli Zhou, Guolei Sun, Yawei Li, Luca Benini, Ender Konukoglu
2023	A*	`conf`	Canonical normalizing flows for manifold learning. NeurIPS Kyriakos Flouris, Ender Konukoglu
2023	J	`jnl`	Canonical normalizing flows for manifold learning. CoRR Kyriakos Flouris, Ender Konukoglu
2023	A*	`conf`	Expert load matters: operating networks at high accuracy and low manual effort. NeurIPS Sara Sangalli, Ertunc Erdil, Ender Konukoglu
2023	J	`jnl`	Expert load matters: operating networks at high accuracy and low manual effort. CoRR Sara Sangalli, Ertunc Erdil, Ender Konukoglu
2023	A*	`conf`	Explicitly Minimizing the Blur Error of Variational Autoencoders. ICLR Gustav Bredell, Kyriakos Flouris, Krishna Chaitanya, Ertunc Erdil, Ender Konukoglu
2023	J	`jnl`	Explicitly Minimizing the Blur Error of Variational Autoencoders. CoRR Gustav Bredell, Kyriakos Flouris, Krishna Chaitanya, Ertunc Erdil, Ender Konukoglu
2023	A*	`conf`	FedFA: Federated Feature Augmentation. ICLR Tianfei Zhou, Ender Konukoglu
2023	J	`jnl`	FedFA: Federated Feature Augmentation. CoRR Tianfei Zhou, Ender Konukoglu
2023	J	`jnl`	InOR-Net: Incremental 3-D Object Recognition Network for Point Cloud Representation. IEEE Trans. Neural Networks Learn. Syst. Jiahua Dong, Yang Cong, Gan Sun, Lixu Wang, Lingjuan Lyu, Jun Li, Ender Konukoglu
2023	J	`jnl`	InOR-Net: Incremental 3D Object Recognition Network for Point Cloud Representation. CoRR Jiahua Dong, Yang Cong, Gan Sun, Lixu Wang, Lingjuan Lyu, Jun Li, Ender Konukoglu
2023	—	`conf`	Live Image-Based Neurosurgical Guidance and Roadmap Generation Using Unsupervised Embedding. IPMI Gary Sarwin, Alessandro Carretta, Victor E. Staartjes, Matteo Zoli, Diego Mazzatenta, Luca Regli, Carlo Serra, Ender Konukoglu
2023	J	`jnl`	Live image-based neurosurgical guidance and roadmap generation using unsupervised embedding. CoRR Gary Sarwin, Alessandro Carretta, Victor E. Staartjes, Matteo Zoli, Diego Mazzatenta, Luca Regli, Carlo Serra, Ender Konukoglu
2023	J	`jnl`	Local contrastive loss with pseudo-label based self-training for semi-supervised medical image segmentation. Medical Image Anal. Krishna Chaitanya, Ertunc Erdil, Neerav Karani, Ender Konukoglu
2023	—	`conf`	MultiVT: Multiple-Task Framework for Dentistry. DART@MICCAI Edoardo Mello Rella, Ajad Chhatkuli, Ender Konukoglu, Luc Van Gool
2023	—	`conf`	Outlier Detection in ECG. CinC Omar Atamny, Ardan M. Saguner, Roger Abächerli, Ender Konukoglu
2023	J	`jnl`	Quantification of Predictive Uncertainty via Inference-Time Sampling. CoRR Katarína Tóthová, Lubor Ladicky, Daniel Thul, Marc Pollefeys, Ender Konukoglu
2023	J	`jnl`	Volumetric memory network for interactive medical image segmentation. Medical Image Anal. Tianfei Zhou, Liulei Li, Gustav Bredell, Jianwu Li, Jan Unkelbach, Ender Konukoglu
2023	A	`conf`	Wiener Guided DIP for Unsupervised Blind Image Deconvolution. WACV Gustav Bredell, Ertunc Erdil, Bruno Weber, Ender Konukoglu
2022	J	`jnl`	A 2.5D convolutional neural network for HPV prediction in advanced oropharyngeal cancer. Comput. Biol. Medicine Agustina La Greca Saint-Esteven, Marta Bogowicz, Ender Konukoglu, Oliver Riesterer, Panagiotis Balermpas, Matthias Guckenberger, Stephanie Tanadini-Lang, Janita E. van Timmeren
2022	J	`jnl`	A Field of Experts Prior for Adapting Neural Networks at Test Time. CoRR Neerav Karani, Georg Brunner, Ertunc Erdil, Simin Fei, Kerem Can Tezcan, Krishna Chaitanya, Ender Konukoglu
2022	—	`conf`	Diagnostic Accuracy and Reliability of Deep Learning-Based Human Papillomavirus Status Prediction in Oropharyngeal Cancer. MICAD Agustina La Greca Saint-Esteven, Chiara Marchiori, Marta Bogowicz, Javier Barranco Garcia, Zahra Khodabakhshi, Ender Konukoglu, Oliver Riesterer, Panagiotis Balermpas, Martin Hüllner, A. Cristiano I. Malossi, Matthias Guckenberger, Janita E. van Timmeren, Stephanie Tanadini-Lang
2022	A*	`conf`	ISNAS-DIP: Image-Specific Neural Architecture Search for Deep Image Prior. CVPR Metin Ersin Arican, Ozgur Kara, Gustav Bredell, Ender Konukoglu
