Elena V. Ignatieva

18 papers A 1Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2016 J jnl
Hidden heterogeneity of transcription factor binding sites: A case study of SF-1.
Comput. Biol. Chem.
Victor G. Levitsky, Dmitry Yu. Oshchepkov, Nataly V. Klimova, Elena V. Ignatieva, Gennady V. Vasiliev, Vasily M. Merkulov, Tatyana I. Merkulova
2012 J jnl
ExpertDiscovery and UGENE integrated system for intelligent analysis of regulatory regions of genes.
Silico Biol.
Y. Y. Vaskin, I. V. Khomicheva, Elena V. Ignatieva, Evgenii E. Vityaev
2008 J jnl
Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research.
Intell. Data Anal.
Victor G. Levitsky, Elena V. Ignatieva, Eugenia Aman, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman
2008 J jnl
TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes.
Intell. Data Anal.
Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko
2007 J jnl
Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.
Briefings Bioinform.
Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, Elena A. Ananko, Dmitry Yu. Oshchepkov, Victor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman
2007 J jnl
Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.
BMC Bioinform.
Victor G. Levitsky, Elena V. Ignatieva, Elena A. Ananko, Igor I. Turnaev, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman
2004 J jnl
SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.
Nucleic Acids Res.
Dmitry Yu. Oshchepkov, Evgenii E. Vityaev, Dmitry A. Grigorovich, Elena V. Ignatieva, Tamara M. Khlebodarova
2002 — conf
Gene Networks Description and Modeling in the GeneNet System.
Gene Regulations and Metabolism
Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvai, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, Yuri G. Matushkin
2002 J jnl
GeneNet database: description and modeling of gene networks.
Silico Biol.
Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin
2002 J jnl
GeneNet: a database on structure and functional organisation of gene networks.
Nucleic Acids Res.
Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov
2002 J jnl
Transcription Regulatory Regions Database (TRRD): its status in 2002.
Nucleic Acids Res.
Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
2000 J jnl
Transcription Regulatory Regions Database (TRRD): its status in 2000.
Nucleic Acids Res.
Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton
1999 J jnl
Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinform.
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
1999 J jnl
Transcription Regulatory Regions Database (TRRD): its status in 1999.
Nucleic Acids Res.
Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
1998 J jnl
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Nucleic Acids Res.
T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Fedor A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov
1998 A conf
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
ISMB
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
1997 — conf
Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD).
German Conference on Bioinformatics
Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
1996 — conf
WWWTRRD: Hypertext Information System an Transcription Regulation.
German Conference on Bioinformatics
Elena A. Ananko, Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov