Elisa Ficarra - RankMe

113 papers A* 3A 4B 6C 3Misc 2Journal 48Unranked 45

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Handling Missing Modalities in Multimodal Survival Prediction for Non-Small Cell Lung Cancer. CoRR Filippo Ruffini, Camillo Maria Caruso, Claudia Tacconi, Lorenzo Nibid, Francesca Miccolis, Marta Lovino, Carlo Greco, Edy Ippolito, Michele Fiore, Alessio Cortellini, Bruno Beomonte Zobel, Giuseppe Perrone, Bruno Vincenzi, Claudio Marrocco, Alessandro Bria, Elisa Ficarra, Sara Ramella, Valerio Guarrasi, Paolo Soda
2025	—	`conf`	Accurate 3D Medical Image Segmentation with Mambas. ISBI Luca Lumetti, Vittorio Pipoli, Kevin Marchesini, Elisa Ficarra, Costantino Grana, Federico Bolelli
2025	B	`conf`	CUBIC: Concept Embeddings for Unsupervised Bias Identification using VLMs. IJCNN David Méndez, Gianpaolo Bontempo, Elisa Ficarra, Roberto Confalonieri, Natalia Díaz Rodríguez
2025	J	`jnl`	CUBIC: Concept Embeddings for Unsupervised Bias Identification using VLMs. CoRR David Méndez, Gianpaolo Bontempo, Elisa Ficarra, Roberto Confalonieri, Natalia Díaz Rodríguez
2025	B	`conf`	Foundation Models for Hepatocellular Carcinoma: Challenges in Generalization under Data Scarcity. IJCNN Giulia Corso, Marta Lovino, Reha Akpinar, Luca Di Tommaso, Elisa Ficarra, Marta Ranzini
2025	—	`conf`	IM-Fuse: A Mamba-Based Fusion Block for Brain Tumor Segmentation with Incomplete Modalities. MICCAI (8) Vittorio Pipoli, Alessia Saporita, Kevin Marchesini, Costantino Grana, Elisa Ficarra, Federico Bolelli
2025	A*	`conf`	Segmenting Maxillofacial Structures in CBCT Volumes. CVPR Federico Bolelli, Kevin Marchesini, Niels van Nistelrooij, Luca Lumetti, Vittorio Pipoli, Elisa Ficarra, Shankeeth Vinayahalingam, Costantino Grana
2025	A	`conf`	Semantically Conditioned Prompts for Visual Recognition Under Missing Modality Scenarios. WACV Vittorio Pipoli, Federico Bolelli, Sara Sarto, Marcella Cornia, Lorenzo Baraldi, Costantino Grana, Rita Cucchiara, Elisa Ficarra
2025	J	`jnl`	Taming Mambas for 3D Medical Image Segmentation. IEEE Access Luca Lumetti, Vittorio Pipoli, Kevin Marchesini, Elisa Ficarra, Costantino Grana, Federico Bolelli
2025	A	`conf`	Towards Unbiased Continual Learning: Avoiding Forgetting in the Presence of Spurious Correlations. WACV Giacomo Capitani, Lorenzo Bonicelli, Angelo Porrello, Federico Bolelli, Simone Calderara, Elisa Ficarra
2025	—	`conf`	Tracing Information Flow in LLaMA Vision: A Step Toward Multimodal Understanding. CAIP (2) Alessia Saporita, Vittorio Pipoli, Federico Bolelli, Lorenzo Baraldi, Andrea Acquaviva, Elisa Ficarra
2025	—	`conf`	U-Net Transplant: The Role of Pre-training for Model Merging in 3D Medical Segmentation. MICCAI (16) Luca Lumetti, Giacomo Capitani, Elisa Ficarra, Simone Calderara, Costantino Grana, Angelo Porrello, Federico Bolelli
2025	A*	`conf`	Update Your Transformer to the Latest Release: Re-Basin of Task Vectors. ICML Filippo Rinaldi, Giacomo Capitani, Lorenzo Bonicelli, Donato Crisostomi, Federico Bolelli, Elisa Ficarra, Emanuele Rodolà, Simone Calderara, Angelo Porrello
2025	J	`jnl`	Update Your Transformer to the Latest Release: Re-Basin of Task Vectors. CoRR Filippo Rinaldi, Giacomo Capitani, Lorenzo Bonicelli, Donato Crisostomi, Federico Bolelli, Elisa Ficarra, Emanuele Rodolà, Simone Calderara, Angelo Porrello
2024	J	`jnl`	A Graph-Based Multi-Scale Approach With Knowledge Distillation for WSI Classification. IEEE Trans. Medical Imaging Gianpaolo Bontempo, Federico Bolelli, Angelo Porrello, Simone Calderara, Elisa Ficarra
2024	—	`conf`	Beyond the Surface: A Comprehensive Analysis of Implicit Bias in Vision-Language Models. ECCV Workshops (21) Giacomo Capitani, Alice Lucarini, Lorenzo Bonicelli, Federico Bolelli, Simone Calderara, Loris Vezzali, Elisa Ficarra