2022	—	`ed.`	International Conference on Medical Imaging with Deep Learning, MIDL 2022, 6-8 July 2022, Zurich, Switzerland. MIDL Ender Konukoglu, Bjoern H. Menze, Archana Venkataraman, Christian F. Baumgartner, Qi Dou, Shadi Albarqouni
2022	J	`jnl`	Neural Vector Fields for Surface Representation and Inference. CoRR Edoardo Mello Rella, Ajad Chhatkuli, Ender Konukoglu, Luc Van Gool
2022	—	`conf`	Quantification of Predictive Uncertainty via Inference-Time Sampling. UNSURE@MICCAI Katarína Tóthová, Lubor Ladicky, Daniel Thul, Marc Pollefeys, Ender Konukoglu
2022	A*	`conf`	Rethinking Semantic Segmentation: A Prototype View. CVPR Tianfei Zhou, Wenguan Wang, Ender Konukoglu, Luc Van Gool
2022	J	`jnl`	Rethinking Semantic Segmentation: A Prototype View. CoRR Tianfei Zhou, Wenguan Wang, Ender Konukoglu, Luc Van Gool
2022	J	`jnl`	Sampling Possible Reconstructions of Undersampled Acquisitions in MR Imaging With a Deep Learned Prior. IEEE Trans. Medical Imaging Kerem Can Tezcan, Neerav Karani, Christian F. Baumgartner, Ender Konukoglu
2022	J	`jnl`	Unsupervised Superpixel Generation using Edge-Sparse Embedding. CoRR Jakob Geusen, Gustav Bredell, Tianfei Zhou, Ender Konukoglu
2022	A*	`conf`	Zero Pixel Directional Boundary by Vector Transform. ICLR Edoardo Mello Rella, Ajad Chhatkuli, Yun Liu, Ender Konukoglu, Luc Van Gool
2022	J	`jnl`	Zero Pixel Directional Boundary by Vector Transform. CoRR Edoardo Mello Rella, Ajad Chhatkuli, Yun Liu, Ender Konukoglu, Luc Van Gool
2021	—	`ed.`	Clinical Image-Based Procedures, Distributed and Collaborative Learning, Artificial Intelligence for Combating COVID-19 and Secure and Privacy-Preserving Machine Learning - 10th Workshop, CLIP 2021, Second Workshop, DCL 2021, First Workshop, LL-COVID19 2021, and First Workshop and Tutorial, PPML 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27 and October 1, 2021, Proceedings CLIP/DCL/LL-COVID19/PPML@MICCAI Cristina Oyarzun Laura, M. Jorge Cardoso, Michal Rosen-Zvi, Georgios Kaissis, Marius George Linguraru, Raj Shekhar, Stefan Wesarg, Marius Erdt, Klaus Drechsler, Yufei Chen, Shadi Albarqouni, Spyridon Bakas, Bennett A. Landman, Nicola Rieke, Holger Roth, Xiaoxiao Li, Daguang Xu, Maria Gabrani, Ender Konukoglu, Michal Guindy, Daniel Rueckert, Alexander Ziller, Dmitrii Usynin, Jonathan Passerat-Palmbach
2021	J	`jnl`	Constrained Optimization for Training Deep Neural Networks Under Class Imbalance. CoRR Sara Sangalli, Ertunc Erdil, Andreas M. Hötker, Olivio Donati, Ender Konukoglu
2021	A*	`conf`	Constrained Optimization to Train Neural Networks on Critical and Under-Represented Classes. NeurIPS Sara Sangalli, Ertunc Erdil, Andreas M. Hötker, Olivio Donati, Ender Konukoglu
2021	—	`conf`	Contrastive Learning of Single-Cell Phenotypic Representations for Treatment Classification. MLMI@MICCAI Alexis Perakis, Ali Gorji, Samriddhi Jain, Krishna Chaitanya, Simone Rizza, Ender Konukoglu
2021	J	`jnl`	Contrastive Learning of Single-Cell Phenotypic Representations for Treatment Classification. CoRR Alexis Perakis, Ali Gorji, Samriddhi Jain, Krishna Chaitanya, Simone Rizza, Ender Konukoglu
2021	A*	`conf`	Exploring Cross-Image Pixel Contrast for Semantic Segmentation. ICCV Wenguan Wang, Tianfei Zhou, Fisher Yu, Jifeng Dai, Ender Konukoglu, Luc Van Gool
2021	J	`jnl`	Exploring Cross-Image Pixel Contrast for Semantic Segmentation. CoRR Wenguan Wang, Tianfei Zhou, Fisher Yu, Jifeng Dai, Ender Konukoglu, Luc Van Gool
2021	J	`jnl`	Gradient flow encoding with distance optimization adaptive step size. CoRR Kyriakos Flouris, Anna Volokitin, Gustav Bredell, Ender Konukoglu
2021	—	`conf`	High-Resolution Segmentation of Lumbar Vertebrae from Conventional Thick Slice MRI. MICCAI (1) Federico Turella, Gustav Bredell, Alexander Okupnik, Sebastiano Caprara, Dimitri Graf, Reto Sutter, Ender Konukoglu
2021	J	`jnl`	Hyperspectral Image Super-Resolution with Spectral Mixup and Heterogeneous Datasets. CoRR Ke Li, Dengxin Dai, Ender Konukoglu, Luc Van Gool
2021	J	`jnl`	ISNAS-DIP: Image-Specific Neural Architecture Search for Deep Image Prior. CoRR Metin Ersin Arican, Ozgur Kara, Gustav Bredell, Ender Konukoglu
