Emilie Pasche - RankMe

47 papers Misc 1Journal 13Unranked 33

Year	Rank	Type	Title / Venue / Authors
2024	—	`conf`	Comparing Sequence-Based and Literature-Based Pathogenicity Scoring Methods for Human Variants. MIE Luc Mottin, Nona Naderi, Anaïs Mottaz, Pierre-André Michel, Lennart F. Johansson, Morris A. Swertz, Andrew Stubbs, Emilie Pasche, Julien Gobeill, Patrick Ruch
2023	J	`jnl`	Assessing the use of supplementary materials to improve genomic variant discovery. Database J. Biol. Databases Curation Emilie Pasche, Anaïs Mottaz, Julien Gobeill, Pierre-André Michel, Déborah Caucheteur, Nona Naderi, Patrick Ruch
2022	—	`conf`	Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service. MIE Anaïs Mottaz, Emilie Pasche, Pierre-André Michel, Luc Mottin, Douglas Teodoro, Patrick Ruch
2022	J	`jnl`	Variomes: a high recall search engine to support the curation of genomic variants. Bioinform. Emilie Pasche, Anaïs Mottaz, Déborah Caucheteur, Julien Gobeill, Pierre-André Michel, Patrick Ruch
2021	—	`conf`	SIB Text Mining at TREC Clinical Trials 2021. TREC Déborah Caucheteur, Emilie Pasche, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch
2020	J	`jnl`	DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
2020	J	`jnl`	SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. Nucleic Acids Res. Julien Gobeill, Déborah Caucheteur, Pierre-André Michel, Luc Mottin, Emilie Pasche, Patrick Ruch
2020	—	`conf`	SIB Text Mining at TREC Precision Medicine 2020. TREC Emilie Pasche, Déborah Caucheteur, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch
2020	—	`conf`	Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology. MIE Déborah Caucheteur, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Pierre-André Michel, Luc Mottin, Daniel J. Stekhoven, Valérie Barbié, Patrick Ruch
2020	J	`jnl`	UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database J. Biol. Databases Curation Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch
2019	—	`conf`	A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. CLEF (Working Notes) Nona Naderi, Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch
2019	—	`conf`	Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine. TREC Déborah Caucheteur, Emilie Pasche, Julien Gobeill, Anaïs Mottaz, Luc Mottin, Patrick Ruch
2019	—	`conf`	Retrieving the Evidence of a Free Text Annotation in a Scientific Article: A Data Free Approach. CICLing (1) Julien Gobeill, Emilie Pasche, Patrick Ruch
2018	J	`jnl`	Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database J. Biol. Databases Curation Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Daniel Dinis Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
2017	—	`conf`	Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC Emilie Pasche, Julien Gobeill, Luc Mottin, Anaïs Mottaz, Douglas Teodoro, Paul Van Rijen, Patrick Ruch
2017	J	`jnl`	Triage by ranking to support the curation of protein interactions. Database J. Biol. Databases Curation Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch
2016	—	`conf`	BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. CLEF (Working Notes) Luc Mottin, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Arnaud Gaudinat, Patrick Ruch
2016	J	`jnl`	neXtA Database J. Biol. Databases Curation Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
2015	J	`jnl`	Deep Question Answering for protein annotation. Database J. Biol. Databases Curation Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch
2014	J	`jnl`	Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database J. Biol. Databases Curation Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
2014	—	`conf`	DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance. SWAT4LS Daniel Schober, Rémy Choquet, Kristof Depraetere, Frank Enders, Philipp Daumke, Marie-Christine Jaulent, Douglas Teodoro, Emilie Pasche, Christian Lovis, Martin Boeker
2014	J	`jnl`	Development and tuning of an original search engine for patent libraries in medicinal chemistry. BMC Bioinform. Emilie Pasche, Julien Gobeill, Olivier Kreim, Fatma Oezdemir-Zaech, Thérèse Vachon, Christian Lovis, Patrick Ruch
