Elif Keles

39 papers A 1Journal 30Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
AdverIN: Monotonic adversarial intensity attack for domain generalization in medical image segmentation.
Medical Image Anal.
Zheyuan Zhang, Bin Wang, Lanhong Yao, Elif Keles, Debesh Jha, Matthew Antalek, Gorkem Durak, Alpay Medetalibeyoglu, Concetto Spampinato, Baris Turkbey, Boqing Gong, Ulas Bagci
2026 J jnl
Beyond Medical Diagnostics: How Medical Multimodal Large Language Models Think in Space.
CoRR
Quoc-Huy Trinh, Xi Ding, Yang Liu, Zhenyue Qin, Xingjian Li, Gorkem Durak, Halil Ertugrul Aktas, Elif Keles, Ulas Bagci, Min Xu
2026 J jnl
VHU-Net: Variational hadamard U-Net for body MRI bias field correction.
Medical Image Anal.
Xin Zhu, Ahmet Enis Çetin, Gorkem Durak, Batuhan Gündogdu, Ziliang Hong, Hongyi Pan, Ertugrul Aktas, Elif Keles, Hatice Savas, Aytekin Oto, Hiten D. Patel, Adam B. Murphy, Ashley Ross, Frank H. Miller, Baris Turkbey, Ulas Bagci
2025 — conf
A New Logic for Pediatric Brain Tumor Segmentation.
ISBI
Max Bengtsson, Elif Keles, Gorkem Durak, Syed Anwar, Yuri S. Velichko, Marius George Linguraru, Angela J. Waanders, Ulas Bagci
2025 — conf
Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI.
ISBI
Hongyi Pan, Gorkem Durak, Zheyuan Zhang, Yavuz Taktak, Elif Keles, Halil Ertugrul Aktas, Alpay Medetalibeyoglu, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J. Bruno, Rajesh N. Keswani, Pallavi Tiwari, Candice W. Bolan, Tamas Gonda, Michael G. Gorrins, Michael B. Wallace, Ziyue Xu, Ulas Bagci
2025 J jnl
Cyst-X: AI-Powered Pancreatic Cancer Risk Prediction from Multicenter MRI in Centralized and Federated Learning.
CoRR
Hongyi Pan, Gorkem Durak, Elif Keles, Deniz Seyithanoglu, Zheyuan Zhang, Alpay Medetalibeyoglu, Halil Ertugrul Aktas, Andrea Mia Bejar, Ziliang Hong, Yavuz Taktak, Gulbiz Dagoglu Kartal, Sukru Mehmet Erturk, Timurhan Cebeci, Maria Jaramillo Gonzalez, Yury Velichko, Lili Zhao, Emil Agarunov, Federica Proietto Salanitri, Concetto Spampinato, Pallavi Tiwari, Ziyue Xu, Sachin Jambawalikar, Ivo G. Schoots, Marco J. Bruno, Chenchan Huang, Candice W. Bolan, Tamas Gonda, Frank H. Miller, Rajesh N. Keswani, Michael B. Wallace, Ulas Bagci
2025 J jnl
DiffBoost: Enhancing Medical Image Segmentation via Text-Guided Diffusion Model.
IEEE Trans. Medical Imaging
Zheyuan Zhang, Lanhong Yao, Bin Wang, Debesh Jha, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Ulas Bagci
2025 — conf
IPMN Risk Assessment Under Federated Learning Paradigm.
ISBI
Hongyi Pan, Ziliang Hong, Gorkem Durak, Elif Keles, Halil Ertugrul Aktas, Yavuz Taktak, Alpay Medetalibeyoglu, Zheyuan Zhang, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J. Bruno, Pallavi Tiwari, Candice W. Bolan, Tamas Gonda, Frank H. Miller, Rajesh N. Keswani, Michael B. Wallace, Ziyue Xu, Ulas Bagci
2025 J jnl
Large-scale multi-center CT and MRI segmentation of pancreas with deep learning.
