Emre Sefer

41 papers A* 4A 1B 3C 3Journal 21Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
Diagnosing LLM Reranker Behavior Under Fixed Evidence Pools.
CoRR
Baris Arat, Emre Sefer
2026 J jnl
GAT-HiC: Efficient Reconstruction of 3D Chromosome Structure via Residual Graph Attention Neural Networks.
IEEE Trans. Comput. Biol. Bioinform.
Beyza Kaya, Emre Sefer
2026 J jnl
Sub-City Real Estate Price Index Forecasting at Weekly Horizons Using Satellite Radar and News Sentiment.
CoRR
Baris Arat, Hasan Fehmi Ates, Emre Sefer
2025 A conf
Anomaly Detection via Graph Contrastive Learning.
SDM
Emre Sefer
2025 J jnl
DRGAT: Predicting Drug Responses Via Diffusion-Based Graph Attention Network.
J. Comput. Biol.
Emre Sefer
2025 J jnl
FinSentiment: Predicting Financial Sentiment Through Transfer Learning.
Intell. Syst. Account. Finance Manag.
Zehra Erva Ergun, Emre Sefer
2025 J jnl
Financial Statement Fraud Detection via Large Language Models.
Intell. Syst. Account. Finance Manag.
Zehra Erva Ergun, Emre Sefer
2025 — conf
Financial Statement Fraud Detection with a Categorical-to-Numerical Data Representation.
ICAIF
Tuna Alaygut, Emre Sefer
2025 J jnl
Financial asset price prediction with graph neural network-based temporal deep learning models.
Neural Comput. Appl.
Yasin Uygun, Emre Sefer
2025 — conf
Hypergraph Neural Networks to Predict Stock Movements By Exploring Higher-order Relationships.
ICAIF
Tuna Alaygut, Emre Sefer
2025 J jnl
PageRank-Based Unsupervised Deep Vertex Representations for Anti-Money Laundering Detection.
IEEE Access
Abdul Haluk Batur Gezici, Emre Sefer
2025 J jnl
The significance of chromosome conformation capture in 3D genome architecture comprehension.
Comput. Biol. Chem.
Selinay Cetin, Emre Sefer
2024 J jnl
Correction: Hi-C interaction graph analysis reveals the impact of histone modifications in chromatin shape.
Appl. Netw. Sci.
Emre Sefer
2024 J jnl
Deep Transformer-Based Asset Price and Direction Prediction.
IEEE Access
Abdul Haluk Batur Gezici, Emre Sefer
2023 J jnl
BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT.
IEEE ACM Trans. Comput. Biol. Bioinform.
Necla Nisa Soylu, Emre Sefer
2023 — conf
NFT Primary Sale Price and Secondary Sale Prediction via Deep Learning.
ICAIF
Betul Seyhan, Emre Sefer
2023 — conf
Optimal Reconstruction of Graph Evolution Dynamics for Duplication-Based Models.
COMPLEX NETWORKS (2)
Emre Sefer, Samuel Gilmour
2023 — conf
SGD with Partial Hessian for Deep Recommendation System Optimization.
ICDM (Workshops)
Gorkem Yencak, Emre Sefer
2022 — conf
A Novel GBT-Based Approach for Cross-Channel Fraud Detection on Real-World Banking Transactions.
AIAI (1)
Ugur Dolu, Emre Sefer
2022 J jnl
A comparison of topologically associating domain callers over mammals at high resolution.
BMC Bioinform.
Emre Sefer
2022 — conf
Asset Price and Direction Prediction via Deep 2D Transformer and Convolutional Neural Networks.
ICAIF
Tuna Tuncer, Uygar Kaya, Emre Sefer, Onur Alacam, Tugcan Hoser
2022 J jnl
BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Emre Sefer
2022 J jnl
MOCMIN: convex inferring of modular low-rank contact networks over COVID diffusion data.
Turkish J. Electr. Eng. Comput. Sci.
Emre Sefer
2021 J jnl
Hi-C interaction graph analysis reveals the impact of histone modifications in chromatin shape.
Appl. Netw. Sci.
Emre Sefer
2020 — conf
Joint Modeling of Histone Modifications in 3D Genome Shape Through Hi-C Interaction Graph.
COMPLEX NETWORKS (2)
Emre Sefer
2019 J jnl
Semi-nonparametric modeling of topological domain formation from epigenetic data.
Algorithms Mol. Biol.
Emre Sefer, Carl Kingsford
2016 J jnl
Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations.
J. Comput. Biol.
Emre Sefer, Geet Duggal, Carl Kingsford
2016 J jnl
Diffusion archeology for diffusion progression history reconstruction.
Knowl. Inf. Syst.
Emre Sefer, Carl Kingsford
2016 B conf
Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments.
RECOMB
Emre Sefer, Ziv Bar-Joseph
2015 A* conf
Convex Risk Minimization to Infer Networks from probabilistic diffusion data at multiple scales.
ICDE
Emre Sefer, Carl Kingsford
2015 B conf
Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations.
RECOMB
Emre Sefer, Geet Duggal, Carl Kingsford
2015 C conf
Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data.
WABI
Emre Sefer, Carl Kingsford
2014 A* conf
Diffusion Archaeology for Diffusion Progression History Reconstruction.
ICDM
Emre Sefer, Carl Kingsford
2013 J jnl
Resolving spatial inconsistencies in chromosome conformation measurements.
Algorithms Mol. Biol.
Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford
2012 J jnl
Parsimonious reconstruction of network evolution.
Algorithms Mol. Biol.
Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford
2012 C conf
Resolving Spatial Inconsistencies in Chromosome Conformation Data.
WABI
Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford
2012 A* conf
The missing models: a data-driven approach for learning how networks grow.
KDD
Rob Patro, Geet Duggal, Emre Sefer, Hao Wang, Darya Filippova, Carl Kingsford
2011 B conf
Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction.
RECOMB
Emre Sefer, Carl Kingsford
2011 — conf
NetVisia: Heat Map & Matrix Visualization of Dynamic Social Network Statistics & Content.
SocialCom/PASSAT
Robert Gove, Nick Gramsky, Rose Kirby, Emre Sefer, Awalin Sopan, Cody Dunne, Ben Shneiderman, Meirav Taieb-Maimon
2011 C conf
Parsimonious Reconstruction of Network Evolution.
WABI
Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford
2009 A* conf
Thinking Ahead in Real-Time Search.
ICAPS
Dana S. Nau, Ugur Kuter, Emre Sefer