2014	—	`conf`	Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track. TREC Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Patrick Ruch
2013	J	`jnl`	Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database J. Biol. Databases Curation Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
2013	—	`conf`	Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks. MedInfo Emilie Pasche, Julien Gobeill, Dina Vishnyakova, Patrick Ruch, Christian Lovis
2013	—	`conf`	Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature. EFMI-STC Dina Vishnyakova, Emilie Pasche, Christian Lovis, Patrick Ruch
2012	—	`conf`	A User-Friendly Tool for Medical-Related Patent Retrieval. EFMI-STC Emilie Pasche, Julien Gobeill, Douglas Teodoro, Arnaud Gaudinat, Dina Vishnyakova, Christian Lovis, Patrick Ruch
2012	—	`conf`	An advanced search engine for patent analytics in medicinal chemistry. MIE Emilie Pasche, Julien Gobeill, Douglas Teodoro, Arnaud Gaudinat, Dina Vishnyakova, Christian Lovis, Patrick Ruch
2012	—	`conf`	Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database. MIE Dina Vishnyakova, Emilie Pasche, Julien Gobeill, Arnaud Gaudinat, Christian Lovis, Patrick Ruch
2012	—	`conf`	Pathogens and Gene Product Normalization in the Biomedical Literature. EFMI-STC Dina Vishnyakova, Emilie Pasche, Douglas Teodoro, Christian Lovis, Patrick Ruch
2012	J	`jnl`	Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation Dina Vishnyakova, Emilie Pasche, Patrick Ruch
2011	—	`conf`	BiTeM Group Report for TREC Chemical IR Track 2011. TREC Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
2011	—	`conf`	BiTeM Group Report for TREC Medical Records Track 2011. TREC Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
2011	—	`conf`	Interoperability Driven Integration of Biomedical Data Sources. MIE Douglas Teodoro, Rémy Choquet, Daniel Schober, Giovanni Mels, Emilie Pasche, Patrick Ruch, Christian Lovis
2011	—	`conf`	Using Multimodal Mining to Drive Clinical Guidelines Development. MIE Emilie Pasche, Julien Gobeill, Douglas Teodoro, Dina Vishnyakova, Arnaud Gaudinat, Patrick Ruch, Christian Lovis
2010	—	`conf`	Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining. NTCIR Douglas Teodoro, Emilie Pasche, Dina Vishnyakova, Julien Gobeill, Patrick Ruch, Christian Lovis
2010	—	`conf`	Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10. CLEF (Notebook Papers/LABs/Workshops) Douglas Teodoro, Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch, Christian Lovis
2010	—	`conf`	BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval. TREC Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
2010	—	`conf`	Partage de Données Biomédicales sur le Web Sémantique. WSM@IC Rémy Choquet, Douglas Teodoro, Giovanni Mels, Ariane Assélé Kama, Emilie Pasche, Patrick Ruch, Christian Lovis, Marie-Christine Jaulent
2010	—	`conf`	The Information Quality Triangle: A methodology to assess Clinical Information quality. MedInfo Rémy Choquet, Samiha Qouiyd, David Ouagne, Emilie Pasche, Christel Daniel, Omar Boussaïd, Marie-Christine Jaulent
2010	—	`conf`	Un modèle de connaissances pour mesurer la qualité d'une source d'information. IC Rémy Choquet, Samiha Qouiyd, Emilie Pasche, Christel Daniel, Omar Boussaïd, Marie-Christine Jaulent
2009	—	`conf`	Automatic Medical Knowledge Acquisition Using Question-Answering. MIE Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis
2009	—	`conf`	Biomedical Data Management: A Proposal Framework. MIE Douglas Teodoro, Rémy Choquet, Emilie Pasche, Julien Gobeill, Christel Daniel, Patrick Ruch, Christian Lovis
2009	Misc	`conf`	QA-driven Guidelines Generation for Bacteriotherapy. AMIA Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis
2009	—	`conf`	Report on the TREC 2009 Experiments: Chemical IR Track. TREC Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch
2009	—	`conf`	Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009. CLEF (1) Julien Gobeill, Emilie Pasche, Douglas Teodoro, Patrick Ruch
2009	—	`conf`	Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009. CLEF (Working Notes) Julien Gobeill, Douglas Theodoro, Emilie Pasche, Patrick Ruch