Elena Rivas

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
RNA covariation at helix-level resolution for the identification of evolutionarily conserved RNA structure.
PLoS Comput. Biol.
Elena Rivas
2021 J jnl
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Nucleic Acids Res.
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
2020 J jnl
Estimating the power of sequence covariation for detecting conserved RNA structure.
Bioinform.
Elena Rivas, Jody Clements, Sean R. Eddy
2020 J jnl
RNA structure prediction using positive and negative evolutionary information.
PLoS Comput. Biol.
Elena Rivas
2018 J jnl
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
Nucleic Acids Res.
Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P. Nawrocki, Elena Rivas, Sean R. Eddy, Alex Bateman, Robert D. Finn, Anton I. Petrov
2015 J jnl
Parameterizing sequence alignment with an explicit evolutionary model.
BMC Bioinform.
Elena Rivas, Sean R. Eddy
2008 J jnl
Probabilistic Phylogenetic Inference with Insertions and Deletions.
PLoS Comput. Biol.
Elena Rivas, Sean R. Eddy
2005 J jnl
Evolutionary models for insertions and deletions in a probabilistic modeling framework.
BMC Bioinform.
Elena Rivas
2001 J jnl
Noncoding RNA gene detection using comparative sequence analysis.
BMC Bioinform.
Elena Rivas, Sean R. Eddy
2000 J jnl
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.
Bioinform.
Elena Rivas, Sean R. Eddy
2000 J jnl
The language of RNA: a formal grammar that includes pseudoknots.
Bioinform.
Elena Rivas, Sean R. Eddy