Elena Beisswanger

24 papers B 4C 1Misc 4Journal 6Unranked 9
YearRankTypeTitle / Venue / Authors
2012 Misc conf
Active Learning-Based Corpus Annotation - The PathoJen Experience.
AMIA
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler
2012 B conf
Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena.
LREC
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler, Jenny Traumüller, Susann Schröder, Kerstin Hornbostel
2012 Misc conf
The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKB.
Pacific Symposium on Biocomputing
Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2012 J jnl
Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets.
J. Biomed. Semant.
Elena Beisswanger, Udo Hahn
2011 J jnl
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomed. Semant.
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2010 — conf
A Proposal for a Configurable Silver Standard.
Linguistic Annotation Workshop
Udo Hahn, Katrin Tomanek, Elena Beisswanger, Erik Faessler
2010 — conf
Aligning UniProt and MeSH - A Case Study on Human Protein Terms.
MedInfo
Elena Beisswanger, Joachim Wermter, Udo Hahn
2010 — conf
Assessment of NER solutions against the first and second CALBC silver standard corpus.
Semantic Mining in Biomedicine
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2010 J jnl
Calbc Silver Standard Corpus.
J. Bioinform. Comput. Biol.
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2010 — conf
Exploiting Relation Extraction for Ontology Alignment.
ISWC (2)
Elena Beisswanger
2010 B conf
The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers.
LREC
Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn
2010 B conf
The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability.
LREC
Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2009 J jnl
Alignment of the UMLS semantic network with BioTop: methodology and assessment.
Bioinform.
Stefan Schulz, Elena Beisswanger, László van den Hoek, Olivier Bodenreider, Erik M. van Mulligen
2009 J jnl
MaHCO: an ontology of the major histocompatibility complex for immunoinformatic applications and text mining.
Bioinform.
David S. DeLuca, Elena Beisswanger, Joachim Wermter, Peter A. Horn, Udo Hahn, Rainer Blasczyk
2008 — conf
BioTop and ChemTop - Top-Domain Ontologies for Biology and Chemistry.
ISWC (Posters & Demos)
Holger Stenzhorn, Stefan Schulz, Elena Beisswanger, Udo Hahn, László van den Hoek, Erik M. van Mulligen
2008 J jnl
BioTop: An upper domain ontology for the life sciencesA description of its current structure, contents and interfaces to OBO ontologies.
Appl. Ontology
Elena Beisswanger, Stefan Schulz, Holger Stenzhorn, Udo Hahn
2008 — conf
Building a BioWordNet Using WordNet Data Structures and WordNet's Software Infrastructure-A Failure Story.
SETQALNLP
Michael Poprat, Elena Beisswanger, Udo Hahn
2008 — conf
Gene Regulation Ontology (GRO): Design Principles and Use Cases.
MIE
Elena Beisswanger, Vivian Lee, Jung-Jae Kim, Dietrich Rebholz-Schuhmann, Andrea Splendiani, Olivier Dameron, Stefan Schulz, Udo Hahn
2008 B conf
Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab.
LREC
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Michael Poprat, Katrin Tomanek, Joachim Wermter
2008 — conf
WordNet-Inspired Terminological Resources for Bio-NLP.
Ontologies and Text Mining for Life Sciences
Elena Beisswanger, Michael Poprat, Udo Hahn
2007 Misc conf
An Ontology for Major Histocompatibility Complex (MHC) Alleles and Molecules.
AMIA
Elena Beisswanger, David S. DeLuca, Rainer Blasczyk, Udo Hahn
2007 — conf
Towards a Top-Domain Ontology for Linking Biomedical Ontologies.
MedInfo
Holger Stenzhorn, Elena Beisswanger, Stefan Schulz
2006 C conf
From GENIA to BIOTOP - Towards a Top-Level Ontology for Biology.
FOIS
Stefan Schulz, Elena Beisswanger, Udo Hahn, Joachim Wermter, Anand Kumar, Holger Stenzhorn
2006 Misc conf
Towards an Upper-Level Ontology for Molecular Biology.
AMIA
Stefan Schulz, Elena Beisswanger, Joachim Wermter, Udo Hahn