2024	A	`conf`	ClusterFix: A Cluster-Based Debiasing Approach without Protected-Group Supervision. WACV Giacomo Capitani, Federico Bolelli, Angelo Porrello, Simone Calderara, Elisa Ficarra
2024	—	`conf`	Deep Learning for Classifying Anti-Shigella Opsono- Phagocytosis-Promoting Monoclonal Antibodies. MOVI@MICCAI Elena Pianfetti, Dario Cardamone, Emanuele Roscioli, Giorgio Ciano, Giuseppe Maccari, Claudia Sala, Francesca Micoli, Rino Rappuoli, Duccio Medini, Elisa Ficarra
2024	J	`jnl`	Enhancing Patch-Based Learning for the Segmentation of the Mandibular Canal. IEEE Access Luca Lumetti, Vittorio Pipoli, Federico Bolelli, Elisa Ficarra, Costantino Grana
2024	—	`conf`	Location Matters: Harnessing Spatial Information to Enhance the Segmentation of the Inferior Alveolar Canal in CBCTs. ICPR (28) Luca Lumetti, Vittorio Pipoli, Federico Bolelli, Elisa Ficarra, Costantino Grana
2024	J	`jnl`	Taming Mambas for Voxel Level 3D Medical Image Segmentation. CoRR Luca Lumetti, Vittorio Pipoli, Kevin Marchesini, Elisa Ficarra, Costantino Grana, Federico Bolelli
2023	—	`conf`	A Benchmark Study of Gene Fusion Prioritization Tools. CIBB Francesca Miccolis, Marta Lovino, Elisa Ficarra
2023	—	`conf`	Buffer-MIL: Robust Multi-instance Learning with a Buffer-Based Approach. ICIAP (2) Gianpaolo Bontempo, Luca Lumetti, Angelo Porrello, Federico Bolelli, Simone Calderara, Elisa Ficarra
2023	—	`conf`	DAS-MIL: Distilling Across Scales for MIL Classification of Histological WSIs. MICCAI (1) Gianpaolo Bontempo, Angelo Porrello, Federico Bolelli, Simone Calderara, Elisa Ficarra
2023	—	`conf`	Enhancing PFI Prediction with GDS-MIL: A Graph-Based Dual Stream MIL Approach. ICIAP (1) Gianpaolo Bontempo, Nicola Bartolini, Marta Lovino, Federico Bolelli, Anni Virtanen, Elisa Ficarra
2023	J	`jnl`	MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge. BMC Bioinform. Elena Pianfetti, Marta Lovino, Elisa Ficarra, Loredana Martignetti
2023	J	`jnl`	Neuro Symbolic Continual Learning: Knowledge, Reasoning Shortcuts and Concept Rehearsal. CoRR Emanuele Marconato, Gianpaolo Bontempo, Elisa Ficarra, Simone Calderara, Andrea Passerini, Stefano Teso
2023	A*	`conf`	Neuro-Symbolic Continual Learning: Knowledge, Reasoning Shortcuts and Concept Rehearsal. ICML Emanuele Marconato, Gianpaolo Bontempo, Elisa Ficarra, Simone Calderara, Andrea Passerini, Stefano Teso
2023	J	`jnl`	Predicting gene and protein expression levels from DNA and protein sequences with Perceiver. Comput. Methods Programs Biomed. Matteo Stefanini, Marta Lovino, Rita Cucchiara, Elisa Ficarra
2023	J	`jnl`	W2WNet: A two-module probabilistic Convolutional Neural Network with embedded data cleansing functionality. Expert Syst. Appl. Francesco Ponzio, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2022	J	`jnl`	A survey on data integration for multi-omics sample clustering. Neurocomputing Marta Lovino, Vincenzo Randazzo, Gabriele Ciravegna, Pietro Barbiero, Elisa Ficarra, Giansalvo Cirrincione
2022	—	`conf`	Catastrophic Forgetting in Continual Concept Bottleneck Models. ICIAP Workshops Emanuele Marconato, Gianpaolo Bontempo, Stefano Teso, Elisa Ficarra, Simone Calderara, Andrea Passerini
2022	J	`jnl`	Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations. BMC Bioinform. Alessio Mascolini, Dario Cardamone, Francesco Ponzio, Santa Di Cataldo, Elisa Ficarra
2022	—	`conf`	FusionFlow: An Integrated System Workflow for Gene Fusion Detection in Genomic Samples. ADBIS (Short Papers) Federica Citarrella, Gianpaolo Bontempo, Marta Lovino, Elisa Ficarra