2021	—	`conf`	Lessons Learned from the Development and Application of Medical Imaging-Based AI Technologies for Combating COVID-19: Why Discuss, What Next. CLIP/DCL/LL-COVID19/PPML@MICCAI Maria Gabrani, Ender Konukoglu, David Beymer, Gustavo Carneiro, Jannis Born, Michal Guindy, Michal Rosen-Zvi
2021	J	`jnl`	Local contrastive loss with pseudo-label based self-training for semi-supervised medical image segmentation. CoRR Krishna Chaitanya, Ertunc Erdil, Neerav Karani, Ender Konukoglu
2021	J	`jnl`	Normative ascent with local gaussians for unsupervised lesion detection. Medical Image Anal. Xiaoran Chen, Nick Pawlowski, Ben Glocker, Ender Konukoglu
2021	—	`conf`	Quality-Aware Memory Network for Interactive Volumetric Image Segmentation. MICCAI (2) Tianfei Zhou, Liulei Li, Gustav Bredell, Jianwu Li, Ender Konukoglu
2021	J	`jnl`	Quality-Aware Memory Network for Interactive Volumetric Image Segmentation. CoRR Tianfei Zhou, Liulei Li, Gustav Bredell, Jianwu Li, Ender Konukoglu
2021	J	`jnl`	Semi-supervised task-driven data augmentation for medical image segmentation. Medical Image Anal. Krishna Chaitanya, Neerav Karani, Christian F. Baumgartner, Ertunc Erdil, Anton S. Becker, Olivio Donati, Ender Konukoglu
2021	—	`conf`	Task-Agnostic Out-of-Distribution Detection Using Kernel Density Estimation. UNSURE/PIPPI@MICCAI Ertunc Erdil, Krishna Chaitanya, Neerav Karani, Ender Konukoglu
2021	J	`jnl`	Test-time adaptable neural networks for robust medical image segmentation. Medical Image Anal. Neerav Karani, Ertunc Erdil, Krishna Chaitanya, Ender Konukoglu
2021	—	`conf`	The OOD Blind Spot of Unsupervised Anomaly Detection. MIDL Matthäus Heer, Janis Postels, Xiaoran Chen, Ender Konukoglu, Shadi Albarqouni
2021	J	`jnl`	Wiener Guided DIP for Unsupervised Blind Image Deconvolution. CoRR Gustav Bredell, Ertunc Erdil, Bruno Weber, Ender Konukoglu
2020	J	`jnl`	Automated quantification of myocardial tissue characteristics from native T1 mapping using neural networks with Bayesian inference for uncertainty-based quality-control. CoRR Esther Puyol-Antón, Bram Ruijsink, Christian F. Baumgartner, Matthew Sinclair, Ender Konukoglu, Reza Razavi, Andrew P. King
2020	A*	`conf`	Contrastive learning of global and local features for medical image segmentation with limited annotations. NeurIPS Krishna Chaitanya, Ertunc Erdil, Neerav Karani, Ender Konukoglu
2020	J	`jnl`	Contrastive learning of global and local features for medical image segmentation with limited annotations. CoRR Krishna Chaitanya, Ertunc Erdil, Neerav Karani, Ender Konukoglu
2020	—	`conf`	Decomposing Image Generation into Layout Prediction and Conditional Synthesis. CVPR Workshops Anna Volokitin, Ender Konukoglu, Luc Van Gool
2020	—	`conf`	Joint Reconstruction and Bias Field Correction for Undersampled MR Imaging. MICCAI (2) Mélanie Gaillochet, Kerem Can Tezcan, Ender Konukoglu
2020	J	`jnl`	Joint reconstruction and bias field correction for undersampled MR imaging. CoRR Mélanie Gaillochet, Kerem Can Tezcan, Ender Konukoglu
2020	—	`conf`	Modelling the Distribution of 3D Brain MRI Using a 2D Slice VAE. MICCAI (7) Anna Volokitin, Ertunc Erdil, Neerav Karani, Kerem Can Tezcan, Xiaoran Chen, Luc Van Gool, Ender Konukoglu
2020	J	`jnl`	Modelling the Distribution of 3D Brain MRI using a 2D Slice VAE. CoRR Anna Volokitin, Ertunc Erdil, Neerav Karani, Kerem Can Tezcan, Xiaoran Chen, Luc Van Gool, Ender Konukoglu
2020	—	`conf`	Probabilistic 3D Surface Reconstruction from Sparse MRI Information. MICCAI (1) Katarína Tóthová, Sarah Parisot, Matthew C. H. Lee, Esther Puyol-Antón, Andrew P. King, Marc Pollefeys, Ender Konukoglu
2020	J	`jnl`	Probabilistic 3D surface reconstruction from sparse MRI information. CoRR Katarína Tóthová, Sarah Parisot, Matthew C. H. Lee, Esther Puyol-Antón, Andrew P. King, Marc Pollefeys, Ender Konukoglu
2020	—	`conf`	RevPHiSeg: A Memory-Efficient Neural Network for Uncertainty Quantification in Medical Image Segmentation. UNSURE/GRAIL@MICCAI Marc Gantenbein, Ertunc Erdil, Ender Konukoglu
2020	J	`jnl`	RevPHiSeg: A Memory-Efficient Neural Network for Uncertainty Quantification in Medical Image Segmentation. CoRR Marc Gantenbein, Ertunc Erdil, Ender Konukoglu