Medical Image Anal.
Zheyuan Zhang, Elif Keles, Gorkem Durak, Yavuz Taktak, Onkar Susladkar, Vandan Gorade, Debesh Jha, Asli C. Ormeci, Alpay Medetalibeyoglu, Lanhong Yao, Bin Wang, Ilkin Sevgi Isler, Linkai Peng, Hongyi Pan, Camila Lopes Vendrami, Amir Bourhani, Yury Velichko, Boqing Gong, Concetto Spampinato, Ayis Pyrros, Pallavi Tiwari, Derk C. F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan, Emil Agarunov, Nassier Harfouch, Chenchan Huang, Marco J. Bruno, Ivo Schoots, Rajesh N. Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Baris Turkbey, Michael B. Wallace, Ulas Bagci
2025 J jnl
Liver Cirrhosis Stage Estimation from MRI with Deep Learning.
CoRR
Jun Zeng, Debesh Jha, Ertugrul Aktas, Elif Keles, Alpay Medetalibeyoglu, Matthew Antalek, Amir Borhani, Daniela P. Ladner, Gorkem Durak, Ulas Bagci
2025 J jnl
Pediatric Pancreas Segmentation from MRI Scans with Deep Learning.
CoRR
Elif Keles, Merve Yazol, Gorkem Durak, Ziliang Hong, Halil Ertugrul Aktas, Zheyuan Zhang, Linkai Peng, Onkar Susladkar, Necati Guzelyel, Oznur Leman Boyunaga, Cemal Yazici, Mark Lowe, Aliye Uc, Ulas Bagci
2025 J jnl
Predicting Risk of Pulmonary Fibrosis Formation in PASC Patients.
CoRR
Wanying Dou, Gorkem Durak, Koushik Biswas, Ziliang Hong, Andrea Mia Bejar, Elif Keles, Kaan Akin, Sukru Mehmet Erturk, Alpay Medetalibeyoglu, Marc Sala, Alexander Misharin, Hatice Savas, Mary Salvatore, Sachin Jambawalikar, Drew A. Torigian, Jayaram K. Udupa, Ulas Bagci
2025 J jnl
Rethink Domain Generalization in Heterogeneous Sequence MRI Segmentation.
CoRR
Zheyuan Zhang, Linkai Peng, Wanying Dou, Cuiling Sun, Halil Ertugrul Aktas, Andrea Mia Bejar, Elif Keles, Gorkem Durak, Ulas Bagci
2025 J jnl
SRMA-Mamba: Spatial Reverse Mamba Attention Network for Pathological Liver Segmentation in MRI Volumes.
CoRR
Jun Zeng, Yannan Huang, Elif Keles, Halil Ertugrul Aktas, Gorkem Durak, Nikhil Kumar Tomar, Quoc-Huy Trinh, Deepak Ranjan Nayak, Ulas Bagci, Debesh Jha
2025 J jnl
Upstream Probabilistic Meta-Imputation for Multimodal Pediatric Pancreatitis Classification.
CoRR
Max A. Nelson, Elif Keles, Eminenur Sen Tasci, Merve Yazol, Halil Ertugrul Aktas, Ziliang Hong, Andrea Mia Bejar, Gorkem Durak, Oznur Leman Boyunaga, Ulas Bagci
2024 J jnl
A New Logic For Pediatric Brain Tumor Segmentation.
CoRR
Max Bengtsson, Elif Keles, Gorkem Durak, Syed Anwar, Yuri S. Velichko, Marius George Linguraru, Angela J. Waanders, Ulas Bagci
2024 J jnl
Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI.
CoRR
Hongyi Pan, Gorkem Durak, Zheyuan Zhang, Yavuz Taktak, Elif Keles, Ertugrul Aktas, Alpay Medetalibeyoglu, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J. Bruno, Rajesh N. Keswani, Pallavi Tiwari, Candice W. Bolan, Tamas Gonda, Michael G. Goggins, Michael B. Wallace, Ziyue Xu, Ulas Bagci
2024 J jnl
CirrMRI600+: Large Scale MRI Collection and Segmentation of Cirrhotic Liver.
