Ellis Patrick

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
SpatioMark: quantifying the impact of spatial proximity on cell phenotype.
Bioinform.
Sourish S. Iyengar, Alex R. Qin, Nicholas Robertson, Andrew N. Harman, Ellis Patrick
2023 J jnl
Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables.
Comput. Biol. Medicine
Xiaohang Fu, Ellis Patrick, Jean Y. H. Yang, David Dagan Feng, Jinman Kim
2022 J jnl
Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine.
npj Digit. Medicine
Kevin Y. X. Wang, Gulietta M. Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F. Thompson, Richard A. Scolyer, Samuel Müller, Garth Tarr, Graham J. Mann, Jean Yee Hwa Yang
2022 J jnl
scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction.
Bioinform.
Yue Cao, Yingxin Lin, Ellis Patrick, Pengyi Yang, Jean Yee Hwa Yang
2022 J jnl
spicyR: spatial analysis of
Bioinform.
Nicolas P. Canete, Sourish S. Iyengar, John T. Ormerod, Heeva Baharlou, Andrew N. Harman, Ellis Patrick
2021 J jnl
AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images.
Bioinform.
Heeva Baharlou, Nicolas P. Canete, Kirstie M. Bertram, Kerrie J. Sandgren, Anthony Cunningham, Andrew N. Harman, Ellis Patrick
2020 J jnl
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression.
PLoS Comput. Biol.
Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
2019 J jnl
DCARS: differential correlation across ranked samples.
Bioinform.
Shila Ghazanfar, Dario Strbenac, John T. Ormerod, Jean Yee Hwa Yang, Ellis Patrick
2015 J jnl
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.
Bioinform.
Ellis Patrick, Michael J. Buckley, Samuel Müller, David M. Lin, Jean Yee Hwa Yang
2014 J jnl
Detection of Multiple Outbreaks Using Spatio-Temporal EWMA-Ordered Statistics.
Commun. Stat. Simul. Comput.
Ross Sparks, Ellis Patrick
2014 J jnl
Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway.
Bioinform.
Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J. Fazakerley, James G. Burchfield, Christopher Gribben, Matthew J. Prior, David E. James, Yee Hwa Yang
2013 J jnl
Estimation of data-specific constitutive exons with RNA-Seq data.
BMC Bioinform.
Ellis Patrick, Michael J. Buckley, Yee Hwa Yang
2013 J jnl
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.
BMC Genom.
Ellis Patrick, Michael J. Buckley, David M. Lin, Yee Hwa Yang