2020	J	`jnl`	Sampling possible reconstructions of undersampled acquisitions in MR imaging. CoRR Kerem Can Tezcan, Christian F. Baumgartner, Ender Konukoglu
2020	J	`jnl`	Semi-supervised Task-driven Data Augmentation for Medical Image Segmentation. CoRR Krishna Chaitanya, Neerav Karani, Christian F. Baumgartner, Anton S. Becker, Olivio Donati, Ender Konukoglu
2020	J	`jnl`	Test-Time Adaptable Neural Networks for Robust Medical Image Segmentation. CoRR Neerav Karani, Krishna Chaitanya, Ender Konukoglu
2020	J	`jnl`	Unsupervised Lesion Detection via Image Restoration with a Normative Prior. CoRR Xiaoran Chen, Suhang You, Kerem Can Tezcan, Ender Konukoglu
2020	J	`jnl`	Unsupervised lesion detection via image restoration with a normative prior. Medical Image Anal. Xiaoran Chen, Suhang You, Kerem Can Tezcan, Ender Konukoglu
2020	J	`jnl`	Unsupervised out-of-distribution detection using kernel density estimation. CoRR Ertunc Erdil, Krishna Chaitanya, Ender Konukoglu
2019	—	`conf`	A Partially Reversible U-Net for Memory-Efficient Volumetric Image Segmentation. MICCAI (3) Robin Brügger, Christian F. Baumgartner, Ender Konukoglu
2019	J	`jnl`	A Partially Reversible U-Net for Memory-Efficient Volumetric Image Segmentation. CoRR Robin Brügger, Christian F. Baumgartner, Ender Konukoglu
2019	J	`jnl`	Adversarial Augmentation for Enhancing Classification of Mammography Images. CoRR Lukás Jendele, Ondrej Skopek, Anton S. Becker, Ender Konukoglu
2019	J	`jnl`	An image interpolation approach for acquisition time reduction in navigator-based 4D MRI. Medical Image Anal. Neerav Karani, Lin Zhang, Christine Tanner, Ender Konukoglu
2019	—	`ed.`	International Conference on Medical Imaging with Deep Learning, MIDL 2019, 8-10 July 2019, London, United Kingdom MIDL M. Jorge Cardoso, Aasa Feragen, Ben Glocker, Ender Konukoglu, Ipek Oguz, Gozde B. Unal, Tom Vercauteren
2019	J	`jnl`	MR Image Reconstruction Using Deep Density Priors. IEEE Trans. Medical Imaging Kerem Can Tezcan, Christian F. Baumgartner, Roger Luechinger, Klaas P. Pruessmann, Ender Konukoglu
2019	J	`jnl`	Machine Learning with Multi-Site Imaging Data: An Empirical Study on the Impact of Scanner Effects. CoRR Ben Glocker, Robert Robinson, Daniel Coelho de Castro, Qi Dou, Ender Konukoglu
2019	J	`jnl`	Medical Imaging with Deep Learning: MIDL 2019 - Extended Abstract Track. CoRR M. Jorge Cardoso, Aasa Feragen, Ben Glocker, Ender Konukoglu, Ipek Oguz, Gozde B. Unal, Tom Vercauteren
2019	J	`jnl`	Morpho-MNIST: Quantitative Assessment and Diagnostics for Representation Learning. J. Mach. Learn. Res. Daniel Coelho de Castro, Jeremy Tan, Bernhard Kainz, Ender Konukoglu, Ben Glocker
2019	—	`conf`	PHiSeg: Capturing Uncertainty in Medical Image Segmentation. MICCAI (2) Christian F. Baumgartner, Kerem Can Tezcan, Krishna Chaitanya, Andreas M. Hötker, Urs J. Muehlematter, Khoschy Schawkat, Anton S. Becker, Olivio Donati, Ender Konukoglu
2019	J	`jnl`	PHiSeg: Capturing Uncertainty in Medical Image Segmentation. CoRR Christian F. Baumgartner, Kerem Can Tezcan, Krishna Chaitanya, Andreas M. Hötker, Urs J. Muehlematter, Khoschy Schawkat, Anton S. Becker, Olivio Donati, Ender Konukoglu
2019	J	`jnl`	Semi-Supervised and Task-Driven Data Augmentation. CoRR Krishna Chaitanya, Neerav Karani, Christian F. Baumgartner, Olivio Donati, Anton S. Becker, Ender Konukoglu
2019	—	`conf`	Semi-supervised and Task-Driven Data Augmentation. IPMI Krishna Chaitanya, Neerav Karani, Christian F. Baumgartner, Anton S. Becker, Olivio Donati, Ender Konukoglu
2019	—	`conf`	Synchrotron X-Ray Phase Contrast Imaging and Deep Neural Networks for Cardiac Collagen Quantification in Hypertensive Rat Model. FIMH Hector Dejea, Christine Tanner, Radhakrishna Achanta, Marco Stampanoni, Fernando Pérez-Cruz, Ender Konukoglu, Anne Bonnin
2019	—	`conf`	Unsupervised Lesion Detection via Image Restoration with a Normative Prior. MIDL Suhang You, Kerem Can Tezcan, Xiaoran Chen, Ender Konukoglu
2019	—	`conf`	Unsupervised Lesion Detection with Locally Gaussian Approximation. MLMI@MICCAI Xiaoran Chen, Nick Pawlowski, Ben Glocker, Ender Konukoglu