CoRR
Debesh Jha, Onkar Susladkar, Vandan Gorade, Elif Keles, Matthew Antalek, Deniz Seyithanoglu, Timurhan Cebeci, Ertugrul Aktas, Gulbiz Dagoglu Kartal, Sabahattin Kaymakoglu, Sukru Mehmet Erturk, Yuri S. Velichko, Daniela P. Ladner, Amir Borhani, Alpay Medetalibeyoglu, Gorkem Durak, Ulas Bagci
2024 — conf
Explainable Transformer Prototypes for Medical Diagnoses.
ISBI
Ugur Demir, Debesh Jha, Zheyuan Zhang, Elif Keles, Bradley D. Allen, Aggelos K. Katsaggelos, Ulas Bagci
2024 J jnl
Explainable Transformer Prototypes for Medical Diagnoses.
CoRR
Ugur Demir, Debesh Jha, Zheyuan Zhang, Elif Keles, Bradley D. Allen, Aggelos K. Katsaggelos, Ulas Bagci
2024 A conf
GazeGNN: A Gaze-Guided Graph Neural Network for Chest X-ray Classification.
WACV
Bin Wang, Hongyi Pan, Armstrong Aboah, Zheyuan Zhang, Elif Keles, Drew A. Torigian, Baris Turkbey, Elizabeth A. Krupinski, Jayaram K. Udupa, Ulas Bagci
2024 J jnl
IPMN Risk Assessment under Federated Learning Paradigm.
CoRR
Hongyi Pan, Ziliang Hong, Gorkem Durak, Elif Keles, Halil Ertugrul Aktas, Yavuz Taktak, Alpay Medetalibeyoglu, Zheyuan Zhang, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J. Bruno, Pallavi Tiwari, Candice W. Bolan, Tamas Gonda, Frank H. Miller, Rajesh N. Keswani, Michael B. Wallace, Ziyue Xu, Ulas Bagci
2024 J jnl
Large-Scale Multi-Center CT and MRI Segmentation of Pancreas with Deep Learning.
CoRR
Zheyuan Zhang, Elif Keles, Gorkem Durak, Yavuz Taktak, Onkar Susladkar, Vandan Gorade, Debesh Jha, Asli C. Ormeci, Alpay Medetalibeyoglu, Lanhong Yao, Bin Wang, Ilkin Sevgi Isler, Linkai Peng, Hongyi Pan, Camila Lopes Vendrami, Amir Bourhani, Yury Velichko, Boqing Gong, Concetto Spampinato, Ayis Pyrros, Pallavi Tiwari, Derk C. F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan, Emil Agarunov, Nassier Harfouch, Chenchan Huang, Marco J. Bruno, Ivo Schoots, Rajesh N. Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Baris Turkbey, Michael B. Wallace, Ulas Bagci
2024 J jnl
Mortality Prediction of Pulmonary Embolism Patients with Deep Learning and XGBoost.
CoRR
Yalcin Tur, Vedat Cicek, Tufan Cinar, Elif Keles, Bradlay D. Allen, Hatice Savas, Gorkem Durak, Alpay Medetalibeyoglu, Ulas Bagci
2024 J jnl
Towards Synergistic Deep Learning Models for Volumetric Cirrhotic Liver Segmentation in MRIs.
CoRR
Vandan Gorade, Onkar Susladkar, Gorkem Durak, Elif Keles, Ertugrul Aktas, Timurhan Cebeci, Alpay Medetalibeyoglu, Daniela P. Ladner, Debesh Jha, Ulas Bagci
2023 J jnl
A Critical Appraisal of Data Augmentation Methods for Imaging-Based Medical Diagnosis Applications.
