Elena S. Dimitrova

20 papers B 1Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
Neural network approaches, including use of topological data analysis, enhance classification of human induced pluripotent stem cell colonies by treatment condition.
PLoS Comput. Biol.
Alexander Ruys de Perez, Paul E. Anderson, Elena S. Dimitrova, Melissa L. Kemp
2024 J jnl
A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification.
SIAM J. Appl. Dyn. Syst.
Alan Veliz-Cuba, Vanessa Newsome-Slade, Elena S. Dimitrova
2024 J jnl
Algebraic Experimental Design: Theory and Computation.
SIAM J. Appl. Algebra Geom.
Elena S. Dimitrova, Cameron H. Fredrickson, Nicholas A. Rondoni, Brandilyn Stigler, Alan Veliz-Cuba
2023 J jnl
Cyclone: open-source package for simulation and analysis of finite dynamical systems.
Bioinform.
Elena S. Dimitrova, Adam C. Knapp, Brandilyn Stigler, Michael Eugene Stillman
2022 J jnl
Algebraic model selection and experimental design in biological data science.
Adv. Appl. Math.
Elena S. Dimitrova, Jingzhen Hu, Qingzhong Liang, Brandilyn Stigler, Anyu Zhang
2022 J jnl
Revealing the canalizing structure of Boolean functions: Algorithms and applications.
Autom.
Elena S. Dimitrova, Brandilyn Stigler, Claus Kadelka, David Murrugarra
2021 J jnl
Quantifying the total effect of edge interventions in discrete multistate networks.
Autom.
David Murrugarra, Elena S. Dimitrova
2021 J jnl
Revealing the canalizing structure of Boolean functions: Algorithms and applications.
CoRR
Elena S. Dimitrova, Brandilyn Stigler, Claus Kadelka, David Murrugarra
2019 J jnl
PlantSimLab - a modeling and simulation web tool for plant biologists.
BMC Bioinform.
S. Ha, Elena S. Dimitrova, Stefan Hoops, Doaa Altarawy, Mitra Ansariola, D. Deb, Jane Glazebrook, R. Hillmer, Hossameldin Shahin, Fumiaki Katagiri, John McDowell, Molly Megraw, João C. Setubal, B. M. Tyler, Reinhard C. Laubenbacher
2018 J jnl
The innate immune response to ischemic injury: a multiscale modeling perspective.
BMC Syst. Biol.
Elena S. Dimitrova, Leslie A. Caromile, Reinhard C. Laubenbacher, Linda H. Shapiro
2015 J jnl
Molecular network control through boolean canalization.
EURASIP J. Bioinform. Syst. Biol.
David Murrugarra, Elena S. Dimitrova
2011 J jnl
Parameter estimation for Boolean models of biological networks.
Theor. Comput. Sci.
Elena S. Dimitrova, Luis David García-Puente, Franziska Hinkelmann, Abdul Salam Jarrah, Reinhard C. Laubenbacher, Brandilyn Stigler, Michael Eugene Stillman, Paola Vera-Licona
2011 J jnl
Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks.
EURASIP J. Bioinform. Syst. Biol.
Elena S. Dimitrova, Indranil Mitra, Abdul Salam Jarrah
2010 J jnl
Discretization of Time Series Data.
J. Comput. Biol.
Elena S. Dimitrova, Paola Vera-Licona, John McGee, Reinhard C. Laubenbacher
2010 J jnl
Estimating the Volumes of the Cones in a Gröbner Fan.
Math. Comput. Sci.
Elena S. Dimitrova
2008 J jnl
Applications of the gröbner fan to gene network reconstruction (abstract only).
ACM Commun. Comput. Algebra
Elena S. Dimitrova, Brandilyn Stigler, Abdul Salam Jarrah, Reinhard C. Laubenbacher
2008 J jnl
Forecasting polynomial dynamics.
Appl. Math. Comput.
Elena S. Dimitrova, Andrew Zardecki
2007 B conf
A Gröbner fan method for biochemical network modeling.
ISSAC
Elena S. Dimitrova, Abdul Salam Jarrah, Reinhard C. Laubenbacher, Brandilyn Stigler
2006 — —
Polynomial Models for Systems Biology: Data Discretization and Term Order Effect on Dynamics.
Elena S. Dimitrova
2001 J jnl
Statistics of some Low-Dimensional Chaotic Flows.
Int. J. Bifurc. Chaos
Elena S. Dimitrova, Oleg I. Yordanov