2022	B	`conf`	High Resolution Explanation Maps for CNNs using Segmentation Networks. VL/HCC Alessio Mascolini, Francesco Ponzio, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2022	J	`jnl`	Identifying the oncogenic potential of gene fusions exploiting miRNAs. J. Biomed. Informatics Marta Lovino, Marilisa Montemurro, Venere S. Barrese, Elisa Ficarra
2022	J	`jnl`	LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequences. BMC Bioinform. Jörg Winkler, Gianvito Urgese, Elisa Ficarra, Knut Reinert
2022	J	`jnl`	Predicting gene expression levels from DNA sequences and post-transcriptional information with transformers. Comput. Methods Programs Biomed. Vittorio Pipoli, Mattia Cappelli, Alessandro Palladini, Carlo Peluso, Marta Lovino, Elisa Ficarra
2021	B	`conf`	A Bayesian approach to Expert Gate Incremental Learning. IJCNN Valerio Mieuli, Francesco Ponzio, Alessio Mascolini, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2021	J	`jnl`	Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations: a COVID-19 case-study. CoRR Alessio Mascolini, Dario Cardamone, Francesco Ponzio, Santa Di Cataldo, Elisa Ficarra
2021	J	`jnl`	Exploration of Convolutional Neural Network models for source code classification. Eng. Appl. Artif. Intell. Francesco Barchi, Emanuele Parisi, Gianvito Urgese, Elisa Ficarra, Andrea Acquaviva
2021	J	`jnl`	FUNGI: FUsioN Gene Integration toolset. Bioinform. Alejandra Cervera, Heidi Rausio, Tiia Kähkönen, Noora Andersson, Gabriele Partel, Ville Rantanen, Giulia Paciello, Elisa Ficarra, Johanna Hynninen, Sakari Hietanen, Olli Carpén, Rainer Lehtonen, Sampsa Hautaniemi, Kaisa Huhtinen
2021	J	`jnl`	Optimizing Quality Inspection and Control in Powder Bed Metal Additive Manufacturing: Challenges and Research Directions. Proc. IEEE Santa Di Cataldo, Sara Vinco, Gianvito Urgese, Flaviana Calignano, Elisa Ficarra, Alberto Macii, Enrico Macii
2021	J	`jnl`	PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity. BMC Bioinform. Marilisa Montemurro, Elena Grassi, Carmelo Gabriele Pizzino, Andrea Bertotti, Elisa Ficarra, Gianvito Urgese
2021	J	`jnl`	W2WNet: a two-module probabilistic Convolutional Neural Network with embedded data cleansing functionality. CoRR Francesco Ponzio, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2020	J	`jnl`	BioSeqZip: a collapser of NGS redundant reads for the optimization of sequence analysis. Bioinform. Gianvito Urgese, Emanuele Parisi, Orazio M. Scicolone, Santa Di Cataldo, Elisa Ficarra
2020	J	`jnl`	DEEPrior: a deep learning tool for the prioritization of gene fusions. Bioinform. Marta Lovino, Maria Serena Ciaburri, Gianvito Urgese, Santa Di Cataldo, Elisa Ficarra
2020	—	`conf`	Effective Evaluation of Clustering Algorithms on Single-Cell CNA data. ICBBE Marilisa Montemurro, Gianvito Urgese, Elena Grassi, Carmelo Gabriele Pizzino, Andrea Bertotti, Elisa Ficarra
2020	—	`conf`	Exploiting "Uncertain" Deep Networks for Data Cleaning in Digital Pathology. ISBI Francesco Ponzio, Giacomo Deodato, Enrico Macii, Santa Di Cataldo, Elisa Ficarra
2020	—	`conf`	Multi-omics Classification on Kidney Samples Exploiting Uncertainty-Aware Models. ICIC (2) Marta Lovino, Gianpaolo Bontempo, Giansalvo Cirrincione, Elisa Ficarra
2020	J	`jnl`	Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano
2020	—	`conf`	Unsupervised Multi-omic Data Fusion: The Neural Graph Learning Network. ICIC (1) Pietro Barbiero, Marta Lovino, Mattia Siviero, Gabriele Ciravegna, Vincenzo Randazzo, Elisa Ficarra, Giansalvo Cirrincione
2018	—	`conf`	Colorectal Cancer Classification using Deep Convolutional Networks - An Experimental Study. BIOIMAGING Francesco Ponzio, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2018	—	`conf`	Going Deeper into Colorectal Cancer Histopathology. BIOSTEC (Selected Papers) Francesco Ponzio, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2018	—	`conf`	Predicting the Oncogenic Potential of Gene Fusions Using Convolutional Neural Networks. CIBB Marta Lovino, Gianvito Urgese, Enrico Macii, Santa Di Cataldo, Elisa Ficarra