CoRR
Tara M. Pattilachan, Ugur Demir, Elif Keles, Debesh Jha, Derk C. F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan, Michael B. Wallace, Ulas Bagci
2023 — conf
An Efficient Multi-Scale Fusion Network for 3D Organs at Risk (OARs) Segmentation.
EMBC
Abhishek Srivastava, Debesh Jha, Elif Keles, Bulent Aydogan, Mohamed Abazeed, Ulas Bagci
2023 J jnl
EMIT-Diff: Enhancing Medical Image Segmentation via Text-Guided Diffusion Model.
CoRR
Zheyuan Zhang, Lanhong Yao, Bin Wang, Debesh Jha, Elif Keles, Alpay Medetalibeyoglu, Ulas Bagci
2023 J jnl
Ensuring Trustworthy Medical Artificial Intelligence through Ethical and Philosophical Principles.
CoRR
Debesh Jha, Ashish Rauniyar, Abhishek Srivastava, Desta Haileselassie Hagos, Nikhil Kumar Tomar, Vanshali Sharma, Elif Keles, Zheyuan Zhang, Ugur Demir, Ahmet Topcu, Anis Yazidi, Jan Erik Håkegård, Ulas Bagci
2023 — conf
Radiomics Boosts Deep Learning Model for IPMN Classification.
MLMI@MICCAI (2)
Lanhong Yao, Zheyuan Zhang, Ugur Demir, Elif Keles, Camila Vendrami, Emil Agarunov, Candice W. Bolan, Ivo Schoots, Marc J. Bruno, Rajesh Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Michael B. Wallace, Concetto Spampinato, Ulas Bagci
2023 J jnl
Radiomics Boosts Deep Learning Model for IPMN Classification.
CoRR
Lanhong Yao, Zheyuan Zhang, Ugur Demir, Elif Keles, Camila Vendrami, Emil Agarunov, Candice W. Bolan, Ivo Schoots, Marc J. Bruno, Rajesh Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Michael B. Wallace, Concetto Spampinato, Ulas Bagci
2023 J jnl
Selecting the Best Optimizers for Deep Learning based Medical Image Segmentation.
CoRR
Aliasghar Mortazi, Vedat Cicek, Elif Keles, Ulas Bagci
2023 J jnl
The Past, Current, and Future of Neonatal Intensive Care Units with Artificial Intelligence.
CoRR
Elif Keles, Ulas Bagci
2023 J jnl
The past, current, and future of neonatal intensive care units with artificial intelligence: a systematic review.
npj Digit. Medicine
Elif Keles, Ulas Bagci
2022 J jnl
An Efficient Multi-Scale Fusion Network for 3D Organ at Risk (OAR) Segmentation.
CoRR
Abhishek Srivastava, Debesh Jha, Elif Keles, Bulent Aydogan, Mohamed Abazeed, Ulas Bagci
2022 — conf
Transformer Based Generative Adversarial Network for Liver Segmentation.
ICIAP Workshops
Ugur Demir, Zheyuan Zhang, Bin Wang, Matthew Antalek, Elif Keles, Debesh Jha, Amir Borhani, Daniela P. Ladner, Ulas Bagci
2022 J jnl
Transformer based Generative Adversarial Network for Liver Segmentation.
CoRR
Ugur Demir, Zheyuan Zhang, Bin Wang, Matthew Antalek, Elif Keles, Debesh Jha, Amir Borhani, Daniela P. Ladner, Ulas Bagci
2021 — conf
Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis.
MLMI@MICCAI
Ugur Demir, Ismail Irmakci, Elif Keles, Ahmet Topcu, Ziyue Xu, Concetto Spampinato, Sachin Jambawalikar, Evrim Turkbey, Baris Turkbey, Ulas Bagci
2021 J jnl
Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis.
CoRR
Ugur Demir, Ismail Irmakci, Elif Keles, Ahmet Topcu, Ziyue Xu, Concetto Spampinato, Sachin Jambawalikar, Evrim Turkbey, Baris Turkbey, Ulas Bagci