2018	—	`conf`	A Lifelong Learning Approach to Brain MR Segmentation Across Scanners and Protocols. MICCAI (1) Neerav Karani, Krishna Chaitanya, Christian F. Baumgartner, Ender Konukoglu
2018	J	`jnl`	A Lifelong Learning Approach to Brain MR Segmentation Across Scanners and Protocols. CoRR Neerav Karani, Krishna Chaitanya, Christian F. Baumgartner, Ender Konukoglu
2018	—	`conf`	Combining Heterogeneously Labeled Datasets For Training Segmentation Networks. MLMI@MICCAI Jana Kemnitz, Christian F. Baumgartner, Wolfgang Wirth, Felix Eckstein, Sebastian K. Eder, Ender Konukoglu
2018	J	`jnl`	Combining Heterogeneously Labeled Datasets For Training Segmentation Networks. CoRR Jana Kemnitz, Christian F. Baumgartner, Wolfgang Wirth, Felix Eckstein, Sebastian K. Eder, Ender Konukoglu
2018	J	`jnl`	Deep EndoVO: A recurrent convolutional neural network (RCNN) based visual odometry approach for endoscopic capsule robots. Neurocomputing Mehmet Turan, Yasin Almalioglu, Helder Araújo, Ender Konukoglu, Metin Sitti
2018	J	`jnl`	Deep Generative Models in the Real-World: An Open Challenge from Medical Imaging. CoRR Xiaoran Chen, Nick Pawlowski, Martin Rajchl, Ben Glocker, Ender Konukoglu
2018	J	`jnl`	Generative Adversarial Networks for MR-CT Deformable Image Registration. CoRR Christine Tanner, Firat Özdemir, Romy Profanter, Valery Vishnevsky, Ender Konukoglu, Orçun Göksel
2018	J	`jnl`	Injecting and removing malignant features in mammography with CycleGAN: Investigation of an automated adversarial attack using neural networks. CoRR Anton S. Becker, Lukás Jendele, Ondrej Skopek, Nicole Berger, Soleen Ghafoor, Magda Marcon, Ender Konukoglu
2018	—	`conf`	Iterative Interaction Training for Segmentation Editing Networks. MLMI@MICCAI Gustav Bredell, Christine Tanner, Ender Konukoglu
2018	J	`jnl`	Iterative Interaction Training for Segmentation Editing Networks. CoRR Gustav Bredell, Christine Tanner, Ender Konukoglu
2018	—	`conf`	Learning to Segment Medical Images with Scribble-Supervision Alone. DLMIA/ML-CDS@MICCAI Yigit Baran Can, Krishna Chaitanya, Basil Mustafa, Lisa M. Koch, Ender Konukoglu, Christian F. Baumgartner
2018	J	`jnl`	Learning to Segment Medical Images with Scribble-Supervision Alone. CoRR Yigit Baran Can, Krishna Chaitanya, Basil Mustafa, Lisa M. Koch, Ender Konukoglu, Christian F. Baumgartner
2018	J	`jnl`	Morpho-MNIST: Quantitative Assessment and Diagnostics for Representation Learning. CoRR Daniel Coelho de Castro, Jeremy Tan, Bernhard Kainz, Ender Konukoglu, Ben Glocker
2018	J	`jnl`	Reconstructing subject-specific effect maps. NeuroImage Ender Konukoglu, Ben Glocker
2018	J	`jnl`	Reducing Navigators in Free-Breathing Abdominal MRI via Temporal Interpolation Using Convolutional Neural Networks. IEEE Trans. Medical Imaging Neerav Karani, Christine Tanner, Sebastian Kozerke, Ender Konukoglu
2018	J	`jnl`	Sparse-then-dense alignment-based 3D map reconstruction method for endoscopic capsule robots. Mach. Vis. Appl. Mehmet Turan, Yusuf Yigit Pilavci, Ipek Ganiyusufoglu, Helder Araújo, Ender Konukoglu, Metin Sitti
2018	J	`jnl`	Temporal Interpolation via Motion Field Prediction. CoRR Lin Zhang, Neerav Karani, Christine Tanner, Ender Konukoglu
2018	—	`conf`	Uncertainty Quantification in CNN-Based Surface Prediction Using Shape Priors. ShapeMI@MICCAI Katarína Tóthová, Sarah Parisot, Matthew C. H. Lee, Esther Puyol-Antón, Lisa M. Koch, Andrew P. King, Ender Konukoglu, Marc Pollefeys
2018	J	`jnl`	Uncertainty Quantification in CNN-Based Surface Prediction Using Shape Priors. CoRR Katarína Tóthová, Sarah Parisot, Matthew C. H. Lee, Esther Puyol-Antón, Lisa M. Koch, Andrew P. King, Ender Konukoglu, Marc Pollefeys
2018	J	`jnl`	Unsupervised Detection of Lesions in Brain MRI using constrained adversarial auto-encoders. CoRR Xiaoran Chen, Ender Konukoglu
2018	A*	`conf`	Visual Feature Attribution Using Wasserstein GANs. CVPR Christian F. Baumgartner, Lisa M. Koch, Kerem Can Tezcan, Jia Xi Ang, Ender Konukoglu