2018	—	`conf`	geneEx - A Novel Tool to Assess Differential Expression from Gene and Exon Sequencing Data. BIOINFORMATICS Orazio M. Scicolone, Giulia Paciello, Elisa Ficarra
2017	—	`conf`	A Multi-modal Brain Image Registration Framework for US-guided Neuronavigation Systems - Integrating MR and US for Minimally Invasive Neuroimaging. BIOIMAGING Francesco Ponzio, Enrico Macii, Elisa Ficarra, Santa Di Cataldo
2017	—	`conf`	A Novel Proof-of-concept Framework for the Exploitation of ConvNets on Whole Slide Images. IIH-MSP (1) Alessio Mascolini, S. Puzzo, G. Incatasciato, Francesco Ponzio, Elisa Ficarra, Santa Di Cataldo
2017	J	`jnl`	FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. BMC Bioinform. Giulia Paciello, Elisa Ficarra
2016	J	`jnl`	ANAlyte: A modular image analysis tool for ANA testing with indirect immunofluorescence. Comput. Methods Programs Biomed. Santa Di Cataldo, Simone Tonti, Andrea Bottino, Elisa Ficarra
2016	—	`conf`	Automated 3D immunofluorescence analysis of Dorsal Root Ganglia for the investigation of neural circuit alterations: a preliminary study. FedCSIS (Position Papers) Santa Di Cataldo, Simone Tonti, Elisa Ciglieri, Francesco Ferrini, Enrico Macii, Elisa Ficarra, Chiara Salio
2016	J	`jnl`	isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. BMC Bioinform. Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra
2015	J	`jnl`	An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test. Comput. Medical Imaging Graph. Simone Tonti, Santa Di Cataldo, Andrea Bottino, Elisa Ficarra
2015	—	`conf`	Unsupervised HEp-2 mitosis recognition in indirect immunofluorescence imaging. EMBC Simone Tonti, Santa Di Cataldo, Enrico Macii, Elisa Ficarra
2014	—	`conf`	A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer. BIOINFORMATICS Giulia Paciello, Andrea Acquaviva, Consalvo Petti, Claudio Isella, Enzo Medico, Elisa Ficarra
2014	—	`conf`	Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. IWBBIO Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni
2014	J	`jnl`	FunMod: A Cytoscape Plugin for Identifying Functional Modules in Undirected Protein-Protein Networks. Genom. Proteom. Bioinform. Massimo Natale, Alfredo Benso, Stefano Di Carlo, Elisa Ficarra
2014	—	`conf`	Identifying Sub-Network Functional Modules in Protein Undirected Networks. BIOINFORMATICS Massimo Natale, Alfredo Benso, Stefano Di Carlo, Elisa Ficarra
2014	J	`jnl`	Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer. BMC Syst. Biol. Francesco Abate, Sakellarios Zairis, Elisa Ficarra, Andrea Acquaviva, Chris H. Wiggins, Veronique Frattini, Anna Lasorella, Antonio Iavarone, Giorgio Inghirami, Raul Rabadan
2014	J	`jnl`	Subclass Discriminant Analysis of morphological and textural features for HEp-2 staining pattern classification. Pattern Recognit. Santa Di Cataldo, Andrea Bottino, Ihtesham Ul Islam, Tiago Figueiredo Vieira, Elisa Ficarra
2014	—	`conf`	miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. IWBBIO Gianvito Urgese, Giulia Paciello, Claudio Isella, Enzo Medico, Enrico Macii, Elisa Ficarra, Andrea Acquaviva
2013	—	`conf`	A Novel Pipeline for V(D)J Junction Identification using RNA-Seq Paired-end Reads. BIOINFORMATICS Giulia Paciello, Elisa Ficarra, Alberto Zamò, Chiara Pighi, Carmelo Foti, Francesco Abate, Enrico Macii, Andrea Acquaviva
2013	—	`conf`	A Preliminary Analysis on HEp-2 Pattern Classification: Evaluating Strategies Based on Support Vector Machines and Subclass Discriminant Analysis. BIOSTEC (Selected Papers) Ihtesham Ul Islam, Santa Di Cataldo, Andrea Bottino, Enrico Macii, Elisa Ficarra
