Emmanuel Noutahi

20 papers A* 1B 1Journal 17Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Elucidating the Design Space of Flow Matching for Cellular Microscopy.
CoRR
Charles Jones, Emmanuel Noutahi, Jason S. Hartford, Cian Eastwood
2025 A* conf
A Cross Modal Knowledge Distillation & Data Augmentation Recipe for Improving Transcriptomics Representations through Morphological Features.
ICML
Ihab Bendidi, Yassir El Mesbahi, Alisandra Kaye Denton, Karush Suri, Kian Kenyon-Dean, Auguste Genovesio, Emmanuel Noutahi
2025 J jnl
A Cross Modal Knowledge Distillation & Data Augmentation Recipe for Improving Transcriptomics Representations through Morphological Features.
CoRR
Ihab Bendidi, Yassir El Mesbahi, Alisandra Kaye Denton, Karush Suri, Kian Kenyon-Dean, Auguste Genovesio, Emmanuel Noutahi
2025 J jnl
Conditional Chemical Language Models are Versatile Tools in Drug Discovery.
CoRR
Lu Zhu, Emmanuel Noutahi
2025 J jnl
Graph and Simplicial Complex Prediction Gaussian Process via the Hodgelet Representations.
CoRR
Mathieu Alain, So Takao, Xiaowen Dong, Bastian Rieck, Emmanuel Noutahi
2025 J jnl
TxPert: Leveraging Biochemical Relationships for Out-of-Distribution Transcriptomic Perturbation Prediction.
CoRR
Frederik Wenkel, Wilson Tu, Cassandra Masschelein, Hamed Shirzad, Cian Eastwood, Shawn Whitfield, Ihab Bendidi, Craig Russell, Liam Hodgson, Yassir El Mesbahi, Jiarui Ding, Marta M. Fay, Berton Earnshaw, Emmanuel Noutahi, Alisandra Kaye Denton
2025 J jnl
Virtual Cells: Predict, Explain, Discover.
CoRR
Emmanuel Noutahi, Jason S. Hartford, Prudencio Tossou, Shawn Whitfield, Alisandra Kaye Denton, Cas Wognum, Kristina Ulicna, Michael Craig, Jonathan Hsu, Michael Cuccarese, Emmanuel Bengio, Dominique Beaini, Christopher Gibson, Daniel Cohen, Berton Earnshaw
2024 J jnl
Benchmarking Transcriptomics Foundation Models for Perturbation Analysis : one PCA still rules them all.
CoRR
Ihab Bendidi, Shawn Whitfield, Kian Kenyon-Dean, Hanene Ben Yedder, Yassir El Mesbahi, Emmanuel Noutahi, Alisandra Kaye Denton
2024 J jnl
Graph Classification Gaussian Processes via Hodgelet Spectral Features.
CoRR
Mathieu Alain, So Takao, Xiaowen Dong, Bastian Rieck, Emmanuel Noutahi
2024 J jnl
Real-World Molecular Out-Of-Distribution: Specification and Investigation.
J. Chem. Inf. Model.
Prudencio Tossou, Cas Wognum, Michael Craig, Hadrien Mary, Emmanuel Noutahi
2024 J jnl
SAFE setup for generative molecular design.
CoRR
Yassir El Mesbahi, Emmanuel Noutahi
2023 J jnl
Gotta be SAFE: A New Framework for Molecular Design.
CoRR
Emmanuel Noutahi, Cristian Gabellini, Michael Craig, Jonathan S. C. Lim, Prudencio Tossou
2023 J jnl
Role of Structural and Conformational Diversity for Machine Learning Potentials.
CoRR
Nikhil Shenoy, Prudencio Tossou, Emmanuel Noutahi, Hadrien Mary, Dominique Beaini, Jiarui Ding
2020 J jnl
Evolution through segmental duplications and losses: a Super-Reconciliation approach.
Algorithms Mol. Biol.
Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos
2020 J jnl
Molecular Design in Synthetically Accessible Chemical Space via Deep Reinforcement Learning.
CoRR
Julien Horwood, Emmanuel Noutahi
2019 J jnl
Towards Interpretable Sparse Graph Representation Learning with Laplacian Pooling.
CoRR
Emmanuel Noutahi, Dominique Beaini, Julien Horwood, Prudencio Tossou
2018 J jnl
GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution.
BMC Genom.
Emmanuel Noutahi, Nadia El-Mabrouk
2018 — conf
Reconstructing the History of Syntenies Through Super-Reconciliation.
RECOMB-CG
Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos
2017 J jnl
CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.
Bioinform.
Emmanuel Noutahi, Virginie Calderon, Mathieu Blanchette, B. Franz Lang, Nadia El-Mabrouk
2016 B conf
Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation Cost.
CPM
Manuel Lafond, Emmanuel Noutahi, Nadia El-Mabrouk