2018	J	`jnl`	as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. NeuroImage Hui Wang, Caroline Magnain, Ruopeng Wang, Jay Dubb, Ani Varjabedian, Lee S. Tirrell, Allison Stevens, Jean C. Augustinack, Ender Konukoglu, Iman Aganj, Matthew P. Frosch, Jeremy D. Schmahmann, Bruce Fischl, David A. Boas
2018	J	`jnl`	eCurves: A Temporal Shape Encoding. IEEE Trans. Biomed. Eng. Elena Bernardis, Yong Zhang, Ender Konukoglu, Yangming Ou, Harold S. Javitz, Leon Axel, Dimitris N. Metaxas, Benoit Desjardins, Kilian M. Pohl
2017	J	`jnl`	A Deep Learning Based 6 Degree-of-Freedom Localization Method for Endoscopic Capsule Robots. CoRR Mehmet Turan, Yasin Almalioglu, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	A Non-Rigid Map Fusion-Based RGB-Depth SLAM Method for Endoscopic Capsule Robots. CoRR Mehmet Turan, Yasin Almalioglu, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	A deep learning based fusion of RGB camera information and magnetic localization information for endoscopic capsule robots. Int. J. Intell. Robotics Appl. Mehmet Turan, Jahanzaib Shabbir, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	A fully dense and globally consistent 3D map reconstruction approach for GI tract to enhance therapeutic relevance of the endoscopic capsule robot. CoRR Mehmet Turan, Yusuf Yigit Pilavci, Redhwan Jamiruddin, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	A non-rigid map fusion-based direct SLAM method for endoscopic capsule robots. Int. J. Intell. Robotics Appl. Mehmet Turan, Yasin Almalioglu, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	—	`conf`	An Exploration of 2D and 3D Deep Learning Techniques for Cardiac MR Image Segmentation. STACOM@MICCAI Christian F. Baumgartner, Lisa M. Koch, Marc Pollefeys, Ender Konukoglu
2017	J	`jnl`	An Exploration of 2D and 3D Deep Learning Techniques for Cardiac MR Image Segmentation. CoRR Christian F. Baumgartner, Lisa M. Koch, Marc Pollefeys, Ender Konukoglu
2017	J	`jnl`	Deep EndoVO: A Recurrent Convolutional Neural Network (RCNN) based Visual Odometry Approach for Endoscopic Capsule Robots. CoRR Mehmet Turan, Yasin Almalioglu, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	MR image reconstruction using the learned data distribution as prior. CoRR Kerem Can Tezcan, Christian F. Baumgartner, Ender Konukoglu
2017	—	`conf`	Permutation tests for classification: revisited. PRNI Melanie Ganz, Ender Konukoglu
2017	J	`jnl`	Six Degree-of-Freedom Localization of Endoscopic Capsule Robots using Recurrent Neural Networks embedded into a Convolutional Neural Network. CoRR Mehmet Turan, Abdullah Abdullah, Redhwan Jamiruddin, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	Sparse-then-Dense Alignment based 3D Map Reconstruction Method for Endoscopic Capsule Robots. CoRR Mehmet Turan, Yusuf Yigit Pilavci, Ipek Ganiyusufoglu, Helder Araújo, Ender Konukoglu, Metin Sitti
2017	J	`jnl`	SubCMap: Subject and Condition Specific Effect Maps. CoRR Ender Konukoglu, Ben Glocker
2017	—	`conf`	Temporal Interpolation of Abdominal MRIs Acquired During Free-Breathing. MICCAI (2) Neerav Karani, Christine Tanner, Sebastian Kozerke, Ender Konukoglu
2017	J	`jnl`	Visual Feature Attribution using Wasserstein GANs. CoRR Christian F. Baumgartner, Lisa M. Koch, Kerem Can Tezcan, Jia Xi Ang, Ender Konukoglu
2016	—	`conf`	Constructing Subject- and Disease-Specific Effect Maps: Application to Neurodegenerative Diseases. MCV/BAMBI@MICCAI Ender Konukoglu, Ben Glocker
2016	—	`conf`	Correction of Fat-Water Swaps in Dixon MRI. MICCAI (3) Ben Glocker, Ender Konukoglu, Ioannis Lavdas, Juan Eugenio Iglesias, Eric O. Aboagye, Andrea G. Rockall, Daniel Rueckert
2016	J	`jnl`	Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. NeuroImage Ender Konukoglu, Jean-Philippe Coutu, David H. Salat, Bruce Fischl
2015	J	`jnl`	Clinical Prediction from Structural Brain MRI Scans: A Large-Scale Empirical Study. Neuroinformatics Mert R. Sabuncu, Ender Konukoglu
2015	J	`jnl`	Relevant feature set estimation with a knock-out strategy and random forests. NeuroImage Melanie Ganz, Douglas N. Greve, Bruce Fischl, Ender Konukoglu