2013	J	`jnl`	Acceleration of coarse grain molecular dynamics on GPU architectures. J. Comput. Chem. Ardita Shkurti, Mario Orsi, Enrico Macii, Elisa Ficarra, Andrea Acquaviva
2013	—	`conf`	Classification of HEp-2 Staining Patterns in ImmunoFluorescence Images - Comparison of Support Vector Machines and Subclass Discriminant Analysis Strategies. BIOINFORMATICS Ihtesham Ul Islam, Santa Di Cataldo, Andrea Bottino, Elisa Ficarra, Enrico Macii
2013	J	`jnl`	Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes. IEEE ACM Trans. Comput. Biol. Bioinform. Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Roberto Piva, Enrico Macii
2013	J	`jnl`	Integration of Literature with Heterogeneous Information for Genes Correlation Scoring. ACM J. Emerg. Technol. Comput. Syst. Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Enrico Macii
2012	—	`conf`	A Novel Analysis Flow for Fused Transcripts Discovery from Paired-end RNA-Seq Data. BIOINFORMATICS Francesco Abate, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Enrico Macii
2012	J	`jnl`	A Novel Gaussian Extrapolation Approach for 2D Gel Electrophoresis Saturated Protein Spots. Genom. Proteom. Bioinform. Massimo Natale, Alfonso Caiazzo, Enrico M. Bucci, Elisa Ficarra
2012	—	`conf`	A Novel Gaussian Fitting Approach for 2D Gel Electrophoresis Saturated Protein Spots. BIOINFORMATICS Massimo Natale, Alfonso Caiazzo, Enrico M. Bucci, Elisa Ficarra
2012	B	`conf`	Applying textural features to the classification of HEp-2 cell patterns in IIF images. ICPR Santa Di Cataldo, Andrea Bottino, Elisa Ficarra, Enrico Macii
2012	J	`jnl`	Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model. Bioinform. Francesco Abate, Andrea Acquaviva, Giulia Paciello, Carmelo Foti, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Ilaria Iacobucci, Simona Soverini, Giovanni Martinelli, Enrico Macii
2012	—	`conf`	Characterization of Coarse Grain Molecular Dynamic Simulation Performance on Graphic Processing Unit Architectures. BIOINFORMATICS Ardita Shkurti, Andrea Acquaviva, Elisa Ficarra, Mario Orsi, Enrico Macii
2012	J	`jnl`	Computer-aided techniques for chromogenic immunohistochemistry: Status and directions. Comput. Biol. Medicine Santa Di Cataldo, Elisa Ficarra, Enrico Macii
2012	J	`jnl`	One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms. Genom. Proteom. Bioinform. Paula Helena Reyes-Herrera, Elisa Ficarra
2011	—	`conf`	A New Latent Semantic Analysis based Methodology for Knowledge Extraction from Biomedical Literature and Biological Pathways Databases. BIOINFORMATICS Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Enrico Macii
2011	—	`conf`	A novel framework for chimeric transcript detection based on accurate gene fusion model. BIBM Workshops Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Giulia Paciello, Enrico Macii, Alberto Ferrarini, Massimo Delledonne, Simona Soverini, Giovanni Martinelli
2011	J	`jnl`	Automated Segmentation of Cells With IHC Membrane Staining. IEEE Trans. Biomed. Eng. Elisa Ficarra, Santa Di Cataldo, Andrea Acquaviva, Enrico Macii
2011	—	`conf`	Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction. BIOINFORMATICS Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, M. A. Deriu, A. Grosso, Enrico Macii
2011	—	`conf`	Improving Latent Semantic Analysis of Biomedical Literature Integrating UMLS Metathesaurus and Biomedical Pathways Databases. BIOSTEC (Selected Papers) Francesco Abate, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2011	—	`conf`	Motion Artifact Correction in ASL images: An Improved Automated Procedure. BIBM Santa Di Cataldo, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2011	A	`conf`	Solid state photodetectors for nuclear medical imaging applications. DATE Massimo Mazzillo, Pier Giorgio Fallica, Elisa Ficarra, A. Messina, Mario Francesco Romeo, Roberto Zafalon