2015	J	`jnl`	The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans. Medical Imaging Bjoern H. Menze, András Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin S. Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth R. Gerstner, Marc-André Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Herve Delingette, Çagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, José Antonio Mariz, Raphael Meier, Sérgio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael T. Ryan, Duygu Sarikaya, Lawrence H. Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno J. Sousa, Nagesh K. Subbanna, Gábor Székely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gözde B. Ünal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
2014	J	`jnl`	Approximate False Positive Rate Control in Selection Frequency for Random Forest. CoRR Ender Konukoglu, Melanie Ganz
2013	—	`conf`	Example-Based Restoration of High-Resolution Magnetic Resonance Image Acquisitions. MICCAI (1) Ender Konukoglu, André J. W. van der Kouwe, Mert Rory Sabuncu, Bruce Fischl
2013	—	`conf`	Is Synthesizing MRI Contrast Useful for Inter-modality Analysis? MICCAI (1) Juan Eugenio Iglesias, Ender Konukoglu, Darko Zikic, Ben Glocker, Koen Van Leemput, Bruce Fischl
2013	—	`conf`	Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization. MICCAI (1) Dong Hye Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, Ender Konukoglu
2013	J	`jnl`	Neighbourhood approximation using randomized forests. Medical Image Anal. Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
2013	—	`conf`	On Feature Relevance in Image-Based Prediction Models: An Empirical Study. MLMI Ender Konukoglu, Melanie Ganz, Koen Van Leemput, Mert R. Sabuncu
2013	J	`jnl`	Regression forests for efficient anatomy detection and localization in computed tomography scans. Medical Image Anal. Antonio Criminisi, Duncan P. Robertson, Ender Konukoglu, Jamie Shotton, Sayan D. Pathak, Steve White, Khan M. Siddiqui
2013	—	`conf`	Use of Diffusion Tensor Images in Glioma Growth Modeling for Radiotherapy Target Delineation. MBIA Florian Dittmann, Bjoern H. Menze, Ender Konukoglu, Jan Unkelbach
2013	—	`conf`	Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations. MICCAI (2) Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi
2013	J	`jnl`	WESD-Weighted Spectral Distance for Measuring Shape Dissimilarity. IEEE Trans. Pattern Anal. Mach. Intell. Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl
2012	—	`conf`	Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans. MICCAI (3) Ben Glocker, Johannes Feulner, Antonio Criminisi, David R. Haynor, Ender Konukoglu
2012	—	`conf`	Decision Forests for Tissue-Specific Segmentation of High-Grade Gliomas in Multi-channel MR. MICCAI (3) Darko Zikic, Ben Glocker, Ender Konukoglu, Antonio Criminisi, Çagatay Demiralp, Jamie Shotton, Owen M. Thomas, Tilak Das, Raj Jena, Stephen J. Price
2012	J	`jnl`	Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning. Found. Trends Comput. Graph. Vis. Antonio Criminisi, Jamie Shotton, Ender Konukoglu
2012	J	`jnl`	Discriminative Segmentation-Based Evaluation Through Shape Dissimilarity. IEEE Trans. Medical Imaging Ender Konukoglu, Ben Glocker, Dong Hye Ye, Antonio Criminisi, Kilian M. Pohl
2012	—	`conf`	Joint Classification-Regression Forests for Spatially Structured Multi-object Segmentation. ECCV (4) Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi
2012	—	`conf`	Neighbourhood Approximation Forests. MICCAI (3) Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi
2012	—	`ed.`	Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges - Second International Workshop, STACOM 2011, Held in Conjunction with MICCAI 2011, Toronto, ON, Canada, September 22, 2011, Revised Selected Papers STACOM Oscar Camara, Ender Konukoglu, Mihaela Pop, Kawal S. Rhode, Maxime Sermesant, Alistair A. Young
2012	—	`conf`	Temporal Shape Analysis via the Spectral Signature. MICCAI (2) Elena Bernardis, Ender Konukoglu, Yangming Ou, Dimitris N. Metaxas, Benoit Desjardins, Kilian M. Pohl
2012	J	`jnl`	WESD - Weighted Spectral Distance for Measuring Shape Dissimilarity CoRR Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl
2011	—	`conf`	A Generative Approach for Image-Based Modeling of Tumor Growth. IPMI Bjoern H. Menze, Koen Van Leemput, Antti Honkela, Ender Konukoglu, Marc-André Weber, Nicholas Ayache, Polina Golland
2011	J	`jnl`	A multi-front eikonal model of cardiac electrophysiology for interactive simulation of radio-frequency ablation. Comput. Graph. Erik Pernod, Maxime Sermesant, Ender Konukoglu, Jatin Relan, Herve Delingette, Nicholas Ayache
2011	—	`conf`	Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active Learning. IPMI Juan Eugenio Iglesias, Ender Konukoglu, Albert Montillo, Zhuowen Tu, Antonio Criminisi
2011	B	`conf`	Robust linear registration of CT images using random regression forests. Image Processing Ender Konukoglu, Antonio Criminisi, Sayan D. Pathak, Duncan P. Robertson, Steve White, David R. Haynor, Khan M. Siddiqui
2011	J	`jnl`	Spatial decision forests for MS lesion segmentation in multi-channel magnetic resonance images. NeuroImage Ezequiel Geremia, Olivier Clatz, Bjoern H. Menze, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache
2010	J	`jnl`	Extrapolating glioma invasion margin in brain magnetic resonance images: Suggesting new irradiation margins. Medical Image Anal. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Nicholas Ayache
2010	J	`jnl`	Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Trans. Medical Imaging Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Bram Stieltjes, Marc-André Weber, Emmanuel Mandonnet, Herve Delingette, Nicholas Ayache
2010	—	`conf`	Regression Forests for Efficient Anatomy Detection and Localization in CT Studies. MCV Antonio Criminisi, Jamie Shotton, Duncan P. Robertson, Ender Konukoglu
2010	—	`conf`	Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images. MICCAI (1) Ezequiel Geremia, Bjoern H. Menze, Olivier Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache
2009	—	`—`	Modeling Glioma Growth and Personalizing Growth Models in Medical Images. (Modélisation de la croissance des gliomes et personnalisation des modéles de croissance à l'aide d'images médicales). Ender Konukoglu
2008	—	`conf`	Monitoring slowly evolving tumors. ISBI Ender Konukoglu, William M. Wells III, Sébastien Novellas, Nicholas Ayache, Ron Kikinis, Peter M. Black, Kilian M. Pohl
2007	—	`conf`	A Recursive Anisotropic Fast Marching Approach to Reaction Diffusion Equation: Application to Tumor Growth Modeling. IPMI Ender Konukoglu, Maxime Sermesant, Olivier Clatz, Jean-Marc Peyrat, Hervé Delingette, Nicholas Ayache
2007	—	`conf`	An Anisotropic Multi-front Fast Marching Method for Real-Time Simulation of Cardiac Electrophysiology. FIMH Maxime Sermesant, Ender Konukoglu, Hervé Delingette, Yves Coudière, Phani Chinchapatnam, Kawal S. Rhode, Reza Razavi, Nicholas Ayache
2007	J	`jnl`	Computational Brain Tumours. ERCIM News Olivier Clatz, Ender Konukoglu, Pierre-Yves Bondiau, Simon K. Warfield, Hervé Delingette, Nicholas Ayache
2007	J	`jnl`	HDF: Heat diffusion fields for polyp detection in CT colonography. Signal Process. Ender Konukoglu, Burak Acar
2007	J	`jnl`	Polyp Enhancing Level Set Evolution of Colon Wall: Method and Pilot Study. IEEE Trans. Medical Imaging Ender Konukoglu, Burak Acar, David S. Paik, Christopher F. Beaulieu, Jarrett Rosenberg, Sandy Napel
2007	—	`conf`	Towards an Identification of Tumor Growth Parameters from Time Series of Images. MICCAI (1) Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Maxime Sermesant, Hervé Delingette, Nicholas Ayache
2006	—	`conf`	Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions. MICCAI (1) Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Nicholas Ayache
2006	J	`jnl`	Shape-Based Hand Recognition. IEEE Trans. Image Process. Erdem Yörük, Ender Konukoglu, Bülent Sankur, Jérôme Darbon
2005	—	`conf`	Heat diffusion based detection of colonic polyps in CT colonography. EUSIPCO Ender Konukoglu, Burak Acar, David S. Paik, Christopher F. Beaulieu, Sandy Napel
2004	—	`conf`	Person authentication based on hand shape. EUSIPCO Erdem Yörük, Ender Konukoglu, Bülent Sankur, Jérôme Darbon