2011	J	`jnl`	miREE: miRNA Recognition Elements Ensemble. BMC Bioinform. Paula Helena Reyes-Herrera, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2010	J	`jnl`	Achieving the way for automated segmentation of nuclei in cancer tissue images through morphology-based approach: A quantitative evaluation. Comput. Medical Imaging Graph. Santa Di Cataldo, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2010	Misc	`conf`	An Automated Tool for Scoring Biomedical Terms Correlation Based on Semantic Analysis. CISIS Francesco Abate, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2010	J	`jnl`	Automated segmentation of tissue images for computerized IHC analysis. Comput. Methods Programs Biomed. Santa Di Cataldo, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2010	—	`conf`	GPU acceleration of simulation tool for lipid-bilayers. BIBM Workshops Ardita Shkurti, Andrea Acquaviva, Elisa Ficarra, Enrico Macii, Mario Orsi, Martino Ruggiero
2010	Misc	`conf`	MicroRNA Target Prediction and Exploration through Candidate Binding Sites Generation. CISIS Paula Helena Reyes-Herrera, Andrea Acquaviva, Elisa Ficarra, Enrico Macii
2009	—	`ch.`	Extraction of Constraints from Biological Data. Biomedical Data and Applications Daniele Apiletti, Giulia Bruno, Elisa Ficarra, Elena Baralis
2008	—	`conf`	Automated Discrimination of Pathological Regions in Tissue Images: Unsupervised Clustering vs. Supervised SVM Classification. BIOSTEC (Selected Papers) Santa Di Cataldo, Elisa Ficarra, Enrico Macii
2008	—	`conf`	Fully-Automated Segmentation of Tumor Areas in Tissue Confocal Images - Comparison between a Custom Unsupervised and a Supervised SVM Approach. BIOSIGNALS (1) Santa Di Cataldo, Elisa Ficarra, Enrico Macii
2008	J	`jnl`	Joint co-clustering: Co-clustering of genomic and clinical bioimaging data. Comput. Math. Appl. Elisa Ficarra, Giovanni De Micheli, Sungroh Yoon, Luca Benini, Enrico Macii
2008	C	`conf`	Segmentation of nuclei in cancer tissue images: Contrasting active contours with morphology-based approach. BIBE Santa Di Cataldo, Elisa Ficarra, Andrea Acquaviva, Enrico Macii
2007	C	`conf`	Gene-Markers Representation for Microarray Data Integration. BIBE Elena Baralis, Elisa Ficarra, Alessandro Fiori, Enrico Macii
2007	—	`conf`	Selection of Tumor Areas and Segmentation of Nuclear Membranes in Tissue Confocal Images: A Fully Automated Approach. BIBM Santa Di Cataldo, Elisa Ficarra, Enrico Macii
2006	B	`conf`	Computer-Aided Evaluation of Protein Expression in Pathological Tissue Images. CBMS Elisa Ficarra, Enrico Macii, Giovanni De Micheli, Luca Benini
2006	J	`jnl`	Data Cleaning and Semantic Improvement in Biological Databases. J. Integr. Bioinform. Daniele Apiletti, Giulia Bruno, Elisa Ficarra, Elena Baralis
2006	—	`—`	Data mining techniques for genetic information discovery. Elisa Ficarra
2006	J	`jnl`	Optimized Technique for Dna Structural Properties Discovering. Int. J. Artif. Intell. Tools Daniele Masotti, Elisa Ficarra, Enrico Macii, Luca Benini
2005	J	`jnl`	Automated DNA fragments recognition and sizing through AFM image processing. IEEE Trans. Inf. Technol. Biomed. Elisa Ficarra, Luca Benini, Enrico Macii, Giampaolo Zuccheri
2005	J	`jnl`	Automatic intrinsic DNA curvature computation from AFM images. IEEE Trans. Biomed. Eng. Elisa Ficarra, Daniele Masotti, Enrico Macii, Luca Benini, Giampaolo Zuccheri, Bruno Samorì
2004	C	`conf`	Techniques for Enhancing Computation of DNA Curvature Molecules. BIBE Daniele Masotti, Elisa Ficarra, Enrico Macii, Luca Benini
2002	—	`conf`	Automated DNA sizing in atomic force microscope images. ISBI Elisa Ficarra, Luca Benini, Bruno Riccò, Giampaolo Zuccheri